Rmu_sc0001705.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001705.1
OG0013304
Physical Location & Seq
Forward (+)
90522 .. 91046
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001705.1_g000026.1.cds

Sequence Viewer

Length: 525 bp
atggcggaggactacatgaagggctctatgcgcaagctggccctctggtacactcggaccttcaaacccattatgactcacgacgagctcgagcccatcatggccaccttaggcttcgtatcccggccgccggcggcggcctcgccgaactcggcggtcatgtggaaggagtacgtgttctccgccgccggagggtggaggagcaagtggggtgccgcgaacgagccgcagctgctgccgaggccgaggctgccctacccgagaatcgatgggctccacatctactcctaccgggctttcctcgaggccgttaatttctacctcgagatgtgtgacatctccgatctcttccatataaggtacggagccctctctgctttctcttttcatttctggggttttgcttttcccgattttgttattattactcgtttattctttgagggttttgggttttggctttgctctgctcagtctgctgggtttgtttatgtgttgtgggtgttaattaatcattctgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.09

Weight (kDa)

6.96

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38213
fragaria_vesca FvH4_2g17020
malus_domestica MD05G1143100.v1.1 MD10G1142900.v1.1
prunus_persica Prupe.8G181900_v2.0.a1
pyrus_communis pycom05g13760 pycom10g12280
rosa_chinensis RchiOBHm_Chr6g0281201
rosa_laevigata RLG00000012986
rosa_multiflora Rmu_co8459503.1_g000001 Rmu_sc0001705.1_g000026
rosa_roxburghii Rroxscaffold_7G00187230
rosa_rugosa Rorug06G0139600
rosa_samantha Rh6AG251500 Rh6BG254700 Rh6CG254300 Rh6DG246100
rosa_wichuraiana Rw6G021840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 302
Acc16I TGCGCA 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 212
AccII CGCG 1 cut(s) 218
AciI CCGC 9 cut(s) 5, 128, 134, 137, 155, 183, 186, 216, 227
AcoI YGGCCR 2 cut(s) 102, 125
AfaI GTAC 3 cut(s) 50, 173, 362
AfiI CCNNNNNNNGG 3 cut(s) 130, 192, 195
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 1 cut(s) 64
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 3 cut(s) 37, 88, 232
AluI AGCT 3 cut(s) 37, 88, 232
Alw21I GWGCWC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 235
Ama87I CYCGRG 4 cut(s) 89, 259, 302, 323
AoxI GGCC 6 cut(s) 39, 102, 125, 138, 242, 306
ApeKI GCWGC 4 cut(s) 229, 232, 235, 250
AseI ATTAAT 1 cut(s) 510
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 40, 57
AsuC2I CCSGG 2 cut(s) 124, 293
AvaI CYCGRG 4 cut(s) 89, 259, 302, 323
AvaII GGWCC 1 cut(s) 57
AxyI CCTNAGG 1 cut(s) 109
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 5 cut(s) 26, 90, 96, 276, 370
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 4 cut(s) 219, 222, 237, 241
BccI CCATC 2 cut(s) 104, 263
BceAI ACGGC 1 cut(s) 293
BciVI GTATCC 1 cut(s) 130
BcnI CCSGG 2 cut(s) 124, 293
BfuI GTATCC 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 124, 293
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 4 cut(s) 89, 259, 302, 323
BmgT120I GGNCC 2 cut(s) 40, 57
BmiI GGNNCC 3 cut(s) 214, 275, 367
BmrFI CCNGG 2 cut(s) 124, 293
BpuMI CCSGG 2 cut(s) 124, 293
Bsa29I ATCGAT 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 239, 245
BsaXI ACNNNNNCTCC 6 cut(s) 161, 164, 191, 194, 269, 299
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 192, 195
Bse118I RCCGGY 1 cut(s) 130
Bse21I CCTNAGG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 239, 245
BseLI CCNNNNNNNGG 3 cut(s) 130, 192, 195
BseMII CTCAG 1 cut(s) 485
BseRI GAGGAG 1 cut(s) 214
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 4 cut(s) 219, 222, 237, 241
BseYI CCCAGC 1 cut(s) 479
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 6 cut(s) 41, 104, 127, 140, 244, 308
BshNI GGYRCC 1 cut(s) 212
BshVI ATCGAT 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 4 cut(s) 89, 259, 302, 323
BsiSI CCGG 4 cut(s) 124, 131, 189, 292
BslI CCNNNNNNNGG 3 cut(s) 130, 192, 195
BsnI GGCC 6 cut(s) 41, 104, 127, 140, 244, 308
BsoBI CYCGRG 4 cut(s) 89, 259, 302, 323
Bsp1286I GDGCHC 5 cut(s) 26, 90, 96, 276, 370
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 9 cut(s) 5, 128, 134, 137, 155, 183, 186, 216, 227
BspANI GGCC 6 cut(s) 41, 104, 127, 140, 244, 308
BspCNI CTCAG 1 cut(s) 484
BspDI ATCGAT 1 cut(s) 267
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 3 cut(s) 214, 275, 367
BspT107I GGYRCC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 239, 245
BssMI GATC 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 353
BstAPI GCANNNNNTGC 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 3 cut(s) 35, 39, 132
BstDEI CTNAG 2 cut(s) 109, 471
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 7 cut(s) 30, 232, 235, 241, 250, 374, 476
BstSCI CCNGG 2 cut(s) 122, 291
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 4 cut(s) 219, 222, 237, 241
BstZI CGGCCG 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 109
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 6 cut(s) 41, 104, 127, 140, 244, 308
BsuTUI ATCGAT 1 cut(s) 267
Cac8I GCNNGC 3 cut(s) 35, 39, 132
CaiI CAGNNNCTG 1 cut(s) 235
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 40, 57
ClaI ATCGAT 1 cut(s) 267
Csp6I GTAC 3 cut(s) 49, 172, 361
CviAII CATG 3 cut(s) 16, 100, 160
CviQI GTAC 3 cut(s) 49, 172, 361
DdeI CTNAG 2 cut(s) 109, 471
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
EaeI YGGCCR 2 cut(s) 102, 125
EagI CGGCCG 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 2 cut(s) 20, 172
Ecl136II GAGCTC 1 cut(s) 88
EclXI CGGCCG 1 cut(s) 125
Eco24I GRGCYC 5 cut(s) 26, 90, 96, 276, 370
Eco47I GGWCC 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 88
Eco81I CCTNAGG 1 cut(s) 109
Eco88I CYCGRG 4 cut(s) 89, 259, 302, 323
EcoICRI GAGCTC 1 cut(s) 88
EcoT38I GRGCYC 5 cut(s) 26, 90, 96, 276, 370
FaeI CATG 3 cut(s) 19, 103, 163
FaiI YATR 8 cut(s) 17, 29, 74, 101, 161, 354, 356, 492
FatI CATG 3 cut(s) 15, 99, 159
FriOI GRGCYC 5 cut(s) 26, 90, 96, 276, 370
FspI TGCGCA 1 cut(s) 32
GlaI GCGC 1 cut(s) 32
GsaI CCCAGC 1 cut(s) 483
HaeIII GGCC 6 cut(s) 41, 104, 127, 140, 244, 308
HapII CCGG 4 cut(s) 124, 131, 189, 292
HhaI GCGC 1 cut(s) 33
Hin1II CATG 3 cut(s) 19, 103, 163
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 2 cut(s) 76, 264
HpaII CCGG 4 cut(s) 124, 131, 189, 292
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 3 cut(s) 57, 343, 520
Hpy188III TCNNGA 3 cut(s) 80, 325, 410
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 3 cut(s) 13, 70, 160
HpyCH4IV ACGT 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 7 cut(s) 30, 232, 235, 241, 250, 374, 476
HpyF3I CTNAG 2 cut(s) 109, 471
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 3 cut(s) 19, 103, 163
HspAI GCGC 1 cut(s) 31
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 3 cut(s) 201, 279, 365
LpnPI CCDG 8 cut(s) 23, 31, 137, 144, 202, 305, 379, 465
Lsp1109I GCAGC 4 cut(s) 219, 222, 237, 241
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 332
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 1 cut(s) 340
MhlI GDGCHC 5 cut(s) 26, 90, 96, 276, 370
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 2 cut(s) 313, 507
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 70
Mox20I TGGCCA 1 cut(s) 104
MreI CGCCGGCG 1 cut(s) 130
MroNI GCCGGC 1 cut(s) 130
MscI TGGCCA 1 cut(s) 104
MseI TTAA 4 cut(s) 312, 506, 510, 523
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 4 cut(s) 124, 131, 189, 292
MspR9I CCNGG 2 cut(s) 124, 293
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 7 cut(s) 30, 232, 235, 241, 250, 374, 476
NaeI GCCGGC 1 cut(s) 132
NciI CCSGG 2 cut(s) 124, 293
NdeII GATC 1 cut(s) 343
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 3 cut(s) 19, 103, 163
NlaIV GGNNCC 3 cut(s) 214, 275, 367
NmeAIII GCCGAG 3 cut(s) 131, 264, 270
NmuCI GTSAC 1 cut(s) 332
NsbI TGCGCA 1 cut(s) 32
PacI TTAATTAA 1 cut(s) 510
PaeR7I CTCGAG 3 cut(s) 89, 302, 323
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 264
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 175
PshBI ATTAAT 1 cut(s) 510
Psp124BI GAGCTC 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 479
PspN4I GGNNCC 3 cut(s) 214, 275, 367
PspPI GGNCC 2 cut(s) 40, 57
PspXI VCTCGAGB 2 cut(s) 89, 302
PstNI CAGNNNCTG 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 3 cut(s) 50, 173, 362
RsaNI GTAC 3 cut(s) 49, 172, 361
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 4 cut(s) 312, 506, 510, 523
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 2 cut(s) 40, 57
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 124, 293
SduI GDGCHC 5 cut(s) 26, 90, 96, 276, 370
SetI ASST 8 cut(s) 39, 62, 90, 110, 177, 234, 324, 362
Sfr274I CTCGAG 3 cut(s) 89, 302, 323
SgrAI CRCCGGYG 1 cut(s) 130
SinI GGWCC 1 cut(s) 57
SlaI CTCGAG 3 cut(s) 89, 302, 323
SmlI CTYRAG 3 cut(s) 89, 302, 323
SmoI CTYRAG 3 cut(s) 89, 302, 323
Sse9I AATT 2 cut(s) 313, 507
SsiI CCGC 9 cut(s) 5, 128, 134, 137, 155, 183, 186, 216, 227
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 122, 291
TaiI ACGT 1 cut(s) 177
TaqI TCGA 4 cut(s) 90, 267, 303, 324
TasI AATT 2 cut(s) 313, 507
TauI GCSGC 6 cut(s) 130, 137, 140, 188, 218, 229
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 4 cut(s) 312, 506, 510, 523
Tru9I TTAA 4 cut(s) 312, 506, 510, 523
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 4 cut(s) 229, 232, 235, 250
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 32, 377
TspGWI ACGGA 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 57
VspI ATTAAT 1 cut(s) 510
XhoI CTCGAG 3 cut(s) 89, 302, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.