Rh6CG254200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002693
Physical Location & Seq
Forward (+)
42468636 .. 42486848
18213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG254200.1

Sequence Viewer

Length: 321 bp
ATGGCTAAGCTAGATTTGGAGATGGAGTTTCTAGATTTGGAGATGGAGTTTCGCGAGGAGATTCAGTGGGTTTACGGTGACCAGAAACAACTAGGGTCGTTGATCAATTGGTTGAGGCAAGCGGCCAAACAAGAAGCCAAAGAAGCGGCCAAAGAGGCAGGCAAAGAAGTGGGGCTTTCCAAATCCTCCTCCGACTCTCTCCACCGACCGACGACGACCAGTCATCTCCGTCACTCCCGCAACTTGGGTGCTAAGTCACTAAAACCCTTTCCATATTTGAAAACCCTCCCCCTATTTAAAACCCACGTAAGACTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.18

Weight (kDa)

9.26

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 54
AciI CCGC 3 cut(s) 122, 146, 238
AcoI YGGCCR 2 cut(s) 123, 147
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 280
AhdI GACNNNNNGTC 1 cut(s) 219
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
AoxI GGCC 2 cut(s) 123, 147
AsuHPI GGTGA 1 cut(s) 89
BccI CCATC 2 cut(s) 16, 37
BclI TGATCA 1 cut(s) 102
BfaI CTAG 3 cut(s) 11, 32, 92
BglI GCCNNNNNGGC 1 cut(s) 155
BisI GCNGC 2 cut(s) 123, 147
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 124, 148
BmeRI GACNNNNNGTC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 307
BsaXI ACNNNNNCTCC 6 cut(s) 11, 32, 41, 50, 62, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 2 cut(s) 71, 178
Bsh1236I CGCG 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 2 cut(s) 125, 149
BsiEI CGRYCG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 244
BsnI GGCC 2 cut(s) 125, 149
Bsp143I GATC 1 cut(s) 102
Bsp1720I GCTNAGC 1 cut(s) 6
Bsp68I TCGCGA 1 cut(s) 54
BspACI CCGC 3 cut(s) 122, 146, 238
BspANI GGCC 2 cut(s) 125, 149
BspFNI CGCG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 219
BssMI GATC 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 120, 160
BstDEI CTNAG 2 cut(s) 6, 252
BstEII GGTNACC 1 cut(s) 77
BstFNI CGCG 1 cut(s) 54
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMCI CGRYCG 1 cut(s) 209
BstMWI GCNNNNNNNGC 2 cut(s) 143, 155
BstPI GGTNACC 1 cut(s) 77
BstUI CGCG 1 cut(s) 54
BsuRI GGCC 2 cut(s) 125, 149
BtsIMutI CAGTG 1 cut(s) 71
BtuMI TCGCGA 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 120, 160
CviJI RGCY 6 cut(s) 5, 10, 125, 137, 149, 175
CviKI_1 RGCY 6 cut(s) 5, 10, 125, 137, 149, 175
DdeI CTNAG 2 cut(s) 6, 252
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
DraI TTTAAA 1 cut(s) 298
DriI GACNNNNNGTC 1 cut(s) 219
EaeI YGGCCR 2 cut(s) 123, 147
Eam1105I GACNNNNNGTC 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 77
FaiI YATR 1 cut(s) 274
FalI AAGNNNNNCTT 3 cut(s) 159, 191, 301
FauI CCCGC 1 cut(s) 245
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 123, 147
Fsp4HI GCNGC 2 cut(s) 123, 147
FspBI CTAG 3 cut(s) 11, 32, 92
GluI GCNGC 2 cut(s) 123, 147
HaeIII GGCC 2 cut(s) 125, 149
HinfI GANTC 3 cut(s) 61, 194, 312
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 32, 53
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 2 cut(s) 214, 217
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 155
HpyF3I CTNAG 2 cut(s) 6, 252
HpySE526I ACGT 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 1 cut(s) 102
LpnPI CCDG 3 cut(s) 95, 144, 232
MaeI CTAG 3 cut(s) 11, 32, 92
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 77, 230, 255
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MfeI CAATTG 1 cut(s) 106
MluCI AATT 1 cut(s) 106
MlyI GAGTC 2 cut(s) 188, 306
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 6 cut(s) 49, 108, 148, 196, 199, 296
MseI TTAA 1 cut(s) 297
MunI CAATTG 1 cut(s) 106
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 143, 155
NdeII GATC 1 cut(s) 102
NmuCI GTSAC 3 cut(s) 77, 230, 255
NruI TCGCGA 1 cut(s) 54
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 124, 148
PleI GAGTC 2 cut(s) 188, 306
PpsI GAGTC 2 cut(s) 188, 306
Ppu21I YACGTR 1 cut(s) 307
PspEI GGTNACC 1 cut(s) 77
RruI TCGCGA 1 cut(s) 54
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 2 cut(s) 123, 147
Sau3AI GATC 1 cut(s) 102
SchI GAGTC 2 cut(s) 188, 306
SetI ASST 2 cut(s) 12, 309
Sse9I AATT 1 cut(s) 106
SsiI CCGC 3 cut(s) 122, 146, 238
SspMI CTAG 3 cut(s) 11, 32, 92
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 309
TaqII GACCGA 1 cut(s) 223
TasI AATT 1 cut(s) 106
TauI GCSGC 2 cut(s) 125, 149
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 3 cut(s) 77, 230, 255
Tsp45I GTSAC 3 cut(s) 77, 230, 255
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 1 cut(s) 71
XbaI TCTAGA 1 cut(s) 31
XspI CTAG 3 cut(s) 11, 32, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.