Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002693

Physical Location & Seq

Genomic Coordinates Reverse (-)

87193857 .. 87197950

Gene Structure 4094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG645200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTCTTCAAAACTCTGCTCTTCCTCTTCTTCGCCATTTTCTTAGTTATTACAAAGGTTTCAGCTTATGAGTTTGAGAATGAAAATGCCAAGAAGCCGAAGGCACCAACTCCCGAGGACATGCAAACTCCACCACTTCGAGTAAACAAGGTTTATGATGACAAGAAAACTAATCTTGAGGATATTATCAAATGGATCACGGGCATCCTCCCTGAGTCGAAGACGCCGGCGAATCCGACACCAAAAGCGCCTCAAAACCCAATGCCGAAGGTGCCACCACTTTCAAAAAAGGCACCACCACCACCACCACCACAGGGGAAGGAAGAAGACGACTATGCAATCAATCCCACCCCCTACCATGTTCCAGACTTCCAGCGGCCACCCAATTTTACACCATTAAAGCCCCCTACTAATTTTATACAGGATTGTAAGAGTACAGGATGCAGAAACCGTCCAAGGAAGCATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.69

Weight (kDa)

9.42

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g50220 FvH4_6g50240 FvH4_6g50250 FvH4_6g50900
rosa_chinensis	RchiOBHm_Chr2g0170461 RchiOBHm_Chr2g0170501 RchiOBHm_Chr2g0170511 RchiOBHm_Chr3g0464021
rosa_laevigata	RLG00000018108 RLG00000019049 RLG00000021959 RLG00000021962 RLG00000021963
rosa_multiflora	Rmu_sc0001705.1_g000024
rosa_roxburghii	Rroxscaffold_2G00081230 Rroxscaffold_2G00081250
rosa_rugosa	Rorug02G0549000 Rorug02G0549100 Rorug02G0549200 Rorug02G0549700 Rorug06G0139600
rosa_samantha	Rh2AG621100 Rh2AG621300 Rh2AG621400 Rh2BG632500 Rh2BG632800 Rh2BG639700 Rh2CG601800 Rh2CG602000 Rh2CG602100 Rh2DG645200 Rh2DG645600 Rh2DG650500 Rh3BG131200 Rh6BG254600 Rh6CG254200
rosa_wichuraiana	Rw2G051490 Rw2G051500 Rw2G051520 Rw2G052110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	103, 271, 292
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	10, 285
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AlwI	GGATC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	113
BanI	GGYRCC	3 cut(s)	103, 271, 292
BbsI	GAAGAC	2 cut(s)	227, 333
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	1 cut(s)	377
BlsI	GCNGC	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	113
BmiI	GGNNCC	3 cut(s)	105, 273, 294
BmsI	GCATC	2 cut(s)	213, 431
BpiI	GAAGAC	2 cut(s)	227, 333
BpuEI	CTTGAG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	114, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	114, 455
BseGI	GGATG	2 cut(s)	204, 446
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	379
BshNI	GGYRCC	3 cut(s)	103, 271, 292
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	314
BsnI	GGCC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	3 cut(s)	105, 273, 294
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	3 cut(s)	103, 271, 292
BsrFI	RCCGGY	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	114, 455
BssMI	GATC	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	452
Bst6I	CTCTTC	2 cut(s)	26, 32
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	228, 465
BstDEI	CTNAG	2 cut(s)	43, 213
BstF5I	GGATG	2 cut(s)	204, 446
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNSI	RCATGY	2 cut(s)	124, 467
BstV2I	GAAGAC	2 cut(s)	227, 333
BsuRI	GGCC	1 cut(s)	379
BtsCI	GGATG	2 cut(s)	204, 446
Cac8I	GCNNGC	2 cut(s)	228, 465
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	226
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	3 cut(s)	121, 359, 464
CviJI	RGCY	4 cut(s)	65, 97, 379, 403
CviKI_1	RGCY	4 cut(s)	65, 97, 379, 403
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	2 cut(s)	43, 213
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	26, 32
EarI	CTCTTC	2 cut(s)	26, 32
Eco130I	CCWWGG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	3 cut(s)	124, 362, 467
FaiI	YATR	7 cut(s)	69, 122, 156, 336, 360, 419, 465
FatI	CATG	3 cut(s)	120, 358, 463
Fnu4HI	GCNGC	1 cut(s)	377
FokI	GGATG	2 cut(s)	191, 453
Fsp4HI	GCNGC	1 cut(s)	377
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	379
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	124, 362, 467
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	2 cut(s)	215, 232
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	3 cut(s)	113, 176, 365
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	94, 262, 313
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4V	TGCA	3 cut(s)	124, 338, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	2 cut(s)	43, 213
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	124, 362, 467
HspAI	GCGC	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	195
LguI	GCTCTTC	1 cut(s)	26
LpnPI	CCDG	7 cut(s)	225, 240, 299, 378, 386, 407, 423
LweI	GCATC	2 cut(s)	213, 431
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	6 cut(s)	13, 19, 22, 232, 335, 338
MluCI	AATT	2 cut(s)	385, 412
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	35, 109, 172, 218, 261
MreI	CGCCGGCG	1 cut(s)	226
MroNI	GCCGGC	1 cut(s)	226
MseI	TTAA	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	271
NaeI	GCCGGC	1 cut(s)	228
NdeII	GATC	1 cut(s)	195
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	124, 362, 467
NlaIV	GGNNCC	3 cut(s)	105, 273, 294
NspI	RCATGY	2 cut(s)	124, 467
PaeI	GCATGC	1 cut(s)	467
PciSI	GCTCTTC	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	378
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PspN4I	GGNNCC	3 cut(s)	105, 273, 294
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	1 cut(s)	377
Sau3AI	GATC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	224
SetI	ASST	4 cut(s)	60, 67, 153, 273
SfaNI	GCATC	2 cut(s)	213, 431
SgrAI	CRCCGGYG	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	467
Sse9I	AATT	2 cut(s)	385, 412
SsiI	CCGC	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	452
TaqI	TCGA	2 cut(s)	139, 218
TasI	AATT	2 cut(s)	385, 412
TatI	WGTACW	1 cut(s)	434
TauI	GCSGC	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TspDTI	ATGAA	1 cut(s)	96
XceI	RCATGY	2 cut(s)	124, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.