Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002693

Physical Location & Seq

Genomic Coordinates Reverse (-)

79206964 .. 79208825

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G051490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGCTCGGAACGTATACCTCTTCGTCGAGACCAGGAGGCATCAACAACCAACTTCACCACCAGGAAAACATCATCTCTTCAAACATGAATCGCATACCAATTGCATGCACGTTTCCTTGGCGTCAAGATGAGATGGTTTCAGCTTATGAGTTTGAGAACGAAAATGCCAAGAAGCCGAAGGTTTACGATGACGAGAAAACTAATCTTCAGAATTTTATCGACTGGATCTGGAACACCCTCCCTAAACCTAAGCCGGAGACGCCGCCAAATCCGACCCCGAAAGTGCCGCAAAATCCGATGCCAAATGTGCCACCACCTTCAAAAAAGGCACCCCCACCACCACCGGAGAAAGAAGGAGAAGACGTTGGTAAAAATAAGATTTCAGCTCCCCTTACTTCAAGACAACAACTTATTGGTTCCATCCCCTTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.33

Weight (kDa)

6.73

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g50220 FvH4_6g50240 FvH4_6g50250 FvH4_6g50900
rosa_chinensis	RchiOBHm_Chr2g0170461 RchiOBHm_Chr2g0170501 RchiOBHm_Chr2g0170511 RchiOBHm_Chr3g0464021
rosa_laevigata	RLG00000018108 RLG00000019049 RLG00000021959 RLG00000021962 RLG00000021963
rosa_multiflora	Rmu_sc0001705.1_g000024
rosa_roxburghii	Rroxscaffold_2G00081230 Rroxscaffold_2G00081250
rosa_rugosa	Rorug02G0549000 Rorug02G0549100 Rorug02G0549200 Rorug02G0549700 Rorug06G0139600
rosa_samantha	Rh2AG621100 Rh2AG621300 Rh2AG621400 Rh2BG632500 Rh2BG632800 Rh2BG639700 Rh2CG601800 Rh2CG602000 Rh2CG602100 Rh2DG645200 Rh2DG645600 Rh2DG650500 Rh3BG131200 Rh6BG254600 Rh6CG254200
rosa_wichuraiana	Rw2G051490 Rw2G051500 Rw2G051520 Rw2G052110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	2 cut(s)	266, 290
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	194
AcyI	GRCGYC	2 cut(s)	124, 263
AgsI	TTSAA	3 cut(s)	84, 324, 402
AjnI	CCWGG	2 cut(s)	34, 63
AluBI	AGCT	3 cut(s)	7, 146, 389
AluI	AGCT	3 cut(s)	7, 146, 389
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	25, 254
AlwI	GGATC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	2 cut(s)	130, 431
BciT130I	CCWGG	2 cut(s)	36, 65
BcoDI	GTCTC	2 cut(s)	25, 254
BisI	GCNGC	2 cut(s)	266, 290
BlsI	GCNGC	2 cut(s)	267, 291
Bme1390I	CCNGG	2 cut(s)	36, 65
BmiI	GGNNCC	2 cut(s)	333, 421
BmrFI	CCNGG	2 cut(s)	36, 65
BmsI	GCATC	2 cut(s)	51, 291
BpiI	GAAGAC	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	252
BsaHI	GRCGYC	2 cut(s)	124, 263
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bse1I	ACTGG	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	36, 65
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	257, 347
BsmAI	GTCTC	2 cut(s)	25, 254
BsmBI	CGTCTC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	2 cut(s)	266, 290
BspLI	GGNNCC	2 cut(s)	333, 421
BspPI	GGATC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	1 cut(s)	228
BssNAI	GTATAC	1 cut(s)	18
BssNI	GRCGYC	2 cut(s)	124, 263
BssT1I	CCWWGG	1 cut(s)	119
Bst1107I	GTATAC	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	36, 65
Bst6I	CTCTTC	2 cut(s)	28, 85
BstACI	GRCGYC	2 cut(s)	124, 263
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	423
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	2 cut(s)	25, 254
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 310
BstNI	CCWGG	2 cut(s)	36, 65
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	34, 63
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BstZ17I	GTATAC	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	109
CseI	GACGC	2 cut(s)	113, 271
CviAII	CATG	2 cut(s)	88, 108
CviJI	RGCY	5 cut(s)	7, 146, 178, 256, 389
CviKI_1	RGCY	5 cut(s)	7, 146, 178, 256, 389
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	28, 85
EarI	CTCTTC	2 cut(s)	28, 85
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	34, 63
EcoT14I	CCWWGG	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	119
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	2 cut(s)	91, 111
FaiI	YATR	5 cut(s)	18, 89, 98, 109, 150
FatI	CATG	2 cut(s)	87, 107
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	266, 290
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	266, 290
GluI	GCNGC	2 cut(s)	266, 290
HapII	CCGG	2 cut(s)	257, 347
HgaI	GACGC	2 cut(s)	113, 271
Hin1I	GRCGYC	2 cut(s)	124, 263
Hin1II	CATG	2 cut(s)	91, 111
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	257, 347
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	18, 187
Hpy188I	TCNGA	4 cut(s)	11, 213, 276, 300
Hpy188III	TCNNGA	4 cut(s)	30, 128, 232, 402
Hpy8I	GTNNAC	2 cut(s)	18, 187
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	3 cut(s)	175, 330, 350
HpyCH4IV	ACGT	3 cut(s)	14, 113, 366
HpyCH4V	TGCA	2 cut(s)	107, 111
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 310
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	3 cut(s)	14, 113, 366
Hsp92I	GRCGYC	2 cut(s)	124, 263
Hsp92II	CATG	2 cut(s)	91, 111
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	4, 394
LpnPI	CCDG	8 cut(s)	21, 48, 50, 77, 211, 217, 270, 360
LweI	GCATC	2 cut(s)	51, 291
MaeII	ACGT	3 cut(s)	14, 113, 366
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	4 cut(s)	15, 72, 200, 374
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	2 cut(s)	102, 214
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	3 cut(s)	31, 32, 251
MspI	CCGG	2 cut(s)	257, 347
MspR9I	CCNGG	2 cut(s)	36, 65
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	36, 65
MwoI	GCNNNNNNNGC	2 cut(s)	262, 310
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	2 cut(s)	91, 111
NlaIV	GGNNCC	2 cut(s)	333, 421
NspI	RCATGY	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	267, 291
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	34, 63
PspGI	CCWGG	2 cut(s)	34, 63
PspN4I	GGNNCC	2 cut(s)	333, 421
PsuI	RGATCY	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	9
SatI	GCNGC	2 cut(s)	266, 290
Sau3AI	GATC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	36, 65
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	51, 291
SphI	GCATGC	1 cut(s)	111
Sse9I	AATT	2 cut(s)	102, 214
SsiI	CCGC	2 cut(s)	266, 290
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	34, 63
StyI	CCWWGG	1 cut(s)	119
TaiI	ACGT	3 cut(s)	17, 116, 369
TaqI	TCGA	2 cut(s)	29, 222
TasI	AATT	2 cut(s)	102, 214
TauI	GCSGC	2 cut(s)	268, 292
TfiI	GAWTC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	104
XapI	RAATTY	1 cut(s)	214
XceI	RCATGY	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.