FvH4_2g17020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013304
Physical Location & Seq
Forward (+)
14749934 .. 14752268
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17020.t1

Sequence Viewer

Length: 624 bp
ATGGCGGAGGACTACATGAAGGGCTCTATGCGCAAGCTGGCCCTCTGGTACACCCGGACCTTCAAACCCATTATGACCCACGACGAGTTGGAGCCCATCATGGCCACCTTGGGGTTCGTGGGTCGGCCGGCGGCGGCGACGGTGCCGAACTCGGCGGTCATGTGGAAGGAGTACGTGTTCTGCGCCGCCGGTGGGTGGAGGAGCAAGTGGGGTGCGGCGAATGAGACGCCGTTGCTGCCGAGGCCGAGACTGCCGTACCCGAGAATCGATGGGCTCCACATCTACTCATACCGGGCTTTCCTCGAGGCCGTTAATTTCTACCTCGAGATGTGTGACATCTCCGATCTCTTCCATATTAGAGGAATGCCACTCCATGATCTCCATCGAATTAAAGACCGAAACAGGAAGTGGCGAAAAATGGAAGAAGATGACAGTGTGTTTGTCTACAGAGAAGGAACTCTGGATCAAGCAACATTCAATCTATATCACTCTCCCAAGACCATCAGCAATAACACCCTTAATAACAGCAATGGCGGTGATGACCACAATTCAATCGTTATCCGGGAGAAAGGCAATAGCACCCCAACAAGCTGCATTGTTCCTTTGAAAGATATCATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.8

Weight (kDa)

8.39

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38213
fragaria_vesca FvH4_2g17020
malus_domestica MD05G1143100.v1.1 MD10G1142900.v1.1
prunus_persica Prupe.8G181900_v2.0.a1
pyrus_communis pycom05g13760 pycom10g12280
rosa_chinensis RchiOBHm_Chr6g0281201
rosa_laevigata RLG00000012986
rosa_multiflora Rmu_co8459503.1_g000001 Rmu_sc0001705.1_g000026
rosa_roxburghii Rroxscaffold_7G00187230
rosa_rugosa Rorug06G0139600
rosa_samantha Rh6AG251500 Rh6BG254700 Rh6CG254300 Rh6DG246100
rosa_wichuraiana Rw6G021840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 302
Acc16I TGCGCA 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 444
AciI CCGC 7 cut(s) 5, 131, 134, 155, 186, 215, 534
AclWI GGATC 1 cut(s) 471
AcoI YGGCCR 2 cut(s) 102, 125
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 3 cut(s) 50, 173, 257
AfiI CCNNNNNNNGG 3 cut(s) 111, 192, 195
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 4 cut(s) 64, 478, 552, 607
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 2 cut(s) 37, 591
AluI AGCT 2 cut(s) 37, 591
Alw26I GTCTC 2 cut(s) 218, 241
AlwI GGATC 1 cut(s) 471
Ama87I CYCGRG 3 cut(s) 259, 302, 323
AoxI GGCC 5 cut(s) 39, 102, 125, 242, 306
ApeKI GCWGC 2 cut(s) 235, 591
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AspLEI GCGC 2 cut(s) 33, 185
AspS9I GGNCC 2 cut(s) 40, 57
AsuC2I CCSGG 3 cut(s) 55, 293, 563
AsuHPI GGTGA 1 cut(s) 548
AvaI CYCGRG 3 cut(s) 259, 302, 323
AvaII GGWCC 1 cut(s) 57
BaeI ACNNNNGTAYC 2 cut(s) 239, 272
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 142
BanII GRGCYC 3 cut(s) 26, 96, 276
BbvI GCAGC 2 cut(s) 222, 578
BccI CCATC 4 cut(s) 104, 263, 390, 509
BceAI ACGGC 3 cut(s) 214, 238, 293
BcnI CCSGG 3 cut(s) 55, 293, 563
BcoDI GTCTC 2 cut(s) 218, 241
BfmI CTRYAG 1 cut(s) 445
BisI GCNGC 6 cut(s) 132, 135, 186, 216, 236, 592
BlsI GCNGC 6 cut(s) 133, 136, 187, 217, 237, 593
Bme1390I CCNGG 3 cut(s) 55, 293, 563
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 3 cut(s) 259, 302, 323
BmgT120I GGNCC 2 cut(s) 40, 57
BmiI GGNNCC 3 cut(s) 93, 144, 275
BmrFI CCNGG 3 cut(s) 55, 293, 563
BpuMI CCSGG 3 cut(s) 55, 293, 563
Bsa29I ATCGAT 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 108, 239
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 192, 195
Bse118I RCCGGY 2 cut(s) 127, 188
Bse3DI GCAATG 1 cut(s) 535
Bse8I GATNNNNATC 1 cut(s) 381
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 108, 239
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 3 cut(s) 111, 192, 195
BseMI GCAATG 1 cut(s) 535
BseRI GAGGAG 1 cut(s) 214
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 222, 578
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 5 cut(s) 41, 104, 127, 244, 308
BshNI GGYRCC 1 cut(s) 142
BshVI ATCGAT 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 128
BsiHKCI CYCGRG 3 cut(s) 259, 302, 323
BsiSI CCGG 5 cut(s) 55, 128, 189, 292, 562
BslI CCNNNNNNNGG 3 cut(s) 111, 192, 195
BsmAI GTCTC 2 cut(s) 218, 241
BsmBI CGTCTC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 5 cut(s) 41, 104, 127, 244, 308
BsoBI CYCGRG 3 cut(s) 259, 302, 323
Bsp1286I GDGCHC 3 cut(s) 26, 96, 276
Bsp143I GATC 3 cut(s) 343, 376, 463
BspACI CCGC 7 cut(s) 5, 131, 134, 155, 186, 215, 534
BspANI GGCC 5 cut(s) 41, 104, 127, 244, 308
BspDI ATCGAT 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 93, 144, 275
BspPI GGATC 1 cut(s) 471
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 535
BsrFI RCCGGY 2 cut(s) 127, 188
BssAI RCCGGY 2 cut(s) 127, 188
BssECI CCNNGG 2 cut(s) 108, 239
BssMI GATC 3 cut(s) 343, 376, 463
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 142, 434
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 3 cut(s) 35, 39, 129
BstHHI GCGC 2 cut(s) 33, 185
BstKTI GATC 3 cut(s) 346, 379, 466
BstMAI GTCTC 2 cut(s) 218, 241
BstMBI GATC 3 cut(s) 343, 376, 463
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 4 cut(s) 30, 235, 241, 250
BstSCI CCNGG 3 cut(s) 53, 291, 561
BstSFI CTRYAG 1 cut(s) 445
BstV1I GCAGC 2 cut(s) 222, 578
BstZI CGGCCG 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 267
BsuRI GGCC 5 cut(s) 41, 104, 127, 244, 308
BsuTUI ATCGAT 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 439
Cac8I GCNNGC 3 cut(s) 35, 39, 129
CfoI GCGC 2 cut(s) 33, 185
Cfr10I RCCGGY 2 cut(s) 127, 188
Cfr13I GGNCC 2 cut(s) 40, 57
ClaI ATCGAT 1 cut(s) 267
CseI GACGC 1 cut(s) 235
Csp6I GTAC 3 cut(s) 49, 172, 256
CviAII CATG 4 cut(s) 16, 100, 160, 374
CviQI GTAC 3 cut(s) 49, 172, 256
DpnI GATC 3 cut(s) 345, 378, 465
DpnII GATC 3 cut(s) 343, 376, 463
EaeI YGGCCR 2 cut(s) 102, 125
EagI CGGCCG 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 3 cut(s) 26, 96, 276
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 125
Eco88I CYCGRG 3 cut(s) 259, 302, 323
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 3 cut(s) 26, 96, 276
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 4 cut(s) 19, 103, 163, 377
FatI CATG 4 cut(s) 15, 99, 159, 373
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 6 cut(s) 132, 135, 186, 216, 236, 592
FriOI GRGCYC 3 cut(s) 26, 96, 276
Fsp4HI GCNGC 6 cut(s) 132, 135, 186, 216, 236, 592
FspI TGCGCA 1 cut(s) 32
GlaI GCGC 2 cut(s) 32, 184
GluI GCNGC 6 cut(s) 132, 135, 186, 216, 236, 592
HaeIII GGCC 5 cut(s) 41, 104, 127, 244, 308
HapII CCGG 5 cut(s) 55, 128, 189, 292, 562
HgaI GACGC 1 cut(s) 235
HhaI GCGC 2 cut(s) 33, 185
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 4 cut(s) 19, 103, 163, 377
Hin6I GCGC 2 cut(s) 31, 183
HinP1I GCGC 2 cut(s) 31, 183
HinfI GANTC 1 cut(s) 264
HpaII CCGG 5 cut(s) 55, 128, 189, 292, 562
HphI GGTGA 1 cut(s) 548
Hpy166II GTNNAC 2 cut(s) 51, 445
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 2 cut(s) 325, 461
Hpy8I GTNNAC 2 cut(s) 51, 445
Hpy99I CGWCG 2 cut(s) 86, 142
HpyAV CCTTC 4 cut(s) 13, 70, 160, 446
HpyCH4III ACNGT 2 cut(s) 142, 434
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 235, 241, 250
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 4 cut(s) 19, 103, 163, 377
HspAI GCGC 2 cut(s) 31, 183
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Kzo9I GATC 3 cut(s) 343, 376, 463
LmnI GCTCC 3 cut(s) 91, 201, 279
LpnPI CCDG 9 cut(s) 23, 31, 68, 141, 202, 305, 388, 446, 575
Lsp1109I GCAGC 2 cut(s) 222, 578
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 332
MalI GATC 3 cut(s) 345, 378, 465
MboI GATC 3 cut(s) 343, 376, 463
MboII GAAGA 3 cut(s) 340, 434, 437
MhlI GDGCHC 3 cut(s) 26, 96, 276
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 3 cut(s) 313, 387, 547
MluNI TGGCCA 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 7 cut(s) 53, 192, 234, 298, 311, 332, 353
Mox20I TGGCCA 1 cut(s) 104
MroNI GCCGGC 1 cut(s) 127
MscI TGGCCA 1 cut(s) 104
MseI TTAA 3 cut(s) 312, 390, 519
Msp20I TGGCCA 1 cut(s) 104
MspI CCGG 5 cut(s) 55, 128, 189, 292, 562
MspR9I CCNGG 3 cut(s) 55, 293, 563
Mva1269I GAATGC 1 cut(s) 369
MwoI GCNNNNNNNGC 4 cut(s) 30, 235, 241, 250
NaeI GCCGGC 1 cut(s) 129
NciI CCSGG 3 cut(s) 55, 293, 563
NdeII GATC 3 cut(s) 343, 376, 463
NgoMIV GCCGGC 1 cut(s) 127
NlaIII CATG 4 cut(s) 19, 103, 163, 377
NlaIV GGNNCC 3 cut(s) 93, 144, 275
NmeAIII GCCGAG 3 cut(s) 131, 264, 270
NmuCI GTSAC 1 cut(s) 332
NsbI TGCGCA 1 cut(s) 32
PaeR7I CTCGAG 2 cut(s) 302, 323
PctI GAATGC 1 cut(s) 369
PdiI GCCGGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 561
PkrI GCNGC 6 cut(s) 133, 136, 187, 217, 237, 593
Ppu21I YACGTR 1 cut(s) 175
PspN4I GGNNCC 3 cut(s) 93, 144, 275
PspPI GGNCC 2 cut(s) 40, 57
PspXI VCTCGAGB 1 cut(s) 302
RsaI GTAC 3 cut(s) 50, 173, 257
RsaNI GTAC 3 cut(s) 49, 172, 256
SaqAI TTAA 3 cut(s) 312, 390, 519
SatI GCNGC 6 cut(s) 132, 135, 186, 216, 236, 592
Sau3AI GATC 3 cut(s) 343, 376, 463
Sau96I GGNCC 2 cut(s) 40, 57
ScrFI CCNGG 3 cut(s) 55, 293, 563
SduI GDGCHC 3 cut(s) 26, 96, 276
SetI ASST 6 cut(s) 39, 62, 110, 177, 324, 593
SfcI CTRYAG 1 cut(s) 445
Sfr274I CTCGAG 2 cut(s) 302, 323
SgrAI CRCCGGYG 1 cut(s) 188
SinI GGWCC 1 cut(s) 57
SlaI CTCGAG 2 cut(s) 302, 323
SmlI CTYRAG 2 cut(s) 302, 323
SmoI CTYRAG 2 cut(s) 302, 323
Sse9I AATT 3 cut(s) 313, 387, 547
SsiI CCGC 7 cut(s) 5, 131, 134, 155, 186, 215, 534
StyD4I CCNGG 3 cut(s) 53, 291, 561
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 142, 434
TaiI ACGT 1 cut(s) 177
TaqI TCGA 4 cut(s) 267, 303, 324, 385
TaqII GACCGA 1 cut(s) 411
TasI AATT 3 cut(s) 313, 387, 547
TauI GCSGC 4 cut(s) 134, 137, 188, 218
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 3 cut(s) 312, 390, 519
Tru9I TTAA 3 cut(s) 312, 390, 519
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 2 cut(s) 235, 591
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 1 cut(s) 439
VpaK11BI GGWCC 1 cut(s) 57
XhoI CTCGAG 2 cut(s) 302, 323
XmiI GTMKAC 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.