RchiOBHm_Chr3g0464021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002693
Physical Location & Seq
Forward (+)
11280770 .. 11284061
3292 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43031

Sequence Viewer

Length: 591 bp
ATGGTCTTCAAAATTTTGCTCTTCCTCTTCTTTGCCATTCTCTTAGTTACTACAAAGGTTTCAGCTGATGAATTTGAGAATGGACAGGCCAAGAAGCCGAAGGCACCAACTCCCGACAACATGCAAACTCCACCACTTTCAATAAACAAGAAAATCATGAGTATTGGGATGTTCCGCCCGATCGTGTTCCCGCGTGGGGGGTTCGGCGGCGGAAGGGCATTTCCAAAGCCGAGGCCGAATCCGAATCCGAATCCAAAGCTGACGCCCAAGCAGCCGCCCCAAAATGACAAAAAGCCAAACCCGACGCCAAAGCAGCCGCCCCAAAATGACAAAAAGCCAAAGCCGAAGGAAGAGAATAAGGACAAGCCAGATGATAAGGACCTTCAGGTACCTTCCCAACCTGACTCCCCTTCGCCACCTCCACCATCTTCAGCACCAGCTCCCTCACCTCAAGATGAGAACGTGCCGGCTTCGGCACCCGGAGAGACACCAGCTCCCCCACCTCAAGATGACAACTTACCGGCCTCGGCACCCGTAGAGACACCAGCTCCCTCACCTCAAGATGACAACGTATTGGCACCATCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.07

Weight (kDa)

9.05

Isoelectric Point (pI)

68.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 388
AccB1I GGYRCC 5 cut(s) 103, 388, 475, 529, 577
AccII CGCG 1 cut(s) 193
AciI CCGC 6 cut(s) 175, 191, 207, 210, 275, 317
AcsI RAATTY 2 cut(s) 12, 71
AcuI CTGAAG 2 cut(s) 368, 414
AcyI GRCGYC 2 cut(s) 263, 305
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 2 cut(s) 196, 197
AgsI TTSAA 2 cut(s) 10, 141
AluBI AGCT 5 cut(s) 65, 259, 440, 494, 548
AluI AGCT 5 cut(s) 65, 259, 440, 494, 548
Alw26I GTCTC 2 cut(s) 479, 533
AoxI GGCC 3 cut(s) 87, 233, 522
ApeKI GCWGC 2 cut(s) 271, 313
ApoI RAATTY 2 cut(s) 12, 71
Asp718I GGTACC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 379
AsuC2I CCSGG 1 cut(s) 480
AsuHPI GGTGA 2 cut(s) 438, 546
AvaII GGWCC 1 cut(s) 379
BanI GGYRCC 5 cut(s) 103, 388, 475, 529, 577
BbvI GCAGC 2 cut(s) 283, 325
BccI CCATC 2 cut(s) 433, 589
BcnI CCSGG 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 479, 533
BisI GCNGC 5 cut(s) 208, 272, 275, 314, 317
BlsI GCNGC 5 cut(s) 209, 273, 276, 315, 318
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 5 cut(s) 105, 390, 477, 531, 579
BmrFI CCNGG 1 cut(s) 480
BpuEI CTTGAG 3 cut(s) 435, 489, 543
BpuMI CCSGG 1 cut(s) 480
BsaHI GRCGYC 2 cut(s) 263, 305
BsaJI CCNNGG 2 cut(s) 230, 525
BsaXI ACNNNNNCTCC 4 cut(s) 478, 508, 532, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 197
Bse118I RCCGGY 2 cut(s) 466, 520
BseDI CCNNGG 2 cut(s) 230, 525
BseGI GGATG 2 cut(s) 174, 581
BseLI CCNNNNNNNGG 2 cut(s) 196, 197
BseXI GCAGC 2 cut(s) 283, 325
Bsh1236I CGCG 1 cut(s) 193
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 3 cut(s) 89, 235, 524
BshNI GGYRCC 5 cut(s) 103, 388, 475, 529, 577
BsiEI CGRYCG 1 cut(s) 183
BsiSI CCGG 3 cut(s) 467, 480, 521
BslI CCNNNNNNNGG 2 cut(s) 196, 197
BsmAI GTCTC 2 cut(s) 479, 533
BsnI GGCC 3 cut(s) 89, 235, 524
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 6 cut(s) 175, 191, 207, 210, 275, 317
BspANI GGCC 3 cut(s) 89, 235, 524
BspFNI CGCG 1 cut(s) 193
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 5 cut(s) 105, 390, 477, 531, 579
BspQI GCTCTTC 1 cut(s) 26
BspT107I GGYRCC 5 cut(s) 103, 388, 475, 529, 577
BsrFI RCCGGY 2 cut(s) 466, 520
BssAI RCCGGY 2 cut(s) 466, 520
BssECI CCNNGG 2 cut(s) 230, 525
BssMI GATC 1 cut(s) 180
BssNI GRCGYC 2 cut(s) 263, 305
Bst6I CTCTTC 3 cut(s) 26, 32, 345
BstACI GRCGYC 2 cut(s) 263, 305
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 1 cut(s) 43
BstF5I GGATG 2 cut(s) 174, 581
BstFNI CGCG 1 cut(s) 193
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 2 cut(s) 479, 533
BstMBI GATC 1 cut(s) 180
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 271, 313
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 478
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 283, 325
BsuRI GGCC 3 cut(s) 89, 235, 524
BtsCI GGATG 2 cut(s) 174, 581
Cac8I GCNNGC 1 cut(s) 468
CciI TCATGA 1 cut(s) 156
Cfr10I RCCGGY 2 cut(s) 466, 520
Cfr13I GGNCC 1 cut(s) 379
CseI GACGC 2 cut(s) 271, 313
Csp6I GTAC 1 cut(s) 389
CviAII CATG 2 cut(s) 121, 157
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eam1104I CTCTTC 3 cut(s) 26, 32, 345
EarI CTCTTC 3 cut(s) 26, 32, 345
EciI GGCGGA 2 cut(s) 164, 225
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 2 cut(s) 368, 414
EcoO109I RGGNCCY 1 cut(s) 379
FaeI CATG 2 cut(s) 124, 160
FaiI YATR 2 cut(s) 122, 158
FatI CATG 2 cut(s) 120, 156
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 5 cut(s) 208, 272, 275, 314, 317
FokI GGATG 2 cut(s) 181, 568
Fsp4HI GCNGC 5 cut(s) 208, 272, 275, 314, 317
GluI GCNGC 5 cut(s) 208, 272, 275, 314, 317
HaeIII GGCC 3 cut(s) 89, 235, 524
HapII CCGG 3 cut(s) 467, 480, 521
HgaI GACGC 2 cut(s) 271, 313
Hin1I GRCGYC 2 cut(s) 263, 305
Hin1II CATG 2 cut(s) 124, 160
HinfI GANTC 4 cut(s) 238, 244, 250, 404
HpaII CCGG 3 cut(s) 467, 480, 521
HphI GGTGA 2 cut(s) 438, 546
Hpy188I TCNGA 2 cut(s) 243, 249
Hpy188III TCNNGA 5 cut(s) 113, 157, 452, 506, 560
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 6 cut(s) 94, 207, 340, 392, 402, 420
HpyCH4IV ACGT 2 cut(s) 462, 570
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 2 cut(s) 271, 313
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 2 cut(s) 462, 570
Hsp92I GRCGYC 2 cut(s) 263, 305
Hsp92II CATG 2 cut(s) 124, 160
KpnI GGTACC 1 cut(s) 392
KroI GCCGGC 1 cut(s) 466
KroNI GCCGGC 1 cut(s) 468
Kzo9I GATC 1 cut(s) 180
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 3 cut(s) 445, 499, 553
Lsp1109I GCAGC 2 cut(s) 283, 325
MaeII ACGT 2 cut(s) 462, 570
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 4 cut(s) 13, 19, 362, 420
MluCI AATT 2 cut(s) 12, 71
MlyI GAGTC 1 cut(s) 398
MnlI CCTC 9 cut(s) 35, 225, 429, 454, 459, 513, 535, 562, 567
MroNI GCCGGC 1 cut(s) 466
MseI TTAA 1 cut(s) 589
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 3 cut(s) 467, 480, 521
MspR9I CCNGG 1 cut(s) 480
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 271, 313
NaeI GCCGGC 1 cut(s) 468
NciI CCSGG 1 cut(s) 480
NdeII GATC 1 cut(s) 180
NgoMIV GCCGGC 1 cut(s) 466
NlaIII CATG 2 cut(s) 124, 160
NlaIV GGNNCC 5 cut(s) 105, 390, 477, 531, 579
NmeAIII GCCGAG 2 cut(s) 255, 506
NspI RCATGY 1 cut(s) 124
PagI TCATGA 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 26
PdiI GCCGGC 1 cut(s) 468
PfeI GAWTC 3 cut(s) 238, 244, 250
PkrI GCNGC 5 cut(s) 209, 273, 276, 315, 318
Ple19I CGATCG 1 cut(s) 183
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PpuMI RGGWCCY 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 379
PspN4I GGNNCC 5 cut(s) 105, 390, 477, 531, 579
PspPI GGNCC 1 cut(s) 379
PspPPI RGGWCCY 1 cut(s) 379
PvuI CGATCG 1 cut(s) 183
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 589
SatI GCNGC 5 cut(s) 208, 272, 275, 314, 317
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 480
SinI GGWCC 1 cut(s) 379
SmlI CTYRAG 3 cut(s) 450, 504, 558
SmoI CTYRAG 3 cut(s) 450, 504, 558
Sse9I AATT 2 cut(s) 12, 71
SsiI CCGC 6 cut(s) 175, 191, 207, 210, 275, 317
StyD4I CCNGG 1 cut(s) 478
TaiI ACGT 2 cut(s) 465, 573
TasI AATT 2 cut(s) 12, 71
TauI GCSGC 3 cut(s) 210, 277, 319
TfiI GAWTC 3 cut(s) 238, 244, 250
Tru1I TTAA 1 cut(s) 589
Tru9I TTAA 1 cut(s) 589
TseI GCWGC 2 cut(s) 271, 313
TspDTI ATGAA 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 379
XapI RAATTY 2 cut(s) 12, 71
XceI RCATGY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.