Rh2CG601800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002693
Physical Location & Seq
Reverse (-)
77725417 .. 77727511
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG601800.1

Sequence Viewer

Length: 492 bp
ATGGAGCTCGGAACGTATACCTCTTCGTCGAGACCAGGAGGCATCAACAACCAACTTCACCACCAGGAAAACGTCATCTCTTCAAACATGAATCGCATACCAATTGCATGCACGTTTCCTTGGCGTCAAGATGAGATGGTAAATAATGCAGCATTTGCTATTTGTGAAGTTTACGATGACGAGAAAACTAATCTTCAGAATTTTATCGACTGGATCTGGAACACCCTGCCTAAACCTAAGCCGGAGACGCCGCCGAATCCGACCCCGAAAGTGCCGCAAAATCCGATGCCAAATGTGCCACCACCTTCAAAAAAGGCACCCCCACCACCACCGGAGAAAGAAGGAGAAGACGTTGGTAAAACAATCAAGCCCGCCCCCTACCATCAAGACTTCCAGCCGCCACCCAATTTTACACCATTAAGGCCCCGAACTATATCTTTAAATGATTGCCTGAGTGTAGCATGCAGAAACCGTCCAAGGGAGCATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.39

Weight (kDa)

6.89

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 316
AccI GTMKAC 1 cut(s) 17
AciI CCGC 4 cut(s) 251, 275, 372, 398
AclWI GGATC 1 cut(s) 221
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 179
AcyI GRCGYC 2 cut(s) 124, 248
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 2 cut(s) 84, 309
AjnI CCWGG 2 cut(s) 34, 63
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 25, 239
AlwI GGATC 1 cut(s) 221
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 423
AsuHPI GGTGA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 161
BccI CCATC 2 cut(s) 130, 390
BciT130I CCWGG 2 cut(s) 36, 65
BcoDI GTCTC 2 cut(s) 25, 239
BisI GCNGC 4 cut(s) 150, 251, 275, 398
BlsI GCNGC 4 cut(s) 151, 252, 276, 399
Bme1390I CCNGG 2 cut(s) 36, 65
BmgT120I GGNCC 1 cut(s) 423
BmiI GGNNCC 2 cut(s) 318, 425
BmrFI CCNGG 2 cut(s) 36, 65
BmsI GCATC 2 cut(s) 51, 276
BpiI GAAGAC 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 237
BsaHI GRCGYC 2 cut(s) 124, 248
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 119, 476
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 215
BseBI CCWGG 2 cut(s) 36, 65
BseDI CCNNGG 2 cut(s) 119, 476
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 424
BshNI GGYRCC 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 2 cut(s) 242, 332
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 2 cut(s) 25, 239
BsmBI CGTCTC 1 cut(s) 239
BsnI GGCC 1 cut(s) 424
Bso31I GGTCTC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 4 cut(s) 251, 275, 372, 398
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 318, 425
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 119, 476
BssMI GATC 1 cut(s) 213
BssNAI GTATAC 1 cut(s) 18
BssNI GRCGYC 2 cut(s) 124, 248
BssT1I CCWWGG 2 cut(s) 119, 476
Bst1107I GTATAC 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 36, 65
Bst4CI ACNGT 1 cut(s) 473
Bst6I CTCTTC 2 cut(s) 28, 85
BstACI GRCGYC 2 cut(s) 124, 248
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 4 cut(s) 109, 372, 463, 486
BstDEI CTNAG 2 cut(s) 237, 452
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 2 cut(s) 25, 239
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 3 cut(s) 155, 247, 295
BstNI CCWGG 2 cut(s) 36, 65
BstNSI RCATGY 3 cut(s) 111, 465, 488
BstSCI CCNGG 2 cut(s) 34, 63
BstV1I GCAGC 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 424
Cac8I GCNNGC 4 cut(s) 109, 372, 463, 486
Cfr13I GGNCC 1 cut(s) 423
CseI GACGC 2 cut(s) 113, 256
CviAII CATG 5 cut(s) 88, 108, 462, 485, 489
CviJI RGCY 5 cut(s) 7, 241, 370, 397, 424
CviKI_1 RGCY 5 cut(s) 7, 241, 370, 397, 424
DdeI CTNAG 2 cut(s) 237, 452
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
DraI TTTAAA 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 28, 85
EarI CTCTTC 2 cut(s) 28, 85
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 119, 476
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 423
EcoRII CCWGG 2 cut(s) 34, 63
EcoT14I CCWWGG 2 cut(s) 119, 476
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 119, 476
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 5 cut(s) 91, 111, 465, 488, 492
FaiI YATR 8 cut(s) 18, 89, 98, 109, 434, 463, 486, 490
FatI CATG 5 cut(s) 87, 107, 461, 484, 488
FauI CCCGC 1 cut(s) 379
FblI GTMKAC 1 cut(s) 17
Fnu4HI GCNGC 4 cut(s) 150, 251, 275, 398
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 4 cut(s) 150, 251, 275, 398
GluI GCNGC 4 cut(s) 150, 251, 275, 398
HaeIII GGCC 1 cut(s) 424
HapII CCGG 2 cut(s) 242, 332
HgaI GACGC 2 cut(s) 113, 256
Hin1I GRCGYC 2 cut(s) 124, 248
Hin1II CATG 5 cut(s) 91, 111, 465, 488, 492
HinfI GANTC 2 cut(s) 91, 256
HpaII CCGG 2 cut(s) 242, 332
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 18, 172
Hpy188I TCNGA 4 cut(s) 11, 198, 261, 285
Hpy188III TCNNGA 4 cut(s) 30, 128, 217, 386
Hpy8I GTNNAC 2 cut(s) 18, 172
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 315, 335
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4IV ACGT 4 cut(s) 14, 72, 113, 351
HpyCH4V TGCA 5 cut(s) 107, 111, 149, 465, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 247, 295
HpyF3I CTNAG 2 cut(s) 237, 452
HpySE526I ACGT 4 cut(s) 14, 72, 113, 351
Hsp92I GRCGYC 2 cut(s) 124, 248
Hsp92II CATG 5 cut(s) 91, 111, 465, 488, 492
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 2 cut(s) 4, 481
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 2 cut(s) 51, 276
MaeII ACGT 4 cut(s) 14, 72, 113, 351
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 4 cut(s) 15, 72, 185, 359
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 3 cut(s) 102, 199, 406
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 2 cut(s) 31, 32
Mph1103I ATGCAT 1 cut(s) 490
MseI TTAA 2 cut(s) 419, 440
MspI CCGG 2 cut(s) 242, 332
MspR9I CCNGG 2 cut(s) 36, 65
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 2 cut(s) 36, 65
MwoI GCNNNNNNNGC 3 cut(s) 155, 247, 295
NdeII GATC 1 cut(s) 213
NlaIII CATG 5 cut(s) 91, 111, 465, 488, 492
NlaIV GGNNCC 2 cut(s) 318, 425
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 3 cut(s) 111, 465, 488
PaeI GCATGC 3 cut(s) 111, 465, 488
PfeI GAWTC 2 cut(s) 91, 256
PkrI GCNGC 4 cut(s) 151, 252, 276, 399
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 34, 63
PspGI CCWGG 2 cut(s) 34, 63
PspN4I GGNNCC 2 cut(s) 318, 425
PspPI GGNCC 1 cut(s) 423
PsuI RGATCY 1 cut(s) 213
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 419, 440
SatI GCNGC 4 cut(s) 150, 251, 275, 398
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 423
ScrFI CCNGG 2 cut(s) 36, 65
SduI GDGCHC 1 cut(s) 9
SetI ASST 8 cut(s) 9, 17, 23, 75, 116, 238, 307, 354
SfaNI GCATC 2 cut(s) 51, 276
SphI GCATGC 3 cut(s) 111, 465, 488
Sse9I AATT 3 cut(s) 102, 199, 406
SsiI CCGC 4 cut(s) 251, 275, 372, 398
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 34, 63
StyI CCWWGG 2 cut(s) 119, 476
TaaI ACNGT 1 cut(s) 473
TaiI ACGT 4 cut(s) 17, 75, 116, 354
TaqI TCGA 2 cut(s) 29, 207
TasI AATT 3 cut(s) 102, 199, 406
TauI GCSGC 3 cut(s) 253, 277, 400
TfiI GAWTC 2 cut(s) 91, 256
Tru1I TTAA 2 cut(s) 419, 440
Tru9I TTAA 2 cut(s) 419, 440
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 104
XapI RAATTY 1 cut(s) 199
XceI RCATGY 3 cut(s) 111, 465, 488
XmiI GTMKAC 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.