Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002693

Physical Location & Seq

Genomic Coordinates Reverse (-)

77739463 .. 77751519

Gene Structure 12057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG602000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAATCGCATACCAATTGCTCTTTTCCTTGGGATCAAAATGAGATGGTTAAGCTTTTATGTGTTTGGTTACGGTGACGATAAATTTTTAAAAAATTGGCATGGGCTTCGCCCGTGTGTTAGGAAGGTGCCTGGGAGGAGTTACCCGCAAGTGGTGGAAAGTTTTTGTTACCCGACCAACCCTGAGGAGAACCTGGAGAAGCCAATACAACAGGGAGGTGTCATTGAAGATGTTCCCGTTATAATTTGTGACGAACCATCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

10.14

Weight (kDa)

6.55

Isoelectric Point (pI)

63.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g50220 FvH4_6g50240 FvH4_6g50250 FvH4_6g50900
rosa_chinensis	RchiOBHm_Chr2g0170461 RchiOBHm_Chr2g0170501 RchiOBHm_Chr2g0170511 RchiOBHm_Chr3g0464021
rosa_laevigata	RLG00000018108 RLG00000019049 RLG00000021959 RLG00000021962 RLG00000021963
rosa_multiflora	Rmu_sc0001705.1_g000024
rosa_roxburghii	Rroxscaffold_2G00081230 Rroxscaffold_2G00081250
rosa_rugosa	Rorug02G0549000 Rorug02G0549100 Rorug02G0549200 Rorug02G0549700 Rorug06G0139600
rosa_samantha	Rh2AG621100 Rh2AG621300 Rh2AG621400 Rh2BG632500 Rh2BG632800 Rh2BG639700 Rh2CG601800 Rh2CG602000 Rh2CG602100 Rh2DG645200 Rh2DG645600 Rh2DG650500 Rh3BG131200 Rh6BG254600 Rh6CG254200
rosa_wichuraiana	Rw2G051490 Rw2G051500 Rw2G051520 Rw2G052110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	127
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	130, 192
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
AlwI	GGATC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	86, 252
AxyI	CCTNAGG	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	127
BccI	CCATC	2 cut(s)	39, 265
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BciT130I	CCWGG	2 cut(s)	132, 194
Bme1390I	CCNGG	2 cut(s)	132, 194
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	132, 194
BpmI	CTGGAG	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	28, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse21I	CCTNAGG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	132, 194
BseDI	CCNNGG	2 cut(s)	28, 131
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	174
BseRI	GAGGAG	2 cut(s)	151, 200
BshNI	GGYRCC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	28, 131
BssMI	GATC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	2 cut(s)	132, 194
Bst4CI	ACNGT	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstNI	CCWGG	2 cut(s)	132, 194
BstSCI	CCNGG	2 cut(s)	130, 192
Bsu36I	CCTNAGG	1 cut(s)	183
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	3 cut(s)	54, 106, 202
CviKI_1	RGCY	3 cut(s)	54, 106, 202
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
DraI	TTTAAA	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	183
EcoRII	CCWGG	2 cut(s)	130, 192
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	1 cut(s)	104
FaiI	YATR	4 cut(s)	11, 60, 102, 242
FatI	CATG	1 cut(s)	100
FauI	CCCGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	215
Hin1II	CATG	1 cut(s)	104
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	2 cut(s)	86, 252
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	6 cut(s)	117, 144, 179, 195, 197, 206
MaeIII	GTNAC	5 cut(s)	68, 74, 140, 167, 248
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	1 cut(s)	239
MfeI	CAATTG	1 cut(s)	15
MluCI	AATT	4 cut(s)	15, 83, 94, 243
MnlI	CCTC	3 cut(s)	129, 178, 209
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	3 cut(s)	50, 89, 265
MspR9I	CCNGG	2 cut(s)	132, 194
MunI	CAATTG	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	132, 194
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	2 cut(s)	74, 248
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	4
PsiI	TTATAA	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	130, 192
PspGI	CCWGG	2 cut(s)	130, 192
PspN4I	GGNNCC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	50, 89, 265
Sau3AI	GATC	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	132, 194
SetI	ASST	5 cut(s)	56, 129, 195, 220, 265
Sse9I	AATT	4 cut(s)	15, 83, 94, 243
SsiI	CCGC	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	130, 192
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	74
TasI	AATT	4 cut(s)	15, 83, 94, 243
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	50, 89, 265
Tru9I	TTAA	3 cut(s)	50, 89, 265
TseFI	GTSAC	2 cut(s)	74, 248
Tsp45I	GTSAC	2 cut(s)	74, 248
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.