FvH4_6g50900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002693
Physical Location & Seq
Forward (+)
37813872 .. 37815131
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50900.t1

Sequence Viewer

Length: 495 bp
ATGGTCCTCAAAACAGTCATCTTCCTCTTCTTCACCATTCTCTTAGTTACTACAAAGGTTTCAACTCGTGAGTTTGAGAATGAAGATGTAAAGGAGCTGAAGACATCAACTCCCAGCGATGTGCAAACTCCACCCCTTCCAGTAAACAAGGTTTATGATGACGAGAAGGAGAGTAGCTTTGATCGTTTTTTTAAATGGATTACTGACCATATTTTGCCCAAGCCAAAGCCGGAGACGCCAGTGAATCCAACGCCAAATCTGCCACAAAATCCGATGCCGACGTTGTCGCCACCTTTAAACACTGCACCACCACCACTAGAGAACGATGATGAAGACGACGGTGATCAGACACCATCTTCCCCATCTCAAGATAAATTACCGACGGTTACATCTCCTATTGTGAACAAGCAACTATTTCTTGGTCATGGAATTGGTGGTAAATATGGTCGTGGATTTGGTGATTGTAAGACGGGGCCATGCAGAAACCGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.23

Weight (kDa)

5.19

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 236
AgsI TTSAA 1 cut(s) 63
AluBI AGCT 2 cut(s) 97, 177
AluI AGCT 2 cut(s) 97, 177
Alw26I GTCTC 1 cut(s) 227
AoxI GGCC 1 cut(s) 473
AspS9I GGNCC 2 cut(s) 4, 473
AsuHPI GGTGA 3 cut(s) 25, 353, 470
AvaII GGWCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 66
BbsI GAAGAC 2 cut(s) 107, 339
BccI CCATC 2 cut(s) 361, 370
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 473
BmiI GGNNCC 1 cut(s) 474
BmsI GCATC 1 cut(s) 264
BpiI GAAGAC 2 cut(s) 107, 339
BpuEI CTTGAG 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bse1I ACTGG 2 cut(s) 140, 239
BseNI ACTGG 2 cut(s) 140, 239
BseYI CCCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 475
BsiSI CCGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 227
BsmBI CGTCTC 1 cut(s) 227
BsnI GGCC 1 cut(s) 475
Bsp143I GATC 2 cut(s) 181, 343
BspANI GGCC 1 cut(s) 475
BspLI GGNNCC 1 cut(s) 474
BsrI ACTGG 2 cut(s) 140, 239
BssMI GATC 2 cut(s) 181, 343
BssNI GRCGYC 1 cut(s) 236
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst4CI ACNGT 4 cut(s) 16, 341, 385, 488
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 43
BstKTI GATC 2 cut(s) 184, 346
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 181, 343
BstMWI GCNNNNNNNGC 2 cut(s) 235, 259
BstV2I GAAGAC 2 cut(s) 107, 339
BsuRI GGCC 1 cut(s) 475
BtgZI GCGATG 1 cut(s) 132
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 246, 300
Cfr13I GGNCC 2 cut(s) 4, 473
CseI GACGC 1 cut(s) 244
CviAII CATG 2 cut(s) 425, 477
CviJI RGCY 5 cut(s) 97, 177, 223, 229, 475
CviKI_1 RGCY 5 cut(s) 97, 177, 223, 229, 475
DdeI CTNAG 1 cut(s) 43
DpnI GATC 2 cut(s) 183, 345
DpnII GATC 2 cut(s) 181, 343
DraI TTTAAA 2 cut(s) 193, 297
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 119
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 2 cut(s) 428, 480
FaiI YATR 6 cut(s) 156, 210, 426, 444, 478, 493
FatI CATG 2 cut(s) 424, 476
FbaI TGATCA 1 cut(s) 343
FspBI CTAG 1 cut(s) 317
GsaI CCCAGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 475
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 236
Hin1II CATG 2 cut(s) 428, 480
HinfI GANTC 1 cut(s) 244
HpaII CCGG 1 cut(s) 230
HphI GGTGA 3 cut(s) 25, 353, 470
Hpy166II GTNNAC 2 cut(s) 145, 403
Hpy188I TCNGA 2 cut(s) 273, 348
Hpy188III TCNNGA 2 cut(s) 68, 368
Hpy8I GTNNAC 2 cut(s) 145, 403
Hpy99I CGWCG 3 cut(s) 283, 341, 385
HpyAV CCTTC 2 cut(s) 146, 160
HpyCH4III ACNGT 4 cut(s) 16, 341, 385, 488
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 3 cut(s) 124, 305, 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 259
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 281
Hsp92I GRCGYC 1 cut(s) 236
Hsp92II CATG 2 cut(s) 428, 480
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 181, 343
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 4 cut(s) 127, 153, 243, 252
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 46, 385
MalI GATC 2 cut(s) 183, 345
MboI GATC 2 cut(s) 181, 343
MboII GAAGA 7 cut(s) 13, 19, 22, 95, 112, 344, 348
MluCI AATT 2 cut(s) 374, 429
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 2 cut(s) 17, 35
MseI TTAA 2 cut(s) 192, 296
MspI CCGG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 235, 259
NdeII GATC 2 cut(s) 181, 343
NlaIII CATG 2 cut(s) 428, 480
NlaIV GGNNCC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 244
PflFI GACNNNGTC 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 474
PspPI GGNCC 2 cut(s) 4, 473
PsyI GACNNNGTC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 192, 296
Sau3AI GATC 2 cut(s) 181, 343
Sau96I GGNCC 2 cut(s) 4, 473
SetI ASST 6 cut(s) 60, 99, 153, 179, 284, 295
SfaNI GCATC 1 cut(s) 264
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 2 cut(s) 374, 429
SspMI CTAG 1 cut(s) 317
TaaI ACNGT 4 cut(s) 16, 341, 385, 488
TaiI ACGT 1 cut(s) 284
TasI AATT 2 cut(s) 374, 429
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 2 cut(s) 192, 296
Tru9I TTAA 2 cut(s) 192, 296
TscAI CASTG 2 cut(s) 246, 307
TspDTI ATGAA 2 cut(s) 96, 345
TspRI CASTG 2 cut(s) 246, 307
Tth111I GACNNNGTC 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.