Rh2AG621300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002693
Physical Location & Seq
Reverse (-)
84495991 .. 84503843
7853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG621300.1

Sequence Viewer

Length: 342 bp
ATGGCCTTTAGAACTTTGCTTTTTCTGTTCTTCGCCATTCTCTTAGTTAATACAATGGTTTACGGTGACGAGAAATTTTTAAAAAATTGGCATGGGCTTCGCCCGTGTGTTAGGAAGGTGCCTGGGAGCAGTTACCCGCAAGTGGTGGAAAGTTTTTGTTACCCGACCAACCCTGAGGAGAAGCCAATACAACAGGTTAACGGTGATGAGAAATTTTTCAAAAATTGGCGTGGTGCTCTCCCTTATGTTAGGAGGGTGCCTGGGAAGGCTTACTTGGCAGTAATAGGATATTATTGTGATGACTCGAGTCACTCGACCGACCCTGAGGCGAAGCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.04

Weight (kDa)

8.79

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 118, 256
AciI CCGC 1 cut(s) 137
AcsI RAATTY 2 cut(s) 74, 212
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 2 cut(s) 121, 259
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
Alw21I GWGCWC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 74, 212
Asp700I GAANNNNTTC 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 77, 215
AvaI CYCGRG 1 cut(s) 304
AxyI CCTNAGG 2 cut(s) 174, 324
BanI GGYRCC 2 cut(s) 118, 256
Bbv12I GWGCWC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 2 cut(s) 123, 261
Bme1390I CCNGG 2 cut(s) 123, 261
BmeT110I CYCGRG 1 cut(s) 304
BmiI GGNNCC 2 cut(s) 120, 258
BmrFI CCNGG 2 cut(s) 123, 261
BoxI GACNNNNGTC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 122, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse21I CCTNAGG 2 cut(s) 174, 324
BseBI CCWGG 2 cut(s) 123, 261
BseDI CCNNGG 2 cut(s) 122, 260
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 165, 315
BseRI GAGGAG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 118, 256
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 142
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 238
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 166, 316
BspLI GGNNCC 2 cut(s) 120, 258
BspT107I GGYRCC 2 cut(s) 118, 256
BssECI CCNNGG 2 cut(s) 122, 260
Bst2UI CCWGG 2 cut(s) 123, 261
Bst4CI ACNGT 2 cut(s) 65, 203
BstDEI CTNAG 3 cut(s) 43, 174, 324
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 2 cut(s) 123, 261
BstPAI GACNNNNGTC 1 cut(s) 306
BstSCI CCNGG 2 cut(s) 121, 259
Bsu36I CCTNAGG 2 cut(s) 174, 324
BsuRI GGCC 1 cut(s) 5
CviAII CATG 1 cut(s) 92
CviJI RGCY 4 cut(s) 5, 97, 184, 269
CviKI_1 RGCY 4 cut(s) 5, 97, 184, 269
DdeI CTNAG 3 cut(s) 43, 174, 324
DraI TTTAAA 1 cut(s) 81
Eco81I CCTNAGG 2 cut(s) 174, 324
Eco88I CYCGRG 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 121, 259
FaeI CATG 1 cut(s) 95
FaiI YATR 3 cut(s) 93, 246, 340
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 1 cut(s) 91
FauI CCCGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 95
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 2 cut(s) 302, 307
HpaI GTTAAC 1 cut(s) 199
HphI GGTGA 2 cut(s) 77, 215
Hpy166II GTNNAC 2 cut(s) 61, 199
Hpy8I GTNNAC 2 cut(s) 61, 199
HpyAV CCTTC 2 cut(s) 109, 259
HpyCH4III ACNGT 2 cut(s) 65, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 3 cut(s) 43, 174, 324
Hsp92II CATG 1 cut(s) 95
KspAI GTTAAC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 7 cut(s) 108, 135, 179, 186, 246, 273, 336
MaeIII GTNAC 4 cut(s) 65, 131, 158, 308
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 4 cut(s) 74, 85, 212, 223
MlyI GAGTC 2 cut(s) 296, 316
MnlI CCTC 3 cut(s) 169, 246, 319
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 3 cut(s) 48, 80, 198
MspR9I CCNGG 2 cut(s) 123, 261
MvaI CCWGG 2 cut(s) 123, 261
MwoI GCNNNNNNNGC 1 cut(s) 275
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 2 cut(s) 120, 258
NmuCI GTSAC 2 cut(s) 65, 308
PaeR7I CTCGAG 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 215
PleI GAGTC 2 cut(s) 296, 315
PpsI GAGTC 2 cut(s) 296, 315
PshAI GACNNNNGTC 1 cut(s) 306
Psp6I CCWGG 2 cut(s) 121, 259
PspGI CCWGG 2 cut(s) 121, 259
PspN4I GGNNCC 2 cut(s) 120, 258
PspXI VCTCGAGB 1 cut(s) 304
SaqAI TTAA 3 cut(s) 48, 80, 198
SchI GAGTC 2 cut(s) 296, 316
ScrFI CCNGG 2 cut(s) 123, 261
SduI GDGCHC 1 cut(s) 238
SetI ASST 2 cut(s) 120, 198
Sfr274I CTCGAG 1 cut(s) 304
SlaI CTCGAG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 4 cut(s) 74, 85, 212, 223
SsiI CCGC 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 121, 259
TaaI ACNGT 2 cut(s) 65, 203
TaqI TCGA 2 cut(s) 305, 314
TaqII GACCGA 1 cut(s) 332
TasI AATT 4 cut(s) 74, 85, 212, 223
Tru1I TTAA 3 cut(s) 48, 80, 198
Tru9I TTAA 3 cut(s) 48, 80, 198
TseFI GTSAC 2 cut(s) 65, 308
Tsp45I GTSAC 2 cut(s) 65, 308
XapI RAATTY 2 cut(s) 74, 212
XhoI CTCGAG 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.