Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002693

Physical Location & Seq

Genomic Coordinates Forward (+)

25393763 .. 25399012

Gene Structure 5250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018108

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTGTTCAGAACTTTGCTCTTCCTCTTATTTGCCATTCTTTTAGTTACTACAAAGGCTTCAGCCGATGAGTTTGAGAATGAAAAGGCAAAGAAGTCGAAGGTTTACGATGATGAGAAATCTTGGGTGAGCTTGATTCGCCCCATAGGGGGGTTCAAGCAGGCGGGTAGCCGAATCGGGGAAAATTGTGTTGCATTGACAATAAGTGAACACTCGAACTCCGGCTGCTGCTCCAGCATTAATCTAGTTCGTCTCCGACTCGGAAGCAAACGCCGCAACTGGAGCTTCTTCGTCGTATGCAATCGACGTCGTCTTCCGCCCATGAAGGATCCGCCACTTGGATCTGTTGTCGTGGGTGATCATGTCAATGTATCACTTGCCGTATTTTTTCGATTGCCGGAAGTTCCTGAAGGCACACATTTGCAGCTGTCACAACATGTCAAAAAACAACCGGCTGAGAAAGGTGAAGAGGATATTATGGTCCCGGACACCACCTCCATGGACACCACAACCACCACCGCTTCCAAAGTTCAAAGCTCCCACCTCTCCGGTTTAAGGACTATTGTCTCCATCTTCACAACGGCCACCACTTCCTCCTTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.17

Weight (kDa)

9.3

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g50220 FvH4_6g50240 FvH4_6g50250 FvH4_6g50900
rosa_chinensis	RchiOBHm_Chr2g0170461 RchiOBHm_Chr2g0170501 RchiOBHm_Chr2g0170511 RchiOBHm_Chr3g0464021
rosa_laevigata	RLG00000018108 RLG00000019049 RLG00000021959 RLG00000021962 RLG00000021963
rosa_multiflora	Rmu_sc0001705.1_g000024
rosa_roxburghii	Rroxscaffold_2G00081230 Rroxscaffold_2G00081250
rosa_rugosa	Rorug02G0549000 Rorug02G0549100 Rorug02G0549200 Rorug02G0549700 Rorug06G0139600
rosa_samantha	Rh2AG621100 Rh2AG621300 Rh2AG621400 Rh2BG632500 Rh2BG632800 Rh2BG639700 Rh2CG601800 Rh2CG602000 Rh2CG602100 Rh2DG645200 Rh2DG645600 Rh2DG650500 Rh3BG131200 Rh6BG254600 Rh6CG254200
rosa_wichuraiana	Rw2G051490 Rw2G051500 Rw2G051520 Rw2G052110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	310
AciI	CCGC	5 cut(s)	164, 274, 317, 332, 519
AclWI	GGATC	3 cut(s)	323, 336, 349
AcoI	YGGCCR	1 cut(s)	582
AcuI	CTGAAG	2 cut(s)	45, 429
AcyI	GRCGYC	1 cut(s)	307
AfiI	CCNNNNNNNGG	6 cut(s)	148, 149, 150, 178, 338, 555
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	157, 533
AluBI	AGCT	4 cut(s)	132, 285, 427, 537
AluI	AGCT	4 cut(s)	132, 285, 427, 537
Alw26I	GTCTC	2 cut(s)	257, 571
AlwI	GGATC	3 cut(s)	323, 336, 349
AoxI	GGCC	1 cut(s)	582
ApeKI	GCWGC	3 cut(s)	225, 228, 424
AseI	ATTAAT	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	481
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	3 cut(s)	139, 368, 476
AvaII	GGWCC	1 cut(s)	481
BamHI	GGATCC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	212, 215, 436
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	2 cut(s)	365, 597
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	2 cut(s)	257, 571
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	4 cut(s)	226, 229, 274, 425
BlsI	GCNGC	4 cut(s)	227, 230, 275, 426
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	2 cut(s)	330, 483
BmrFI	CCNGG	1 cut(s)	485
BoxI	GACNNNNGTC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	2 cut(s)	217, 301
BpuMI	CCSGG	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	498
BsaWI	WCCGGW	1 cut(s)	548
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 479, 509
Bsc4I	CCNNNNNNNGG	6 cut(s)	148, 149, 150, 178, 338, 555
Bse118I	RCCGGY	1 cut(s)	451
Bse1I	ACTGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	498
BseLI	CCNNNNNNNGG	6 cut(s)	148, 149, 150, 178, 338, 555
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	284
BseXI	GCAGC	3 cut(s)	212, 215, 436
BshFI	GGCC	1 cut(s)	584
BsiSI	CCGG	5 cut(s)	222, 398, 452, 485, 549
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	6 cut(s)	148, 149, 150, 178, 338, 555
BsmAI	GTCTC	2 cut(s)	257, 571
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	584
Bsp143I	GATC	3 cut(s)	328, 341, 358
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	5 cut(s)	164, 274, 317, 332, 519
BspANI	GGCC	1 cut(s)	584
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	330, 483
BspPI	GGATC	3 cut(s)	323, 336, 349
BspQI	GCTCTTC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	3 cut(s)	328, 341, 358
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	498
Bst6I	CTCTTC	2 cut(s)	26, 462
BstACI	GRCGYC	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	456
BstDSI	CCRYGG	1 cut(s)	498
BstKTI	GATC	3 cut(s)	331, 344, 361
BstMAI	GTCTC	2 cut(s)	257, 571
BstMBI	GATC	3 cut(s)	328, 341, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 234, 273, 282
BstNSI	RCATGY	1 cut(s)	440
BstPAI	GACNNNNGTC	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	212, 215, 436
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	328, 341
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	2 cut(s)	328, 341
BsuRI	GGCC	1 cut(s)	584
BtgI	CCRYGG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	481
CviAII	CATG	4 cut(s)	322, 362, 437, 499
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	3 cut(s)	330, 343, 360
DpnII	GATC	3 cut(s)	328, 341, 358
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	2 cut(s)	26, 462
EarI	CTCTTC	2 cut(s)	26, 462
EciI	GGCGGA	2 cut(s)	306, 321
Eco130I	CCWWGG	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	45, 429
EcoT14I	CCWWGG	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	4 cut(s)	325, 365, 440, 502
FaiI	YATR	8 cut(s)	146, 298, 323, 363, 438, 479, 500, 604
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	4 cut(s)	321, 361, 436, 498
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	4 cut(s)	226, 229, 274, 425
Fsp4HI	GCNGC	4 cut(s)	226, 229, 274, 425
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	4 cut(s)	226, 229, 274, 425
GsuI	CTGGAG	2 cut(s)	217, 301
HaeIII	GGCC	1 cut(s)	584
HapII	CCGG	5 cut(s)	222, 398, 452, 485, 549
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	4 cut(s)	325, 365, 440, 502
HinfI	GANTC	3 cut(s)	136, 174, 258
HpaII	CCGG	5 cut(s)	222, 398, 452, 485, 549
HphI	GGTGA	3 cut(s)	139, 368, 476
Hpy166II	GTNNAC	2 cut(s)	106, 209
Hpy188I	TCNGA	3 cut(s)	11, 257, 263
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	2 cut(s)	106, 209
Hpy99I	CGWCG	3 cut(s)	296, 309, 312
HpyAV	CCTTC	3 cut(s)	94, 319, 404
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	4 cut(s)	194, 300, 424, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 234, 273, 282
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	1 cut(s)	307
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	4 cut(s)	325, 365, 440, 502
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	328, 341, 358
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	3 cut(s)	236, 282, 542
LpnPI	CCDG	9 cut(s)	146, 235, 247, 265, 411, 420, 465, 498, 562
Lsp1109I	GCAGC	3 cut(s)	212, 215, 436
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	46, 429
MalI	GATC	3 cut(s)	330, 343, 360
MboI	GATC	3 cut(s)	328, 341, 358
MboII	GAAGA	5 cut(s)	13, 280, 305, 479, 565
MflI	RGATCY	2 cut(s)	328, 341
MluCI	AATT	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	5 cut(s)	35, 463, 505, 554, 604
MseI	TTAA	2 cut(s)	240, 554
MslI	CAYNNNNRTG	2 cut(s)	366, 497
MspA1I	CMGCKG	1 cut(s)	427
MspI	CCGG	5 cut(s)	222, 398, 452, 485, 549
MspR9I	CCNGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	4 cut(s)	138, 234, 273, 282
NciI	CCSGG	1 cut(s)	485
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	3 cut(s)	328, 341, 358
NlaIII	CATG	4 cut(s)	325, 365, 440, 502
NlaIV	GGNNCC	2 cut(s)	330, 483
NmuCI	GTSAC	1 cut(s)	429
NspI	RCATGY	1 cut(s)	440
PciI	ACATGT	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	136, 174
PflFI	GACNNNGTC	1 cut(s)	309
PfoI	TCCNGGA	1 cut(s)	483
PkrI	GCNGC	4 cut(s)	227, 230, 275, 426
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PscI	ACATGT	1 cut(s)	436
PshAI	GACNNNNGTC	1 cut(s)	563
PshBI	ATTAAT	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	330, 483
PspPI	GGNCC	1 cut(s)	481
PsuI	RGATCY	2 cut(s)	328, 341
PsyI	GACNNNGTC	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	366, 497
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	240, 554
SatI	GCNGC	4 cut(s)	226, 229, 274, 425
Sau3AI	GATC	3 cut(s)	328, 341, 358
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	485
SetI	ASST	9 cut(s)	105, 134, 287, 310, 429, 466, 497, 539, 546
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	2 cut(s)	366, 497
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	5 cut(s)	164, 274, 317, 332, 519
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	498
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	4 cut(s)	98, 215, 304, 391
TasI	AATT	1 cut(s)	184
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	136, 174
Tru1I	TTAA	2 cut(s)	240, 554
Tru9I	TTAA	2 cut(s)	240, 554
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	3 cut(s)	225, 228, 424
Tsp45I	GTSAC	1 cut(s)	429
TspDTI	ATGAA	2 cut(s)	96, 338
Tth111I	GACNNNGTC	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	481
VspI	ATTAAT	1 cut(s)	240
XceI	RCATGY	1 cut(s)	440
XspI	CTAG	1 cut(s)	245
ZraI	GACGTC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.