Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002693

Physical Location & Seq

Genomic Coordinates Reverse (-)

19767064 .. 19770969

Gene Structure 3906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGATGGGTTGATGAATATCGGTGGCCTCGAGGACAGAGGAAAAAGACCTAGGAAGTACATTGAGAAGAAACAACCTGGCAAACTCAGTTTTTTTAATTTTTTTACAATTAAATCTCAAGAGATGAAGGAGAAAAACATTAAGGTGGATGTTATGGTTAGGAGACAGCTGGCTAATGCATGGAGGTCTATGAAACCTGAAGAGAAGGCAAAGTATGCTGCGTCATATCCATGTGTTAAAGTTGGTTGTAGGGAATTCAGACATGATTTTTGTGGATTGAAACCTATAATCACCCAATGTCGTCCAGATGTTTTTAAAGATGTCATTTCAACATTTTCTGATGAAAGAAAAGCTGCAGTAGAAGAAATGGGTTTTGGGTTAGTATTGCAGCTTCGCTGTGACCAATTGCAGTGCACCTTGTGCGGTTGGTTGGTTGATAGATTTGATCCTGATGCATCTTCAATTGAGGTACATGGTAAGACATTCAAGCTTAAACCATCTGACTTTGAGAATATAATGGGGGTCAAAGATGGAGGACATGATGTTGAGCTAAGTGACTCAGAGGATAACAACATACACGGACTAAAGATTATCCGTTGTGGAAAAGATAGAAGTCAAATAAGTATGAGAGAAATAGCTAAGAGGTTGAGACAGACAAATATCGTCGATGACACCTTTAGAGTTGGGTTCGTGTTATTTTTGCTGGGCACCTTGCTTTGTCCTTCTTCAATTATATTGGCTTCAAAGTACCTGCAACCATTAAGGGAAACCAGTGATATAAAATTCAAAAATTGGGCGACATTCTCATTCAAATATCTAGTTGAAGGTGTTAGTTCCTTTAAGAATAGAAAACGATCCTGTGTGATCAATGGATGTGTACTATTCTTGCAGCTCTTTTATTTTGATCTCATTGTTCATGGAAGAACCTTTGTAAATAAGTCGTTAGCACCCATTGTTGCATGGGGAGATAAGGAGGCAAATGAATTAATTAAGTGGATCAGGACTCACAAAGGGGGTTTTGAAAGTGTGGACATTACTGTTGTTTCTGACCGTACAGCCTTGATCAGCAAGGAAGATGAGGTGGCCCTGAAGAATGGTCTTGGGAGTGTACACATAAAGGTTACTGCAAATGAACGGATGCAGCGAAAGACAAATGATGAAATGAAAGTGGCTGAATTGGAAGCTAAACTTGACAGTGAGATGAGCAAAATTGAAGGCCTTACTTACTGGCAAGTCTTTCAAGCTACTAACATTTTGGCTACCAGATTTGACCTGCTGAGCGCGTTTCTTCCCATGTCCCAGGAAAGGAAGAAGGATTATGTTTTATATCTCTTAGAGCATGGCACCCATGGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

452

Amino Acids

51.69

Weight (kDa)

8.99

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g50220 FvH4_6g50240 FvH4_6g50250 FvH4_6g50900
rosa_chinensis	RchiOBHm_Chr2g0170461 RchiOBHm_Chr2g0170501 RchiOBHm_Chr2g0170511 RchiOBHm_Chr3g0464021
rosa_laevigata	RLG00000018108 RLG00000019049 RLG00000021959 RLG00000021962 RLG00000021963
rosa_multiflora	Rmu_sc0001705.1_g000024
rosa_roxburghii	Rroxscaffold_2G00081230 Rroxscaffold_2G00081250
rosa_rugosa	Rorug02G0549000 Rorug02G0549100 Rorug02G0549200 Rorug02G0549700 Rorug06G0139600
rosa_samantha	Rh2AG621100 Rh2AG621300 Rh2AG621400 Rh2BG632500 Rh2BG632800 Rh2BG639700 Rh2CG601800 Rh2CG602000 Rh2CG602100 Rh2DG645200 Rh2DG645600 Rh2DG650500 Rh3BG131200 Rh6BG254600 Rh6CG254200
rosa_wichuraiana	Rw2G051490 Rw2G051500 Rw2G051520 Rw2G052110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	29
Acc36I	ACCTGC	2 cut(s)	759, 1281
AccB1I	GGYRCC	2 cut(s)	707, 1343
AccII	CGCG	1 cut(s)	1283
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	3 cut(s)	440, 849, 1004
AcsI	RAATTY	2 cut(s)	254, 782
AcuI	CTGAAG	2 cut(s)	219, 1109
AdeI	CACNNNGTG	1 cut(s)	420
AfaI	GTAC	6 cut(s)	59, 471, 749, 879, 1054, 1110
AfiI	CCNNNNNNNGG	1 cut(s)	1305
AjnI	CCWGG	2 cut(s)	76, 1299
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
AluBI	AGCT	9 cut(s)	169, 353, 391, 490, 550, 638, 892, 1184, 1244
AluI	AGCT	9 cut(s)	169, 353, 391, 490, 550, 638, 892, 1184, 1244
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	2 cut(s)	157, 643
Alw44I	GTGCAC	1 cut(s)	412
AlwI	GGATC	3 cut(s)	440, 849, 1004
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	3 cut(s)	25, 1083, 1216
ApaLI	GTGCAC	1 cut(s)	412
ApeKI	GCWGC	5 cut(s)	218, 353, 388, 889, 1141
ApoI	RAATTY	2 cut(s)	254, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
AseI	ATTAAT	1 cut(s)	986
AspA2I	CCTAGG	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	1283
AspS9I	GGNCC	1 cut(s)	1084
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	29
AvrII	CCTAGG	1 cut(s)	50
BaeGI	GKGCMC	2 cut(s)	416, 710
BanI	GGYRCC	2 cut(s)	707, 1343
BarI	GAAGNNNNNNTAC	2 cut(s)	375, 407
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	5 cut(s)	205, 340, 400, 901, 1153
BccI	CCATC	2 cut(s)	505, 524
BciT130I	CCWGG	2 cut(s)	78, 1301
BclI	TGATCA	2 cut(s)	864, 1062
BcoDI	GTCTC	2 cut(s)	157, 643
BfaI	CTAG	2 cut(s)	51, 818
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	2 cut(s)	759, 1281
BisI	GCNGC	5 cut(s)	219, 354, 389, 890, 1142
BlnI	CCTAGG	1 cut(s)	50
BlpI	GCTNAGC	1 cut(s)	1277
BlsI	GCNGC	5 cut(s)	220, 355, 390, 891, 1143
Bme1390I	CCNGG	2 cut(s)	78, 1301
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	1084
BmiI	GGNNCC	2 cut(s)	709, 1345
BmrFI	CCNGG	2 cut(s)	78, 1301
BmsI	GCATC	3 cut(s)	442, 464, 1128
Bpu1102I	GCTNAGC	1 cut(s)	1277
BpuEI	CTTGAG	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	50, 1299, 1348
Bsc4I	CCNNNNNNNGG	1 cut(s)	1305
Bse1I	ACTGG	2 cut(s)	771, 1232
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	78, 1301
BseDI	CCNNGG	3 cut(s)	50, 1299, 1348
BseGI	GGATG	4 cut(s)	10, 154, 878, 1143
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	1305
BseMII	CTCAG	3 cut(s)	100, 573, 1268
BseNI	ACTGG	2 cut(s)	771, 1232
BseSI	GKGCMC	2 cut(s)	416, 710
BseXI	GCAGC	5 cut(s)	205, 340, 400, 901, 1153
BseYI	CCCAGC	1 cut(s)	703
Bsh1236I	CGCG	1 cut(s)	1283
BshFI	GGCC	3 cut(s)	27, 1085, 1218
BshNI	GGYRCC	2 cut(s)	707, 1343
BsiHKAI	GWGCWC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	1282
BslI	CCNNNNNNNGG	1 cut(s)	1305
BsmAI	GTCTC	2 cut(s)	157, 643
BsmFI	GGGAC	1 cut(s)	1282
BsnI	GGCC	3 cut(s)	27, 1085, 1218
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	416, 710
Bsp1407I	TGTACA	1 cut(s)	1108
Bsp143I	GATC	6 cut(s)	445, 854, 864, 904, 996, 1062
Bsp1720I	GCTNAGC	1 cut(s)	1277
Bsp19I	CCATGG	1 cut(s)	1348
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	3 cut(s)	27, 1085, 1218
BspCNI	CTCAG	3 cut(s)	99, 572, 1269
BspFNI	CGCG	1 cut(s)	1283
BspLI	GGNNCC	2 cut(s)	709, 1345
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	2 cut(s)	759, 1281
BspPI	GGATC	3 cut(s)	440, 849, 1004
BspT107I	GGYRCC	2 cut(s)	707, 1343
BsrGI	TGTACA	1 cut(s)	1108
BsrI	ACTGG	2 cut(s)	771, 1232
BssECI	CCNNGG	3 cut(s)	50, 1299, 1348
BssMI	GATC	6 cut(s)	445, 854, 864, 904, 996, 1062
BssT1I	CCWWGG	2 cut(s)	50, 1348
Bst2UI	CCWGG	2 cut(s)	78, 1301
Bst4CI	ACNGT	3 cut(s)	1039, 1052, 1196
Bst6I	CTCTTC	1 cut(s)	195
BstAPI	GCANNNNNTGC	2 cut(s)	215, 420
BstAUI	TGTACA	1 cut(s)	1108
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	6 cut(s)	86, 551, 559, 639, 1277, 1333
BstDSI	CCRYGG	1 cut(s)	1348
BstF5I	GGATG	4 cut(s)	10, 154, 878, 1143
BstFNI	CGCG	1 cut(s)	1283
BstHHI	GCGC	1 cut(s)	1283
BstKTI	GATC	6 cut(s)	448, 857, 867, 907, 999, 1065
BstMAI	GTCTC	2 cut(s)	157, 643
BstMBI	GATC	6 cut(s)	445, 854, 864, 904, 996, 1062
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 420, 1350
BstNI	CCWGG	2 cut(s)	78, 1301
BstSCI	CCNGG	2 cut(s)	76, 1299
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	2 cut(s)	416, 710
BstUI	CGCG	1 cut(s)	1283
BstV1I	GCAGC	5 cut(s)	205, 340, 400, 901, 1153
BsuRI	GGCC	3 cut(s)	27, 1085, 1218
BtgI	CCRYGG	1 cut(s)	1348
BtsCI	GGATG	4 cut(s)	10, 154, 878, 1143
BtsI	GCAGTG	1 cut(s)	416
BtsIMutI	CAGTG	3 cut(s)	416, 778, 1201
BveI	ACCTGC	2 cut(s)	759, 1281
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	1283
Cfr13I	GGNCC	1 cut(s)	1084
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	6 cut(s)	58, 470, 748, 878, 1053, 1109
CviQI	GTAC	6 cut(s)	58, 470, 748, 878, 1053, 1109
DdeI	CTNAG	6 cut(s)	86, 551, 559, 639, 1277, 1333
DpnI	GATC	6 cut(s)	447, 856, 866, 906, 998, 1064
DpnII	GATC	6 cut(s)	445, 854, 864, 904, 996, 1062
DraI	TTTAAA	1 cut(s)	316
DraIII	CACNNNGTG	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	50, 1348
Eco147I	AGGCCT	1 cut(s)	1218
Eco57I	CTGAAG	2 cut(s)	219, 1109
Eco88I	CYCGRG	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	76, 1299
EcoT14I	CCWWGG	2 cut(s)	50, 1348
EcoT22I	ATGCAT	2 cut(s)	181, 457
ErhI	CCWWGG	2 cut(s)	50, 1348
FalI	AAGNNNNNCTT	2 cut(s)	1173, 1205
FaqI	GGGAC	1 cut(s)	1282
FbaI	TGATCA	2 cut(s)	864, 1062
Fnu4HI	GCNGC	5 cut(s)	219, 354, 389, 890, 1142
FokI	GGATG	4 cut(s)	17, 161, 885, 1150
Fsp4HI	GCNGC	5 cut(s)	219, 354, 389, 890, 1142
FspBI	CTAG	2 cut(s)	51, 818
GlaI	GCGC	1 cut(s)	1282
GluI	GCNGC	5 cut(s)	219, 354, 389, 890, 1142
GsaI	CCCAGC	1 cut(s)	707
HaeIII	GGCC	3 cut(s)	27, 1085, 1218
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	1283
Hin6I	GCGC	1 cut(s)	1281
HinP1I	GCGC	1 cut(s)	1281
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	557, 1003
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	5 cut(s)	414, 878, 1030, 1109, 1111
Hpy188I	TCNGA	5 cut(s)	260, 340, 502, 562, 1048
Hpy188III	TCNNGA	4 cut(s)	119, 305, 449, 1000
Hpy8I	GTNNAC	5 cut(s)	414, 878, 1030, 1109, 1111
Hpy99I	CGWCG	1 cut(s)	668
HpyAV	CCTTC	6 cut(s)	121, 199, 732, 818, 1208, 1306
HpyCH4III	ACNGT	3 cut(s)	1039, 1052, 1196
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 420, 1350
HpyF3I	CTNAG	6 cut(s)	86, 551, 559, 639, 1277, 1333
HspAI	GCGC	1 cut(s)	1281
Ksp22I	TGATCA	2 cut(s)	864, 1062
Kzo9I	GATC	6 cut(s)	445, 854, 864, 904, 996, 1062
Lsp1109I	GCAGC	5 cut(s)	205, 340, 400, 901, 1153
LweI	GCATC	3 cut(s)	442, 464, 1128
MaeI	CTAG	2 cut(s)	51, 818
MaeIII	GTNAC	3 cut(s)	398, 554, 1120
MalI	GATC	6 cut(s)	447, 856, 866, 906, 998, 1064
MboI	GATC	6 cut(s)	445, 854, 864, 904, 996, 1062
MfeI	CAATTG	2 cut(s)	404, 462
MhlI	GDGCHC	2 cut(s)	416, 710
MlyI	GAGTC	2 cut(s)	551, 997
Mph1103I	ATGCAT	2 cut(s)	181, 457
MslI	CAYNNNNRTG	2 cut(s)	143, 229
MspA1I	CMGCKG	1 cut(s)	169
MspR9I	CCNGG	2 cut(s)	78, 1301
MunI	CAATTG	2 cut(s)	404, 462
MvaI	CCWGG	2 cut(s)	78, 1301
MvnI	CGCG	1 cut(s)	1283
MwoI	GCNNNNNNNGC	3 cut(s)	215, 420, 1350
NcoI	CCATGG	1 cut(s)	1348
NdeII	GATC	6 cut(s)	445, 854, 864, 904, 996, 1062
NlaIV	GGNNCC	2 cut(s)	709, 1345
NmuCI	GTSAC	2 cut(s)	398, 554
NsiI	ATGCAT	2 cut(s)	181, 457
PacI	TTAATTAA	1 cut(s)	990
PaeR7I	CTCGAG	1 cut(s)	29
PceI	AGGCCT	1 cut(s)	1218
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 1141
PkrI	GCNGC	5 cut(s)	220, 355, 390, 891, 1143
PleI	GAGTC	2 cut(s)	551, 997
PpsI	GAGTC	2 cut(s)	551, 997
PshBI	ATTAAT	1 cut(s)	986
Psp6I	CCWGG	2 cut(s)	76, 1299
PspFI	CCCAGC	1 cut(s)	703
PspGI	CCWGG	2 cut(s)	76, 1299
PspN4I	GGNNCC	2 cut(s)	709, 1345
PspPI	GGNCC	1 cut(s)	1084
PspXI	VCTCGAGB	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	6 cut(s)	59, 471, 749, 879, 1054, 1110
RsaNI	GTAC	6 cut(s)	58, 470, 748, 878, 1053, 1109
RseI	CAYNNNNRTG	2 cut(s)	143, 229
SatI	GCNGC	5 cut(s)	219, 354, 389, 890, 1142
Sau3AI	GATC	6 cut(s)	445, 854, 864, 904, 996, 1062
Sau96I	GGNCC	1 cut(s)	1084
SchI	GAGTC	2 cut(s)	551, 997
ScrFI	CCNGG	2 cut(s)	78, 1301
SduI	GDGCHC	2 cut(s)	416, 710
SfaNI	GCATC	3 cut(s)	442, 464, 1128
SfcI	CTRYAG	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	143, 229
SmlI	CTYRAG	2 cut(s)	29, 117
SmoI	CTYRAG	2 cut(s)	29, 117
SseBI	AGGCCT	1 cut(s)	1218
SsiI	CCGC	1 cut(s)	423
SspMI	CTAG	2 cut(s)	51, 818
StuI	AGGCCT	1 cut(s)	1218
StyD4I	CCNGG	2 cut(s)	76, 1299
StyI	CCWWGG	2 cut(s)	50, 1348
TaaI	ACNGT	3 cut(s)	1039, 1052, 1196
TaqI	TCGA	2 cut(s)	30, 666
TatI	WGTACW	3 cut(s)	57, 877, 1108
TscAI	CASTG	3 cut(s)	416, 778, 1201
TseFI	GTSAC	2 cut(s)	398, 554
TseI	GCWGC	5 cut(s)	218, 353, 388, 889, 1141
Tsp45I	GTSAC	2 cut(s)	398, 554
TspDTI	ATGAA	9 cut(s)	29, 140, 206, 357, 905, 996, 1146, 1173, 1178
TspGWI	ACGGA	3 cut(s)	584, 594, 1150
TspRI	CASTG	3 cut(s)	416, 778, 1201
VneI	GTGCAC	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	986
XapI	RAATTY	2 cut(s)	254, 782
XhoI	CTCGAG	1 cut(s)	29
XmaJI	CCTAGG	1 cut(s)	50
XspI	CTAG	2 cut(s)	51, 818
Zsp2I	ATGCAT	2 cut(s)	181, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.