Rorug02G0549100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002693
Physical Location & Seq
Forward (+)
67679560 .. 67680242
683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0549100.1

Sequence Viewer

Length: 498 bp
ATGGAATTGCCAGACTACTCATTGGTTAAGAATCTTGTAATGAAGGTTAAAAAGGAGATGTTCTCATCTTCATCTTCATCATCAGAACATGATGATGATCATGTAGTGGATGATGTATATCGTCTTGTGTCTCCTTCTGCTTACGACACTGCTTGGCTCGCCATGGTTCCGAATCCTGAAAAACCAGATCGGCCCTTGTTCCGGGGATGCTTGCAATGGGTGCTCCGGAACCAAAAACCAGGAGGCTTCTGGGGATCATCAGAGTCGACCTCTATAAGTACCTTATACTCCCTCACTTCGACTCTCGCTTGCATTGTTGCACTCACCACCTGGAGTGTTGGCCACACTGCCATTCAAAAGGATTGGTGTCTAGGGTTGGGGTTCATTCATGCAAATGCAGAAGAGATACTGAAAGAGCAAAATGGCTGCTTTCCCGAGTGGTTTGTGAAAGCTAGGGTTCTTGAGGTAACAGCTAGAGAGAAGAGAGAGATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.63

Weight (kDa)

5.56

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 266
AccIII TCCGGA 1 cut(s) 225
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 1 cut(s) 340
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 1 cut(s) 356
AjnI CCWGG 2 cut(s) 238, 329
AluBI AGCT 2 cut(s) 452, 473
AluI AGCT 2 cut(s) 452, 473
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 434
Aor13HI TCCGGA 1 cut(s) 225
AoxI GGCC 2 cut(s) 191, 340
ApeKI GCWGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 192
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 434
BalI TGGCCA 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 413
BciT130I CCWGG 2 cut(s) 240, 331
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 3 cut(s) 371, 453, 474
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
Bme1390I CCNGG 3 cut(s) 203, 240, 331
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 168, 230
BmrFI CCNGG 3 cut(s) 203, 240, 331
BmsI GCATC 1 cut(s) 197
BplI GAGNNNNNCTC 4 cut(s) 47, 79, 254, 286
BpmI CTGGAG 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 482
BpuMI CCSGG 1 cut(s) 203
BsaBI GATNNNNATC 2 cut(s) 96, 117
BsaJI CCNNGG 2 cut(s) 162, 202
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 221
Bse8I GATNNNNATC 2 cut(s) 96, 117
BseAI TCCGGA 1 cut(s) 225
BseBI CCWGG 2 cut(s) 240, 331
BseDI CCNNGG 2 cut(s) 162, 202
BseGI GGATG 2 cut(s) 115, 212
BseJI GATNNNNATC 2 cut(s) 96, 117
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 413
BshFI GGCC 2 cut(s) 193, 342
BsiHKAI GWGCWC 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 2 cut(s) 202, 226
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 2 cut(s) 193, 342
BsoBI CYCGRG 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 225
Bsp13I TCCGGA 1 cut(s) 225
Bsp143I GATC 3 cut(s) 97, 187, 254
Bsp19I CCATGG 1 cut(s) 162
BspANI GGCC 2 cut(s) 193, 342
BspEI TCCGGA 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 168, 230
BspPI GGATC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 162, 202
BssMI GATC 3 cut(s) 97, 187, 254
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 240, 331
Bst6I CTCTTC 2 cut(s) 396, 476
BstAPI GCANNNNNTGC 1 cut(s) 220
BstC8I GCNNGC 3 cut(s) 159, 212, 310
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 115, 212
BstKTI GATC 3 cut(s) 100, 190, 257
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 3 cut(s) 97, 187, 254
BstMWI GCNNNNNNNGC 2 cut(s) 158, 220
BstNI CCWGG 2 cut(s) 240, 331
BstSCI CCNGG 3 cut(s) 201, 238, 329
BstV1I GCAGC 1 cut(s) 413
BsuRI GGCC 2 cut(s) 193, 342
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 115, 212
BtsI GCAGTG 2 cut(s) 147, 345
BtsIMutI CAGTG 2 cut(s) 147, 345
Cac8I GCNNGC 3 cut(s) 159, 212, 310
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 279
CviAII CATG 4 cut(s) 89, 101, 163, 389
CviJI RGCY 7 cut(s) 157, 193, 246, 342, 426, 452, 473
CviKI_1 RGCY 7 cut(s) 157, 193, 246, 342, 426, 452, 473
CviQI GTAC 1 cut(s) 279
DpnI GATC 3 cut(s) 99, 189, 256
DpnII GATC 3 cut(s) 97, 187, 254
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 396, 476
EarI CTCTTC 2 cut(s) 396, 476
Eco130I CCWWGG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 238, 329
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 4 cut(s) 92, 104, 166, 392
FaiI YATR 7 cut(s) 90, 102, 118, 164, 275, 286, 390
FatI CATG 4 cut(s) 88, 100, 162, 388
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 2 cut(s) 122, 219
Fsp4HI GCNGC 1 cut(s) 427
FspBI CTAG 3 cut(s) 371, 453, 474
GluI GCNGC 1 cut(s) 427
GsuI CTGGAG 1 cut(s) 352
HaeIII GGCC 2 cut(s) 193, 342
HapII CCGG 2 cut(s) 202, 226
Hin1II CATG 4 cut(s) 92, 104, 166, 392
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 4 cut(s) 31, 172, 263, 301
HpaII CCGG 2 cut(s) 202, 226
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 3 cut(s) 85, 171, 262
Hpy188III TCNNGA 4 cut(s) 176, 226, 434, 461
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 2 cut(s) 37, 144
HpyCH4V TGCA 5 cut(s) 214, 312, 320, 392, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 220
Hsp92II CATG 4 cut(s) 92, 104, 166, 392
Kpn2I TCCGGA 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 97, 187, 254
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 1 cut(s) 197
MaeI CTAG 3 cut(s) 371, 453, 474
MaeIII GTNAC 1 cut(s) 466
MalI GATC 3 cut(s) 99, 189, 256
MboI GATC 3 cut(s) 97, 187, 254
MboII GAAGA 4 cut(s) 60, 66, 413, 493
MhlI GDGCHC 1 cut(s) 225
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 2 cut(s) 5, 493
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 2 cut(s) 272, 295
MnlI CCTC 4 cut(s) 236, 280, 302, 457
Mox20I TGGCCA 1 cut(s) 342
MroI TCCGGA 1 cut(s) 225
MscI TGGCCA 1 cut(s) 342
MseI TTAA 2 cut(s) 27, 48
MslI CAYNNNNRTG 2 cut(s) 93, 393
Msp20I TGGCCA 1 cut(s) 342
MspI CCGG 2 cut(s) 202, 226
MspR9I CCNGG 3 cut(s) 203, 240, 331
MvaI CCWGG 2 cut(s) 240, 331
MwoI GCNNNNNNNGC 2 cut(s) 158, 220
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 162
NdeII GATC 3 cut(s) 97, 187, 254
NlaIII CATG 4 cut(s) 92, 104, 166, 392
NlaIV GGNNCC 2 cut(s) 168, 230
PfeI GAWTC 2 cut(s) 31, 172
PkrI GCNGC 1 cut(s) 428
PleI GAGTC 2 cut(s) 271, 295
PpsI GAGTC 2 cut(s) 271, 295
Psp6I CCWGG 2 cut(s) 238, 329
PspGI CCWGG 2 cut(s) 238, 329
PspN4I GGNNCC 2 cut(s) 168, 230
PspPI GGNCC 1 cut(s) 192
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
RseI CAYNNNNRTG 2 cut(s) 93, 393
SalI GTCGAC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 27, 48
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 3 cut(s) 97, 187, 254
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 2 cut(s) 272, 295
ScrFI CCNGG 3 cut(s) 203, 240, 331
SduI GDGCHC 1 cut(s) 225
SetI ASST 7 cut(s) 48, 272, 284, 332, 454, 468, 475
SfaNI GCATC 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 93, 393
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 2 cut(s) 5, 493
SspMI CTAG 3 cut(s) 371, 453, 474
StyD4I CCNGG 3 cut(s) 201, 238, 329
StyI CCWWGG 1 cut(s) 162
TaqI TCGA 2 cut(s) 266, 299
TasI AATT 2 cut(s) 5, 493
TfiI GAWTC 2 cut(s) 31, 172
Tru1I TTAA 2 cut(s) 27, 48
Tru9I TTAA 2 cut(s) 27, 48
TscAI CASTG 2 cut(s) 154, 352
TseI GCWGC 1 cut(s) 426
TspDTI ATGAA 5 cut(s) 56, 60, 66, 373, 377
TspRI CASTG 2 cut(s) 154, 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 3 cut(s) 371, 453, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.