AT4G38213

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013304
Physical Location & Seq
Reverse (-)
17924384 .. 17925172
789 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38213.1

Sequence Viewer

Length: 513 bp
ATGATGGAGGAGTGCAGTATGAGGAAACTGGCCTTGTGGCACACGAGAACCTTCAAGCCTGTTATGACGCACGAGGAGCTTGAACCAATCATGTCCACCATGGGCTTCGTCGCTCAGGCCACCGGAGCAGGAGGAGGATTCAAAGAGTACGTTTTCCTCTCTTCTCCCACCACCACCACCACCAGGCCCAGGCTGCCCTATCCCCACATCGACGGCCTCCATATCACCACCTACCAGGCTTTTATTGACGCACTGACCTTCTTTCTTGATGTCTCTGATCTCTTCCATGTCAGGGGAATGCCGCTGCAACGTGCCAAAGATAACAACAGAAAGTGGCGTCGCATGGAAGAGGACGAAAATGTGTTTGTCTATAGAGATGGGACGCTGGATAAGTCGACTCACGGTTGTCCCATCAAACAAGAGTCATCATCGTATACACATGTTCTCATCCACCTCAAACCGCTACCTCATTTCACTCTTCTTCCCCTTAAGGACATCATTGTCTCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.55

Weight (kDa)

7.13

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38213
fragaria_vesca FvH4_2g17020
malus_domestica MD05G1143100.v1.1 MD10G1142900.v1.1
prunus_persica Prupe.8G181900_v2.0.a1
pyrus_communis pycom05g13760 pycom10g12280
rosa_chinensis RchiOBHm_Chr6g0281201
rosa_laevigata RLG00000012986
rosa_multiflora Rmu_co8459503.1_g000001 Rmu_sc0001705.1_g000026
rosa_roxburghii Rroxscaffold_7G00187230
rosa_rugosa Rorug06G0139600
rosa_samantha Rh6AG251500 Rh6BG254700 Rh6CG254300 Rh6DG246100
rosa_wichuraiana Rw6G021840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 500
AccI GTMKAC 2 cut(s) 395, 434
AciI CCGC 2 cut(s) 302, 461
AcyI GRCGYC 1 cut(s) 337
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 3 cut(s) 183, 189, 292
AflII CTTAAG 1 cut(s) 488
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 3 cut(s) 55, 83, 142
AjnI CCWGG 3 cut(s) 182, 188, 234
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 277, 508
AoxI GGCC 4 cut(s) 30, 117, 185, 214
ApeKI GCWGC 2 cut(s) 193, 304
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 217
BauI CACGAG 2 cut(s) 43, 71
BbvI GCAGC 2 cut(s) 180, 291
BccI CCATC 2 cut(s) 371, 419
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 3 cut(s) 184, 190, 236
BcoDI GTCTC 2 cut(s) 277, 508
BfmI CTRYAG 1 cut(s) 370
BfrI CTTAAG 1 cut(s) 488
BisI GCNGC 3 cut(s) 194, 302, 305
BlsI GCNGC 3 cut(s) 195, 303, 306
Bme1390I CCNGG 3 cut(s) 184, 190, 236
BmgT120I GGNCC 1 cut(s) 186
BmrFI CCNGG 3 cut(s) 184, 190, 236
Bpu10I CCTNAGC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 337
BsaJI CCNNGG 2 cut(s) 99, 188
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 189, 292
Bse1I ACTGG 1 cut(s) 33
BseBI CCWGG 3 cut(s) 184, 190, 236
BseDI CCNNGG 2 cut(s) 99, 188
BseGI GGATG 1 cut(s) 447
BseLI CCNNNNNNNGG 3 cut(s) 183, 189, 292
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 3 cut(s) 23, 89, 147
BseXI GCAGC 2 cut(s) 180, 291
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 4 cut(s) 32, 119, 187, 216
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 393, 394
BslI CCNNNNNNNGG 3 cut(s) 183, 189, 292
BsmAI GTCTC 2 cut(s) 277, 508
BsmFI GGGAC 2 cut(s) 393, 394
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 4 cut(s) 32, 119, 187, 216
Bsp143I GATC 1 cut(s) 277
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 2 cut(s) 302, 461
BspANI GGCC 4 cut(s) 32, 119, 187, 216
BspCNI CTCAG 1 cut(s) 127
BspTI CTTAAG 1 cut(s) 488
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 99, 188
BssMI GATC 1 cut(s) 277
BssNAI GTATAC 1 cut(s) 435
BssNI GRCGYC 1 cut(s) 337
BssSI CACGAG 2 cut(s) 43, 71
BssT1I CCWWGG 1 cut(s) 99
Bst1107I GTATAC 1 cut(s) 435
Bst2BI CACGAG 2 cut(s) 43, 71
Bst2UI CCWGG 3 cut(s) 184, 190, 236
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 4 cut(s) 166, 287, 342, 483
BstACI GRCGYC 1 cut(s) 337
BstAFI CTTAAG 1 cut(s) 488
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 447
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 2 cut(s) 277, 508
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 3 cut(s) 76, 125, 193
BstNI CCWGG 3 cut(s) 184, 190, 236
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 3 cut(s) 182, 188, 234
BstSFI CTRYAG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 180, 291
BstZ17I GTATAC 1 cut(s) 435
BsuRI GGCC 4 cut(s) 32, 119, 187, 216
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 4 cut(s) 76, 257, 326, 391
Csp6I GTAC 1 cut(s) 148
CviAII CATG 5 cut(s) 91, 100, 287, 343, 440
CviJI RGCY 9 cut(s) 32, 58, 79, 105, 119, 187, 193, 216, 239
CviKI_1 RGCY 9 cut(s) 32, 58, 79, 105, 119, 187, 193, 216, 239
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DrdI GACNNNNNNGTC 1 cut(s) 500
DseDI GACNNNNNNGTC 1 cut(s) 500
Eam1104I CTCTTC 4 cut(s) 166, 287, 342, 483
EarI CTCTTC 4 cut(s) 166, 287, 342, 483
Eco130I CCWWGG 1 cut(s) 99
EcoRII CCWGG 3 cut(s) 182, 188, 234
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 5 cut(s) 94, 103, 290, 346, 443
FaqI GGGAC 2 cut(s) 393, 394
FatI CATG 5 cut(s) 90, 99, 286, 342, 439
FblI GTMKAC 2 cut(s) 395, 434
Fnu4HI GCNGC 3 cut(s) 194, 302, 305
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 3 cut(s) 194, 302, 305
GluI GCNGC 3 cut(s) 194, 302, 305
HaeIII GGCC 4 cut(s) 32, 119, 187, 216
HapII CCGG 1 cut(s) 123
HgaI GACGC 4 cut(s) 76, 257, 326, 391
Hin1I GRCGYC 1 cut(s) 337
Hin1II CATG 5 cut(s) 94, 103, 290, 346, 443
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 3 cut(s) 138, 397, 422
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 3 cut(s) 96, 396, 435
Hpy188I TCNGA 2 cut(s) 277, 512
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 3 cut(s) 96, 396, 435
Hpy99I CGWCG 3 cut(s) 113, 215, 342
HpyAV CCTTC 2 cut(s) 61, 268
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 2 cut(s) 150, 310
HpyCH4V TGCA 2 cut(s) 15, 307
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 125, 193
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 2 cut(s) 150, 310
Hsp92I GRCGYC 1 cut(s) 337
Hsp92II CATG 5 cut(s) 94, 103, 290, 346, 443
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 2 cut(s) 76, 125
Lsp1109I GCAGC 2 cut(s) 180, 291
MaeII ACGT 2 cut(s) 150, 310
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 5 cut(s) 153, 274, 359, 470, 473
MlyI GAGTC 2 cut(s) 391, 431
MnlI CCTC 9 cut(s) 15, 67, 125, 128, 167, 227, 343, 464, 477
MseI TTAA 1 cut(s) 489
MspA1I CMGCKG 1 cut(s) 304
MspCI CTTAAG 1 cut(s) 488
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 3 cut(s) 184, 190, 236
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 3 cut(s) 184, 190, 236
MwoI GCNNNNNNNGC 3 cut(s) 76, 125, 193
NcoI CCATGG 1 cut(s) 99
NdeII GATC 1 cut(s) 277
NlaIII CATG 5 cut(s) 94, 103, 290, 346, 443
NspI RCATGY 1 cut(s) 443
PciI ACATGT 1 cut(s) 439
PctI GAATGC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 3 cut(s) 195, 303, 306
PleI GAGTC 2 cut(s) 391, 430
PpsI GAGTC 2 cut(s) 391, 430
PscI ACATGT 1 cut(s) 439
Psp6I CCWGG 3 cut(s) 182, 188, 234
PspGI CCWGG 3 cut(s) 182, 188, 234
PspPI GGNCC 1 cut(s) 186
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SalI GTCGAC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 3 cut(s) 194, 302, 305
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 2 cut(s) 391, 431
ScrFI CCNGG 3 cut(s) 184, 190, 236
SetI ASST 8 cut(s) 53, 81, 153, 233, 260, 313, 456, 469
SfcI CTRYAG 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SsiI CCGC 2 cut(s) 302, 461
StyD4I CCNGG 3 cut(s) 182, 188, 234
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 2 cut(s) 153, 313
TaqI TCGA 2 cut(s) 210, 395
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 258
TseI GCWGC 2 cut(s) 193, 304
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 1 cut(s) 258
Vha464I CTTAAG 1 cut(s) 488
XceI RCATGY 1 cut(s) 443
XmiI GTMKAC 2 cut(s) 395, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.