Rh6BG254600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002693
Physical Location & Seq
Forward (+)
46726488 .. 46731002
4515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG254600.1

Sequence Viewer

Length: 387 bp
ATGCGACAGAGTACAAAAATGGTCTTCAGAACTGTGCTCTTCTTCTTCTTCGCCATTCTCTTAGTTACTACAAGGGTTTCAGCTGATGAGTTTGAGAACGAAAAGGCCAAGAAGCCGAAGACACCAACTCCCAGCGACTTACACACTCCACCACTTCCCGTAGATAAGGTTTACGGTGACCAGAAACAACTAGGGTCATTGATCAATTGGTTGAGGCAAGCGGCCATGCAAGCGGCCAAACAAGAAGCCAAAGAAGCGGCCAAAGAGGCAGGCAAAGAAGTGGGGGTATGGATTTACGTAGTATTGAATTCTCTTTATCATAAGGATATGCTAGTAACTGATGCAGTAATAAATAAGCTAAGAGCATCTCAAACAGTTTCCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.42

Weight (kDa)

9.52

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 221, 233, 257
AcoI YGGCCR 3 cut(s) 222, 234, 258
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 10
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 1 cut(s) 307
AluBI AGCT 2 cut(s) 83, 358
AluI AGCT 2 cut(s) 83, 358
Alw21I GWGCWC 1 cut(s) 39
AoxI GGCC 4 cut(s) 105, 222, 234, 258
ApoI RAATTY 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 188
BbsI GAAGAC 2 cut(s) 16, 125
Bbv12I GWGCWC 1 cut(s) 39
BclI TGATCA 1 cut(s) 201
BfaI CTAG 2 cut(s) 191, 332
BglI GCCNNNNNGGC 1 cut(s) 266
BisI GCNGC 3 cut(s) 222, 234, 258
BlsI GCNGC 3 cut(s) 223, 235, 259
BmsI GCATC 2 cut(s) 331, 374
BpiI GAAGAC 2 cut(s) 16, 125
BsaAI YACGTR 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 4 cut(s) 107, 224, 236, 260
BsiHKAI GWGCWC 1 cut(s) 39
BsnI GGCC 4 cut(s) 107, 224, 236, 260
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 3 cut(s) 221, 233, 257
BspANI GGCC 4 cut(s) 107, 224, 236, 260
BspQI GCTCTTC 1 cut(s) 44
BssMI GATC 1 cut(s) 201
Bst4CI ACNGT 3 cut(s) 34, 176, 376
Bst6I CTCTTC 1 cut(s) 44
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 219, 231, 271
BstDEI CTNAG 2 cut(s) 61, 359
BstEII GGTNACC 1 cut(s) 176
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 3 cut(s) 230, 254, 266
BstPI GGTNACC 1 cut(s) 176
BstSNI TACGTA 1 cut(s) 298
BstV2I GAAGAC 2 cut(s) 16, 125
BsuRI GGCC 4 cut(s) 107, 224, 236, 260
Cac8I GCNNGC 3 cut(s) 219, 231, 271
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 226
CviJI RGCY 8 cut(s) 83, 107, 115, 224, 236, 248, 260, 358
CviKI_1 RGCY 8 cut(s) 83, 107, 115, 224, 236, 248, 260, 358
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 61, 359
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
EaeI YGGCCR 3 cut(s) 222, 234, 258
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco105I TACGTA 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 10
Eco91I GGTNACC 1 cut(s) 176
EcoO65I GGTNACC 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 307
FaeI CATG 1 cut(s) 229
FaiI YATR 5 cut(s) 227, 289, 321, 329, 385
FatI CATG 1 cut(s) 225
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 222, 234, 258
Fsp4HI GCNGC 3 cut(s) 222, 234, 258
FspBI CTAG 2 cut(s) 191, 332
GluI GCNGC 3 cut(s) 222, 234, 258
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 4 cut(s) 107, 224, 236, 260
Hin1II CATG 1 cut(s) 229
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4III ACNGT 3 cut(s) 34, 176, 376
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 229, 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 254, 266
HpyF3I CTNAG 2 cut(s) 61, 359
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 1 cut(s) 201
LguI GCTCTTC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 145, 194, 255
LweI GCATC 2 cut(s) 331, 374
MaeI CTAG 2 cut(s) 191, 332
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 64, 176, 334
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 6 cut(s) 16, 31, 34, 37, 40, 130
MfeI CAATTG 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 2 cut(s) 205, 307
MnlI CCTC 2 cut(s) 207, 259
MspA1I CMGCKG 1 cut(s) 83
MunI CAATTG 1 cut(s) 205
MwoI GCNNNNNNNGC 3 cut(s) 230, 254, 266
NdeII GATC 1 cut(s) 201
NlaIII CATG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 223, 235, 259
Ppu21I YACGTR 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SapI GCTCTTC 1 cut(s) 44
SatI GCNGC 3 cut(s) 222, 234, 258
Sau3AI GATC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 39
SetI ASST 4 cut(s) 85, 171, 300, 360
SfaNI GCATC 2 cut(s) 331, 374
SnaBI TACGTA 1 cut(s) 298
Sse9I AATT 2 cut(s) 205, 307
SsiI CCGC 3 cut(s) 221, 233, 257
SspMI CTAG 2 cut(s) 191, 332
TaaI ACNGT 3 cut(s) 34, 176, 376
TaiI ACGT 1 cut(s) 300
TasI AATT 2 cut(s) 205, 307
TatI WGTACW 1 cut(s) 11
TauI GCSGC 3 cut(s) 224, 236, 260
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
XapI RAATTY 1 cut(s) 307
XspI CTAG 2 cut(s) 191, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.