pycom05g13760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0013304
Physical Location & Seq
Forward (+)
17311034 .. 17313988
2955 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g13760.1

Sequence Viewer

Length: 729 bp
ATGCTTAGTGCAGGCATGGAAAACTGTCGTCGTTCCGTAATTTCCTCCAACTTGAGTGGCAAGTTACTACCCCTCTTTCAAATACTCTCCCACCACACCACACCCACACACCACAAACCCCTCCAAAACTCGTCCCATTTCCCAAATTCCCCAATCCCTACGTTTCAAGCTCTCCTCCCTTCCTCCCCAGATTTTTCCAAAAATGGAGGACTACATGCGCGGCTGCACGCGGAAGCTGGCGCTCTGGTACACCCGCACCTTCAAGCCCATCATGACCCACGACGAGCTCGAGCCGATCATGGCGACCCTCGGCTTCGTGGGGCTTCCGCCGTCGTCGGCGGCGGCGGCGACGAAGGAGTACGTGTTCTCCTCAGCCGGAGGTTGGCGGAGCAAGTGGGCTCCCCCCGCGGAGGCGCCGCTACCGAGGCCGAGGCTGCCGTACCCGAGAATCGACGGGCTTCATATCTATACGAGCGACATCTCCGATCTCTTCCATGTAAGTGGCGCAAAATGGAAGAAGATGACAGTGTGTTTGTTTACAGAGAAGGAACACTAGATCAGGCAACATTCAATCTGTATCACTCTACTAATAAGAACATCAGCAACAGCACTGCCAGTAATGGTAGCAGCGGCAGTACCGTTACCAGCGACAATTCTATTGTCATTCGGGAGAAAGGCAACAACACCCCTGTCAGCTGCATTGTTCCGTTGAAAGATATCATAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.24

Weight (kDa)

9.3

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38213
fragaria_vesca FvH4_2g17020
malus_domestica MD05G1143100.v1.1 MD10G1142900.v1.1
prunus_persica Prupe.8G181900_v2.0.a1
pyrus_communis pycom05g13760 pycom10g12280
rosa_chinensis RchiOBHm_Chr6g0281201
rosa_laevigata RLG00000012986
rosa_multiflora Rmu_co8459503.1_g000001 Rmu_sc0001705.1_g000026
rosa_roxburghii Rroxscaffold_7G00187230
rosa_rugosa Rorug06G0139600
rosa_samantha Rh6AG251500 Rh6BG254700 Rh6CG254300 Rh6DG246100
rosa_wichuraiana Rw6G021840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AccII CGCG 3 cut(s) 220, 230, 408
AcsI RAATTY 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 4 cut(s) 249, 360, 441, 637
AfiI CCNNNNNNNGG 2 cut(s) 382, 410
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 5 cut(s) 80, 167, 263, 571, 712
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
AluBI AGCT 4 cut(s) 170, 236, 287, 696
AluI AGCT 4 cut(s) 170, 236, 287, 696
Alw21I GWGCWC 1 cut(s) 289
Ama87I CYCGRG 2 cut(s) 288, 443
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 4 cut(s) 223, 434, 627, 696
ApoI RAATTY 1 cut(s) 145
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AspLEI GCGC 4 cut(s) 220, 242, 416, 507
AvaI CYCGRG 2 cut(s) 288, 443
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 2 cut(s) 289, 401
Bbv12I GWGCWC 1 cut(s) 289
BbvCI CCTCAGC 1 cut(s) 371
BbvI GCAGC 4 cut(s) 210, 421, 639, 683
BccI CCATC 1 cut(s) 276
BceAI ACGGC 2 cut(s) 314, 422
BfaI CTAG 1 cut(s) 554
BfoI RGCGCY 2 cut(s) 243, 417
BmeT110I CYCGRG 2 cut(s) 288, 443
BmiI GGNNCC 2 cut(s) 400, 415
Bpu10I CCTNAGC 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 4 cut(s) 308, 406, 423, 429
BsaXI ACNNNNNCTCC 4 cut(s) 348, 351, 378, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 410
Bse1I ACTGG 1 cut(s) 615
BseDI CCNNGG 4 cut(s) 308, 406, 423, 429
BseLI CCNNNNNNNGG 2 cut(s) 382, 410
BseMII CTCAG 1 cut(s) 385
BseNI ACTGG 1 cut(s) 615
BseRI GAGGAG 2 cut(s) 164, 359
BseXI GCAGC 4 cut(s) 210, 421, 639, 683
BsgI GTGCAG 2 cut(s) 30, 209
Bsh1236I CGCG 3 cut(s) 220, 230, 408
BshFI GGCC 1 cut(s) 428
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 289
BsiHKCI CYCGRG 2 cut(s) 288, 443
BsiSI CCGG 1 cut(s) 376
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 382, 410
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 1 cut(s) 428
BsoBI CYCGRG 2 cut(s) 288, 443
Bsp1286I GDGCHC 2 cut(s) 289, 401
Bsp143I GATC 3 cut(s) 295, 485, 556
BspANI GGCC 1 cut(s) 428
BspCNI CTCAG 1 cut(s) 384
BspFNI CGCG 3 cut(s) 220, 230, 408
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 400, 415
BspT107I GGYRCC 1 cut(s) 413
BsrI ACTGG 1 cut(s) 615
BssECI CCNNGG 4 cut(s) 308, 406, 423, 429
BssMI GATC 3 cut(s) 295, 485, 556
BssNI GRCGYC 1 cut(s) 414
Bst4CI ACNGT 3 cut(s) 26, 527, 640
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 13, 228, 238
BstDEI CTNAG 2 cut(s) 5, 371
BstDSI CCRYGG 1 cut(s) 406
BstFNI CGCG 3 cut(s) 220, 230, 408
BstH2I RGCGCY 2 cut(s) 243, 417
BstHHI GCGC 4 cut(s) 220, 242, 416, 507
BstKTI GATC 3 cut(s) 298, 488, 559
BstMBI GATC 3 cut(s) 295, 485, 556
BstMWI GCNNNNNNNGC 4 cut(s) 345, 405, 425, 434
BstNSI RCATGY 1 cut(s) 218
BstUI CGCG 3 cut(s) 220, 230, 408
BstV1I GCAGC 4 cut(s) 210, 421, 639, 683
BstXI CCANNNNNNTGG 1 cut(s) 501
BsuRI GGCC 1 cut(s) 428
BtgI CCRYGG 1 cut(s) 406
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 532, 609
Cac8I GCNNGC 3 cut(s) 13, 228, 238
CciI TCATGA 1 cut(s) 271
CfoI GCGC 4 cut(s) 220, 242, 416, 507
Cfr42I CCGCGG 1 cut(s) 409
Csp6I GTAC 4 cut(s) 248, 359, 440, 636
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 5 cut(s) 16, 215, 272, 299, 495
CviQI GTAC 4 cut(s) 248, 359, 440, 636
DdeI CTNAG 2 cut(s) 5, 371
DinI GGCGCC 1 cut(s) 415
DpnI GATC 3 cut(s) 297, 487, 558
DpnII GATC 3 cut(s) 295, 485, 556
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
EciI GGCGGA 2 cut(s) 316, 401
Ecl136II GAGCTC 1 cut(s) 287
Eco24I GRGCYC 2 cut(s) 289, 401
Eco32I GATATC 1 cut(s) 718
Eco53kI GAGCTC 1 cut(s) 287
Eco88I CYCGRG 2 cut(s) 288, 443
EcoICRI GAGCTC 1 cut(s) 287
EcoRV GATATC 1 cut(s) 718
EcoT38I GRGCYC 2 cut(s) 289, 401
EgeI GGCGCC 1 cut(s) 415
EheI GGCGCC 1 cut(s) 415
FaeI CATG 5 cut(s) 19, 218, 275, 302, 498
FaiI YATR 8 cut(s) 17, 216, 273, 300, 463, 469, 496, 722
FaqI GGGAC 1 cut(s) 118
FatI CATG 5 cut(s) 15, 214, 271, 298, 494
FauI CCCGC 2 cut(s) 261, 413
FriOI GRGCYC 2 cut(s) 289, 401
FspBI CTAG 1 cut(s) 554
GlaI GCGC 4 cut(s) 219, 241, 415, 506
HaeII RGCGCY 2 cut(s) 243, 417
HaeIII GGCC 1 cut(s) 428
HapII CCGG 1 cut(s) 376
HhaI GCGC 4 cut(s) 220, 242, 416, 507
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 5 cut(s) 19, 218, 275, 302, 498
Hin6I GCGC 4 cut(s) 218, 240, 414, 505
HinP1I GCGC 4 cut(s) 218, 240, 414, 505
HinfI GANTC 1 cut(s) 448
HpaII CCGG 1 cut(s) 376
Hpy166II GTNNAC 2 cut(s) 250, 538
Hpy188I TCNGA 1 cut(s) 485
Hpy188III TCNNGA 2 cut(s) 272, 668
Hpy8I GTNNAC 2 cut(s) 250, 538
Hpy99I CGWCG 6 cut(s) 33, 285, 335, 338, 353, 456
HpyAV CCTTC 4 cut(s) 189, 269, 347, 539
HpyCH4III ACNGT 3 cut(s) 26, 527, 640
HpyCH4IV ACGT 2 cut(s) 161, 361
HpyCH4V TGCA 3 cut(s) 11, 226, 699
HpyF10VI GCNNNNNNNGC 4 cut(s) 345, 405, 425, 434
HpyF3I CTNAG 2 cut(s) 5, 371
HpySE526I ACGT 2 cut(s) 161, 361
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 5 cut(s) 19, 218, 275, 302, 498
HspAI GCGC 4 cut(s) 218, 240, 414, 505
KasI GGCGCC 1 cut(s) 413
KspI CCGCGG 1 cut(s) 409
Kzo9I GATC 3 cut(s) 295, 485, 556
LmnI GCTCC 2 cut(s) 388, 404
LpnPI CCDG 8 cut(s) 201, 222, 230, 389, 545, 628, 658, 702
Lsp1109I GCAGC 4 cut(s) 210, 421, 639, 683
MaeI CTAG 1 cut(s) 554
MaeII ACGT 2 cut(s) 161, 361
MaeIII GTNAC 2 cut(s) 63, 640
MalI GATC 3 cut(s) 297, 487, 558
MboI GATC 3 cut(s) 295, 485, 556
MboII GAAGA 3 cut(s) 482, 527, 530
MhlI GDGCHC 2 cut(s) 289, 401
MluCI AATT 3 cut(s) 39, 145, 652
Mly113I GGCGCC 1 cut(s) 414
MmeI TCCRAC 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 499
MspA1I CMGCKG 3 cut(s) 408, 630, 696
MspI CCGG 1 cut(s) 376
MvnI CGCG 3 cut(s) 220, 230, 408
MwoI GCNNNNNNNGC 4 cut(s) 345, 405, 425, 434
NarI GGCGCC 1 cut(s) 414
NdeII GATC 3 cut(s) 295, 485, 556
NlaIII CATG 5 cut(s) 19, 218, 275, 302, 498
NlaIV GGNNCC 2 cut(s) 400, 415
NmeAIII GCCGAG 2 cut(s) 289, 454
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 288
PagI TCATGA 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PfeI GAWTC 1 cut(s) 448
PluTI GGCGCC 1 cut(s) 417
Ppu21I YACGTR 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 400, 415
PspXI VCTCGAGB 1 cut(s) 288
PvuII CAGCTG 1 cut(s) 696
RsaI GTAC 4 cut(s) 249, 360, 441, 637
RsaNI GTAC 4 cut(s) 248, 359, 440, 636
RseI CAYNNNNRTG 1 cut(s) 499
SacI GAGCTC 1 cut(s) 289
SacII CCGCGG 1 cut(s) 409
Sau3AI GATC 3 cut(s) 295, 485, 556
SduI GDGCHC 2 cut(s) 289, 401
SetI ASST 8 cut(s) 164, 172, 238, 261, 289, 364, 383, 698
SfoI GGCGCC 1 cut(s) 415
Sfr274I CTCGAG 1 cut(s) 288
Sfr303I CCGCGG 1 cut(s) 409
SgrBI CCGCGG 1 cut(s) 409
SlaI CTCGAG 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 499
SmlI CTYRAG 2 cut(s) 52, 288
SmoI CTYRAG 2 cut(s) 52, 288
Sse9I AATT 3 cut(s) 39, 145, 652
SspDI GGCGCC 1 cut(s) 413
SspMI CTAG 1 cut(s) 554
SstI GAGCTC 1 cut(s) 289
TaaI ACNGT 3 cut(s) 26, 527, 640
TaiI ACGT 2 cut(s) 164, 364
TaqI TCGA 2 cut(s) 289, 451
TasI AATT 3 cut(s) 39, 145, 652
TauI GCSGC 6 cut(s) 223, 342, 345, 348, 419, 633
TfiI GAWTC 1 cut(s) 448
TscAI CASTG 2 cut(s) 532, 616
TseI GCWGC 4 cut(s) 223, 434, 627, 696
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 2 cut(s) 25, 696
TspRI CASTG 2 cut(s) 532, 616
XapI RAATTY 1 cut(s) 145
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 288
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.