Rh2CG602100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002693
Physical Location & Seq
Reverse (-)
77757490 .. 77759712
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG602100.1

Sequence Viewer

Length: 300 bp
ATGGAGTTTCGGGACGTTTACCTCTTGGAGGCCACGAGGCATCAACAACCAACTTCATCACCAGGAAATATCATCTTATTCAAACACGAATCGCATACCAATTGCGCGTTTTCTTGGGGTCAAAATGAGATGGTTCACGATGACGGGAAATCACATTTCAAAGATTGGCATGAATCATCGGATGATGCTGGCTCGTTTGTTGGGAATGGGCTTGGGAGGAAGTACATGTACCACTCGAATTATGAGGAAGGTGCCAGCGAAGGCGTCTCCGATATATTTCATGACGAACCATTATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.28

Weight (kDa)

5.01

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccII CGCG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 2 cut(s) 224, 230
AfiI CCNNNNNNNGG 1 cut(s) 28
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 2 cut(s) 82, 160
AjnI CCWGG 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 271
AoxI GGCC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 51
BanI GGYRCC 1 cut(s) 251
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
BauI CACGAG 1 cut(s) 34
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 2 cut(s) 49, 175
BsaHI GRCGYC 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 1 cut(s) 32
BshNI GGYRCC 1 cut(s) 251
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 271
BsmBI CGTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 32
BspANI GGCC 1 cut(s) 32
BspFNI CGCG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 251
BssNI GRCGYC 1 cut(s) 264
BssSI CACGAG 1 cut(s) 34
Bst2BI CACGAG 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 190, 256
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 107
BstMAI GTCTC 1 cut(s) 271
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 61
BstUI CGCG 1 cut(s) 107
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 190, 256
CciI TCATGA 1 cut(s) 280
CfoI GCGC 1 cut(s) 107
CseI GACGC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 223, 229
CviAII CATG 3 cut(s) 170, 226, 281
CviJI RGCY 3 cut(s) 32, 192, 211
CviKI_1 RGCY 3 cut(s) 32, 192, 211
CviQI GTAC 2 cut(s) 223, 229
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 61
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 3 cut(s) 173, 229, 284
FaiI YATR 6 cut(s) 96, 171, 227, 243, 275, 282
FaqI GGGAC 1 cut(s) 26
FatI CATG 3 cut(s) 169, 225, 280
FokI GGATG 1 cut(s) 194
GlaI GCGC 1 cut(s) 106
HaeIII GGCC 1 cut(s) 32
HgaI GACGC 1 cut(s) 253
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 3 cut(s) 173, 229, 284
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 2 cut(s) 89, 173
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 2 cut(s) 19, 136
Hpy188I TCNGA 2 cut(s) 181, 271
Hpy188III TCNNGA 3 cut(s) 11, 137, 281
Hpy8I GTNNAC 2 cut(s) 19, 136
HpyAV CCTTC 2 cut(s) 242, 254
HpyCH4IV ACGT 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 3 cut(s) 173, 229, 284
HspAI GCGC 1 cut(s) 105
LpnPI CCDG 4 cut(s) 48, 75, 174, 268
LweI GCATC 2 cut(s) 49, 175
MaeII ACGT 1 cut(s) 15
MfeI CAATTG 1 cut(s) 100
MluCI AATT 2 cut(s) 100, 238
MnlI CCTC 5 cut(s) 22, 30, 32, 210, 238
MseI TTAA 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 1 cut(s) 107
NlaIII CATG 3 cut(s) 173, 229, 284
NlaIV GGNNCC 1 cut(s) 253
NspI RCATGY 1 cut(s) 229
PagI TCATGA 1 cut(s) 280
PciI ACATGT 1 cut(s) 225
PfeI GAWTC 2 cut(s) 89, 173
PscI ACATGT 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 253
RsaI GTAC 2 cut(s) 224, 230
RsaNI GTAC 2 cut(s) 223, 229
SaqAI TTAA 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 63
SetI ASST 3 cut(s) 18, 24, 253
SfaNI GCATC 2 cut(s) 49, 175
Sse9I AATT 2 cut(s) 100, 238
StyD4I CCNGG 1 cut(s) 61
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 100, 238
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 2 cut(s) 89, 173
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 45, 186, 269
XagI CCTNNNNNAGG 1 cut(s) 26
XceI RCATGY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.