Rroxscaffold_2G00081230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002693
Physical Location & Seq
Forward (+)
4202072 .. 4203597
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081230.1

Sequence Viewer

Length: 297 bp
ATGGCCTTTAGAACTTTGCTTTTTTTGTTCTTCGCCATTCTCTTAGTTACTACAATGGTTTCAGCTGAGGAATTGGAAGACGAAAAGGCCGAGAAGCCAAAGGTTTACGGTGACGAGAAATTTTTCAAAAATTGGCGTGGTGTTCACCCTTGTGTTAGGAGCAGGGTGCCTGGGAAGCCTTACTCGGCAGTAATGGGATATCATTGTGATGACTCGAGTCACTCGACCAACCCTGAGTTTCAAGGAGGTGTTATTGAAGGCGTCTCCGATATAATTCATGACGAACCATCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.03

Weight (kDa)

5.24

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 261
AgsI TTSAA 3 cut(s) 127, 242, 257
AjnI CCWGG 1 cut(s) 169
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 2 cut(s) 3, 87
ApoI RAATTY 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 122
AsuHPI GGTGA 3 cut(s) 122, 137, 282
AvaI CYCGRG 1 cut(s) 214
BanI GGYRCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 171
BoxI GACNNNNGTC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 170
BseMII CTCAG 2 cut(s) 57, 225
BshFI GGCC 2 cut(s) 5, 89
BshNI GGYRCC 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 268
BsmBI CGTCTC 1 cut(s) 268
BsnI GGCC 2 cut(s) 5, 89
BsoBI CYCGRG 1 cut(s) 214
BspANI GGCC 2 cut(s) 5, 89
BspCNI CTCAG 2 cut(s) 58, 226
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 170
BssNI GRCGYC 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 261
BstDEI CTNAG 3 cut(s) 43, 66, 234
BstMAI GTCTC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 171
BstPAI GACNNNNGTC 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 2 cut(s) 5, 89
CciI TCATGA 1 cut(s) 277
CseI GACGC 1 cut(s) 250
CviAII CATG 1 cut(s) 278
CviJI RGCY 5 cut(s) 5, 65, 89, 97, 178
CviKI_1 RGCY 5 cut(s) 5, 65, 89, 97, 178
DdeI CTNAG 3 cut(s) 43, 66, 234
Eco32I GATATC 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 169
EcoRV GATATC 1 cut(s) 200
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 1 cut(s) 281
FaiI YATR 2 cut(s) 272, 279
FatI CATG 1 cut(s) 277
HaeIII GGCC 2 cut(s) 5, 89
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 1 cut(s) 281
HinfI GANTC 2 cut(s) 212, 217
HphI GGTGA 3 cut(s) 122, 137, 282
Hpy166II GTNNAC 2 cut(s) 106, 145
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 2 cut(s) 106, 145
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 3 cut(s) 43, 66, 234
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 1 cut(s) 281
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 4 cut(s) 148, 156, 183, 246
MaeIII GTNAC 3 cut(s) 46, 110, 218
MboII GAAGA 2 cut(s) 22, 89
MluCI AATT 4 cut(s) 71, 119, 130, 273
MlyI GAGTC 2 cut(s) 206, 226
MnlI CCTC 2 cut(s) 61, 239
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 1 cut(s) 295
MslI CAYNNNNRTG 2 cut(s) 150, 207
MspA1I CMGCKG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 175
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 1 cut(s) 168
NmeAIII GCCGAG 2 cut(s) 115, 164
NmuCI GTSAC 2 cut(s) 110, 218
OliI CACNNNNGTG 1 cut(s) 150
PaeR7I CTCGAG 1 cut(s) 214
PagI TCATGA 1 cut(s) 277
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 221
PdmI GAANNNNTTC 1 cut(s) 122
PleI GAGTC 2 cut(s) 206, 225
PpsI GAGTC 2 cut(s) 206, 225
PshAI GACNNNNGTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 168
PspXI VCTCGAGB 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 65
RseI CAYNNNNRTG 2 cut(s) 150, 207
SaqAI TTAA 1 cut(s) 295
SchI GAGTC 2 cut(s) 206, 226
ScrFI CCNGG 1 cut(s) 171
SetI ASST 4 cut(s) 67, 105, 250, 295
Sfr274I CTCGAG 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 150, 207
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 4 cut(s) 71, 119, 130, 273
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 215, 224
TasI AATT 4 cut(s) 71, 119, 130, 273
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TseFI GTSAC 2 cut(s) 110, 218
Tsp45I GTSAC 2 cut(s) 110, 218
TspDTI ATGAA 1 cut(s) 266
XapI RAATTY 1 cut(s) 119
XhoI CTCGAG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.