No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g50220 FvH4_6g50240 FvH4_6g50250 FvH4_6g50900 |
| rosa_chinensis | RchiOBHm_Chr2g0170461 RchiOBHm_Chr2g0170501 RchiOBHm_Chr2g0170511 RchiOBHm_Chr3g0464021 |
| rosa_laevigata | RLG00000018108 RLG00000019049 RLG00000021959 RLG00000021962 RLG00000021963 |
| rosa_multiflora | Rmu_sc0001705.1_g000024 |
| rosa_roxburghii | Rroxscaffold_2G00081230 Rroxscaffold_2G00081250 |
| rosa_rugosa | Rorug02G0549000 Rorug02G0549100 Rorug02G0549200 Rorug02G0549700 Rorug06G0139600 |
| rosa_samantha | Rh2AG621100 Rh2AG621300 Rh2AG621400 Rh2BG632500 Rh2BG632800 Rh2BG639700 Rh2CG601800 Rh2CG602000 Rh2CG602100 Rh2DG645200 Rh2DG645600 Rh2DG650500 Rh3BG131200 Rh6BG254600 Rh6CG254200 |
| rosa_wichuraiana | Rw2G051490 Rw2G051500 Rw2G051520 Rw2G052110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 327 |
| AccB1I | GGYRCC | 1 cut(s) | 327 |
| AciI | CCGC | 1 cut(s) | 125 |
| AcsI | RAATTY | 2 cut(s) | 163, 191 |
| AcuI | CTGAAG | 2 cut(s) | 113, 119 |
| AfaI | GTAC | 3 cut(s) | 49, 311, 329 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 158, 215 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 113, 146 |
| AluBI | AGCT | 1 cut(s) | 88 |
| AluI | AGCT | 1 cut(s) | 88 |
| ApoI | RAATTY | 2 cut(s) | 163, 191 |
| Asp718I | GGTACC | 1 cut(s) | 327 |
| AsuHPI | GGTGA | 1 cut(s) | 251 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 39, 72 |
| BanI | GGYRCC | 1 cut(s) | 327 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 311, 343 |
| BbsI | GAAGAC | 1 cut(s) | 107 |
| BccI | CCATC | 1 cut(s) | 278 |
| BfmI | CTRYAG | 1 cut(s) | 51 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BmiI | GGNNCC | 1 cut(s) | 329 |
| BpiI | GAAGAC | 1 cut(s) | 107 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 371, 403 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 158, 215 |
| Bse1I | ACTGG | 1 cut(s) | 176 |
| BseGI | GGATG | 1 cut(s) | 286 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 158, 215 |
| BseNI | ACTGG | 1 cut(s) | 176 |
| BshNI | GGYRCC | 1 cut(s) | 327 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 158, 215 |
| BspACI | CCGC | 1 cut(s) | 125 |
| BspHI | TCATGA | 3 cut(s) | 181, 340, 400 |
| BspLI | GGNNCC | 1 cut(s) | 329 |
| BspT107I | GGYRCC | 1 cut(s) | 327 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 2 cut(s) | 55, 239 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstDEI | CTNAG | 1 cut(s) | 43 |
| BstF5I | GGATG | 1 cut(s) | 286 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 94 |
| BstSFI | CTRYAG | 1 cut(s) | 51 |
| BstV2I | GAAGAC | 1 cut(s) | 107 |
| BtsCI | GGATG | 1 cut(s) | 286 |
| BtsIMutI | CAGTG | 1 cut(s) | 60 |
| CciI | TCATGA | 3 cut(s) | 181, 340, 400 |
| Csp6I | GTAC | 3 cut(s) | 48, 310, 328 |
| CviAII | CATG | 6 cut(s) | 182, 229, 260, 269, 341, 401 |
| CviJI | RGCY | 4 cut(s) | 5, 88, 97, 409 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 88, 97, 409 |
| CviQI | GTAC | 3 cut(s) | 48, 310, 328 |
| DdeI | CTNAG | 1 cut(s) | 43 |
| Eco57I | CTGAAG | 2 cut(s) | 113, 119 |
| EcoRI | GAATTC | 1 cut(s) | 191 |
| FaeI | CATG | 6 cut(s) | 185, 232, 263, 272, 344, 404 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 72, 104 |
| FatI | CATG | 6 cut(s) | 181, 228, 259, 268, 340, 400 |
| FauNDI | CATATG | 1 cut(s) | 67 |
| FokI | GGATG | 1 cut(s) | 293 |
| Hin1II | CATG | 6 cut(s) | 185, 232, 263, 272, 344, 404 |
| HindIII | AAGCTT | 1 cut(s) | 86 |
| HinfI | GANTC | 3 cut(s) | 133, 232, 247 |
| HphI | GGTGA | 1 cut(s) | 251 |
| Hpy188I | TCNGA | 3 cut(s) | 132, 280, 391 |
| Hpy188III | TCNNGA | 4 cut(s) | 182, 209, 341, 401 |
| HpyAV | CCTTC | 3 cut(s) | 179, 313, 353 |
| HpyCH4III | ACNGT | 2 cut(s) | 55, 239 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 94 |
| HpyF3I | CTNAG | 1 cut(s) | 43 |
| Hsp92II | CATG | 6 cut(s) | 185, 232, 263, 272, 344, 404 |
| KpnI | GGTACC | 1 cut(s) | 331 |
| LpnPI | CCDG | 3 cut(s) | 165, 189, 222 |
| MboII | GAAGA | 2 cut(s) | 92, 112 |
| MluCI | AATT | 4 cut(s) | 156, 163, 191, 223 |
| MnlI | CCTC | 4 cut(s) | 235, 309, 337, 373 |
| MseI | TTAA | 3 cut(s) | 74, 90, 418 |
| MslI | CAYNNNNRTG | 1 cut(s) | 258 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 94 |
| NdeI | CATATG | 1 cut(s) | 67 |
| NlaIII | CATG | 6 cut(s) | 185, 232, 263, 272, 344, 404 |
| NlaIV | GGNNCC | 1 cut(s) | 329 |
| PagI | TCATGA | 3 cut(s) | 181, 340, 400 |
| PfeI | GAWTC | 3 cut(s) | 133, 232, 247 |
| PspN4I | GGNNCC | 1 cut(s) | 329 |
| RsaI | GTAC | 3 cut(s) | 49, 311, 329 |
| RsaNI | GTAC | 3 cut(s) | 48, 310, 328 |
| RseI | CAYNNNNRTG | 1 cut(s) | 258 |
| SaqAI | TTAA | 3 cut(s) | 74, 90, 418 |
| SetI | ASST | 4 cut(s) | 49, 90, 109, 324 |
| SfcI | CTRYAG | 1 cut(s) | 51 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 258 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 4 cut(s) | 156, 163, 191, 223 |
| SsiI | CCGC | 1 cut(s) | 125 |
| TaaI | ACNGT | 2 cut(s) | 55, 239 |
| TasI | AATT | 4 cut(s) | 156, 163, 191, 223 |
| TfiI | GAWTC | 3 cut(s) | 133, 232, 247 |
| Tru1I | TTAA | 3 cut(s) | 74, 90, 418 |
| Tru9I | TTAA | 3 cut(s) | 74, 90, 418 |
| TscAI | CASTG | 1 cut(s) | 60 |
| TspDTI | ATGAA | 5 cut(s) | 156, 170, 198, 245, 285 |
| TspRI | CASTG | 1 cut(s) | 60 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| XapI | RAATTY | 2 cut(s) | 163, 191 |