RchiOBHm_Chr2g0170501

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
84453731 .. 84454870
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53801

Sequence Viewer

Length: 294 bp
ATGGCCTTTAGAACTTTGCTTTTTCTGTTCTTCGCCATTCTCTTGGTTAATACAATGGTTTCAGCTGAGGAATTGGAAGGTGAAAAGTCCAAGAAGCCGAAGGTTTATGGTGACGAGAAATTTGAAAAAAATTGGCATGGGCTTCGCCCGTGTGTTAGGAAGGTGCCTGGGAGGAGTTACCCGCAAGTGGTGGAAAGTTTTTGTTACCCGACCAACCCTGAGGAGAAGCCAATACAACAGGGAGGTGTCATTGAAGGTGTTCCCGTTATAATTCGTGACGAACCATCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.04

Weight (kDa)

6.58

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 163
AciI CCGC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 2 cut(s) 125, 254
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
Asp700I GAANNNNTTC 1 cut(s) 258
AsuHPI GGTGA 3 cut(s) 92, 122, 279
AxyI CCTNAGG 1 cut(s) 219
BanI GGYRCC 1 cut(s) 163
BbvCI CCTCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse21I CCTNAGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 2 cut(s) 57, 210
BseRI GAGGAG 2 cut(s) 187, 236
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 187
BsnI GGCC 1 cut(s) 5
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 58, 211
BspLI GGNNCC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 66, 219
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 43
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 1 cut(s) 5
CviAII CATG 1 cut(s) 137
CviJI RGCY 5 cut(s) 5, 65, 97, 142, 229
CviKI_1 RGCY 5 cut(s) 5, 65, 97, 142, 229
DdeI CTNAG 2 cut(s) 66, 219
Eco81I CCTNAGG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 1 cut(s) 140
FaiI YATR 3 cut(s) 108, 138, 269
FatI CATG 1 cut(s) 136
FauI CCCGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 140
HphI GGTGA 3 cut(s) 92, 122, 279
Hpy188III TCNNGA 1 cut(s) 275
HpyAV CCTTC 4 cut(s) 71, 94, 154, 248
HpyF3I CTNAG 2 cut(s) 66, 219
Hsp92II CATG 1 cut(s) 140
LpnPI CCDG 4 cut(s) 153, 180, 224, 231
MaeIII GTNAC 4 cut(s) 110, 176, 203, 275
MboII GAAGA 1 cut(s) 22
MluCI AATT 4 cut(s) 71, 119, 130, 270
MnlI CCTC 4 cut(s) 61, 165, 214, 236
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 2 cut(s) 48, 292
MspA1I CMGCKG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 2 cut(s) 110, 275
PdmI GAANNNNTTC 1 cut(s) 258
PsiI TTATAA 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 65
SaqAI TTAA 2 cut(s) 48, 292
ScrFI CCNGG 1 cut(s) 168
SetI ASST 7 cut(s) 67, 82, 105, 165, 247, 259, 292
Sse9I AATT 4 cut(s) 71, 119, 130, 270
SsiI CCGC 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 166
TasI AATT 4 cut(s) 71, 119, 130, 270
Tru1I TTAA 2 cut(s) 48, 292
Tru9I TTAA 2 cut(s) 48, 292
TseFI GTSAC 2 cut(s) 110, 275
Tsp45I GTSAC 2 cut(s) 110, 275
XapI RAATTY 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.