Rmu_sc0001705.1_g000024

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001705.1
OG0002693
Physical Location & Seq
Forward (+)
76844 .. 80603
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001705.1_g000024.1.cds

Sequence Viewer

Length: 525 bp
atggtcttcagaactgtgctcttcttcttcttcttcgccattctcttagttactacaagggtttcagctgatgagtttgagaacgaaaatgccaagaagccgaagacaccaactcccagcgacttacacactccaccacttcccgtagataaggtttacggtgaccagaaacaactagggtcattgatcaattggttgaggcaagcggccatgcaagcggccaaagaagcggccaaacaagaagccaaagaagcggccaaagaggcaagcaaagaagtggggaaagatgtaatggacaccatcagcggcggtgacgctcacaacgtcgatgcagcaggctgcttccaggcgtcaaatgcagcgcggggcttgcaagagggaggccggaggcttcccagaccgttctgggcaccgtttgaggtcgggcttgccggtttctgggcagccacctcacctgcaactgcaggttttgtgcagcactacaaaactagtcgccggcgaccccacccgaccgcagacccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.02

Weight (kDa)

9.07

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 463
Acc36I ACCTGC 2 cut(s) 455, 463
AccB1I GGYRCC 1 cut(s) 409
AccII CGCG 1 cut(s) 364
AciI CCGC 8 cut(s) 206, 218, 230, 254, 306, 309, 364, 513
AcoI YGGCCR 4 cut(s) 207, 219, 231, 255
AcyI GRCGYC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 438
AhlI ACTAGT 1 cut(s) 488
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 21
AoxI GGCC 5 cut(s) 207, 219, 231, 255, 382
ApeKI GCWGC 5 cut(s) 332, 339, 359, 443, 475
AspLEI GCGC 1 cut(s) 364
AsuHPI GGTGA 3 cut(s) 173, 323, 444
BaeGI GKGCMC 1 cut(s) 412
BanI GGYRCC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 5 cut(s) 326, 344, 371, 455, 487
BccI CCATC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 347
BclI TGATCA 1 cut(s) 186
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 2 cut(s) 176, 489
BfmI CTRYAG 1 cut(s) 462
BfuAI ACCTGC 2 cut(s) 455, 463
BglI GCCNNNNNGGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 411
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse118I RCCGGY 2 cut(s) 431, 495
BseBI CCWGG 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 438
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 5 cut(s) 326, 344, 371, 455, 487
BseYI CCCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 364
Bsh1285I CGRYCG 1 cut(s) 513
BshFI GGCC 5 cut(s) 209, 221, 233, 257, 384
BshNI GGYRCC 1 cut(s) 409
BsiEI CGRYCG 1 cut(s) 513
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 3 cut(s) 385, 432, 496
BslI CCNNNNNNNGG 1 cut(s) 438
BsnI GGCC 5 cut(s) 209, 221, 233, 257, 384
Bsp1286I GDGCHC 2 cut(s) 21, 412
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 8 cut(s) 206, 218, 230, 254, 306, 309, 364, 513
BspANI GGCC 5 cut(s) 209, 221, 233, 257, 384
BspFNI CGCG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 411
BspMAI CTGCAG 1 cut(s) 466
BspMI ACCTGC 2 cut(s) 455, 463
BspQI GCTCTTC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 409
BsrFI RCCGGY 2 cut(s) 431, 495
BssAI RCCGGY 2 cut(s) 431, 495
BssMI GATC 1 cut(s) 186
BssNI GRCGYC 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 4 cut(s) 16, 161, 402, 414
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 350
BstC8I GCNNGC 7 cut(s) 204, 216, 268, 337, 371, 429, 497
BstDEI CTNAG 1 cut(s) 46
BstEII GGTNACC 1 cut(s) 161
BstFNI CGCG 1 cut(s) 364
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMCI CGRYCG 1 cut(s) 513
BstMWI GCNNNNNNNGC 6 cut(s) 215, 227, 251, 263, 356, 370
BstNI CCWGG 1 cut(s) 347
BstPI GGTNACC 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 412
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 5 cut(s) 326, 344, 371, 455, 487
BstV2I GAAGAC 1 cut(s) 110
BsuRI GGCC 5 cut(s) 209, 221, 233, 257, 384
BveI ACCTGC 2 cut(s) 455, 463
Cac8I GCNNGC 7 cut(s) 204, 216, 268, 337, 371, 429, 497
CfoI GCGC 1 cut(s) 364
Cfr10I RCCGGY 2 cut(s) 431, 495
CseI GACGC 2 cut(s) 323, 339
CviAII CATG 1 cut(s) 211
DdeI CTNAG 1 cut(s) 46
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
EaeI YGGCCR 4 cut(s) 207, 219, 231, 255
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco91I GGTNACC 1 cut(s) 161
EcoO65I GGTNACC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 345
FaeI CATG 1 cut(s) 214
FaiI YATR 1 cut(s) 212
FatI CATG 1 cut(s) 210
FauI CCCGC 1 cut(s) 357
FbaI TGATCA 1 cut(s) 186
FspBI CTAG 2 cut(s) 176, 489
GlaI GCGC 1 cut(s) 363
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 5 cut(s) 209, 221, 233, 257, 384
HapII CCGG 3 cut(s) 385, 432, 496
HgaI GACGC 2 cut(s) 323, 339
HhaI GCGC 1 cut(s) 364
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HpaII CCGG 3 cut(s) 385, 432, 496
HphI GGTGA 3 cut(s) 173, 323, 444
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 329
HpyCH4III ACNGT 4 cut(s) 16, 161, 402, 414
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 7 cut(s) 214, 332, 359, 373, 458, 464, 475
HpyF10VI GCNNNNNNNGC 6 cut(s) 215, 227, 251, 263, 356, 370
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 324
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 362
KroI GCCGGC 1 cut(s) 495
KroNI GCCGGC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 1 cut(s) 186
LguI GCTCTTC 1 cut(s) 26
Lsp1109I GCAGC 5 cut(s) 326, 344, 371, 455, 487
LweI GCATC 1 cut(s) 319
MaeI CTAG 2 cut(s) 176, 489
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 3 cut(s) 49, 161, 311
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 6 cut(s) 13, 16, 19, 22, 25, 115
MfeI CAATTG 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 21, 412
MluCI AATT 1 cut(s) 190
MnlI CCTC 7 cut(s) 192, 256, 370, 374, 381, 412, 460
MreI CGCCGGCG 1 cut(s) 495
MroNI GCCGGC 1 cut(s) 495
MspA1I CMGCKG 2 cut(s) 68, 306
MspI CCGG 3 cut(s) 385, 432, 496
MspR9I CCNGG 1 cut(s) 347
MunI CAATTG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 6 cut(s) 215, 227, 251, 263, 356, 370
NaeI GCCGGC 1 cut(s) 497
NdeII GATC 1 cut(s) 186
NgoMIV GCCGGC 1 cut(s) 495
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 411
NmuCI GTSAC 2 cut(s) 161, 311
PaqCI CACCTGC 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PdiI GCCGGC 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 345
PspEI GGTNACC 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 411
PstI CTGCAG 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 68
SapI GCTCTTC 1 cut(s) 26
Sau3AI GATC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 2 cut(s) 21, 412
SetI ASST 7 cut(s) 70, 156, 327, 423, 452, 457, 469
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 462
SgrAI CRCCGGYG 1 cut(s) 495
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 1 cut(s) 190
SsiI CCGC 8 cut(s) 206, 218, 230, 254, 306, 309, 364, 513
SspMI CTAG 2 cut(s) 176, 489
StyD4I CCNGG 1 cut(s) 345
TaaI ACNGT 4 cut(s) 16, 161, 402, 414
TaiI ACGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 327
TasI AATT 1 cut(s) 190
TauI GCSGC 5 cut(s) 209, 221, 233, 257, 309
TseFI GTSAC 2 cut(s) 161, 311
TseI GCWGC 5 cut(s) 332, 339, 359, 443, 475
Tsp45I GTSAC 2 cut(s) 161, 311
XspI CTAG 2 cut(s) 176, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.