Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002693

Physical Location & Seq

Genomic Coordinates Forward (+)

11084087 .. 11087327

Gene Structure 3241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG131200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTCTTCAAAATTTTGCTCTTCCTCTTCTTTGCCATTCTCTTAGTTACTACAAAGGTTTCAGCTGATGAATTTGAGAATGGACAGGCCAAGAAGCCGAAGGCACCAACTCCCGACAACATGCAAACTCCACCACTTTCAATAAACAAGAGTTCATTGATATCATTGGATGATGGTGACCAGAAAATCATGAGTATTGGGATGTTCCGCCCGATCGTGTTCCCGCGTGGGGGGTTCGGCGGCGGAAGGGCATTTCCAAAGCCGAGGCCGAATCCGAATCCGAATCCAAAGCTGACGCCCAAGCAGCCGCCCCAAAATGACAAAAAGCCAAACCCGACGCCAAAGCAGCCGCCCCAAAATGACAAAAAGCCAAAGCCGAAGGAAGAGAATAAGGACAAGCCAGATGATAAGGACCTTCAGGTACCTTCCCAACCTGACTCCCCTTCGCCACCTCCACCATCTTCAGCACCAGCTCCCTCACCTCAAGATGAGAACGTGCCGGCTTCGGCACCCGGAGAGACACCAGCTCCCCCACCTCAAGATGACAACTTACCGGCCTCGGCACCCGTAGAGACACCAGCTCCCTCACCTCAAGATGACAACGTATTGGCACCATCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.2

Weight (kDa)

6.33

Isoelectric Point (pI)

66.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g50220 FvH4_6g50240 FvH4_6g50250 FvH4_6g50900
rosa_chinensis	RchiOBHm_Chr2g0170461 RchiOBHm_Chr2g0170501 RchiOBHm_Chr2g0170511 RchiOBHm_Chr3g0464021
rosa_laevigata	RLG00000018108 RLG00000019049 RLG00000021959 RLG00000021962 RLG00000021963
rosa_multiflora	Rmu_sc0001705.1_g000024
rosa_roxburghii	Rroxscaffold_2G00081230 Rroxscaffold_2G00081250
rosa_rugosa	Rorug02G0549000 Rorug02G0549100 Rorug02G0549200 Rorug02G0549700 Rorug06G0139600
rosa_samantha	Rh2AG621100 Rh2AG621300 Rh2AG621400 Rh2BG632500 Rh2BG632800 Rh2BG639700 Rh2CG601800 Rh2CG602000 Rh2CG602100 Rh2DG645200 Rh2DG645600 Rh2DG650500 Rh3BG131200 Rh6BG254600 Rh6CG254200
rosa_wichuraiana	Rw2G051490 Rw2G051500 Rw2G051520 Rw2G052110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	421
AccB1I	GGYRCC	5 cut(s)	103, 421, 508, 562, 610
AccII	CGCG	1 cut(s)	226
AciI	CCGC	6 cut(s)	208, 224, 240, 243, 308, 350
AcsI	RAATTY	2 cut(s)	12, 71
AcuI	CTGAAG	2 cut(s)	401, 447
AcyI	GRCGYC	2 cut(s)	296, 338
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	2 cut(s)	229, 230
AgsI	TTSAA	2 cut(s)	10, 141
AluBI	AGCT	5 cut(s)	65, 292, 473, 527, 581
AluI	AGCT	5 cut(s)	65, 292, 473, 527, 581
Alw26I	GTCTC	2 cut(s)	512, 566
AoxI	GGCC	3 cut(s)	87, 266, 555
ApeKI	GCWGC	2 cut(s)	304, 346
ApoI	RAATTY	2 cut(s)	12, 71
Asp718I	GGTACC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	3 cut(s)	188, 471, 579
AvaII	GGWCC	1 cut(s)	412
BanI	GGYRCC	5 cut(s)	103, 421, 508, 562, 610
BbvI	GCAGC	2 cut(s)	316, 358
BccI	CCATC	3 cut(s)	167, 466, 622
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	512, 566
BisI	GCNGC	5 cut(s)	241, 305, 308, 347, 350
BlsI	GCNGC	5 cut(s)	242, 306, 309, 348, 351
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	5 cut(s)	105, 423, 510, 564, 612
BmrFI	CCNGG	1 cut(s)	513
BpuEI	CTTGAG	3 cut(s)	468, 522, 576
BpuMI	CCSGG	1 cut(s)	513
BsaHI	GRCGYC	2 cut(s)	296, 338
BsaJI	CCNNGG	2 cut(s)	263, 558
BsaXI	ACNNNNNCTCC	4 cut(s)	511, 541, 565, 595
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 230
Bse118I	RCCGGY	2 cut(s)	499, 553
BseDI	CCNNGG	2 cut(s)	263, 558
BseGI	GGATG	3 cut(s)	175, 207, 614
BseLI	CCNNNNNNNGG	2 cut(s)	229, 230
BseXI	GCAGC	2 cut(s)	316, 358
Bsh1236I	CGCG	1 cut(s)	226
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	89, 268, 557
BshNI	GGYRCC	5 cut(s)	103, 421, 508, 562, 610
BsiEI	CGRYCG	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	500, 513, 554
BslI	CCNNNNNNNGG	2 cut(s)	229, 230
BsmAI	GTCTC	2 cut(s)	512, 566
BsnI	GGCC	3 cut(s)	89, 268, 557
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	6 cut(s)	208, 224, 240, 243, 308, 350
BspANI	GGCC	3 cut(s)	89, 268, 557
BspFNI	CGCG	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	5 cut(s)	105, 423, 510, 564, 612
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	5 cut(s)	103, 421, 508, 562, 610
BsrFI	RCCGGY	2 cut(s)	499, 553
BssAI	RCCGGY	2 cut(s)	499, 553
BssECI	CCNNGG	2 cut(s)	263, 558
BssMI	GATC	1 cut(s)	213
BssNI	GRCGYC	2 cut(s)	296, 338
Bst6I	CTCTTC	3 cut(s)	26, 32, 378
BstACI	GRCGYC	2 cut(s)	296, 338
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	1 cut(s)	43
BstEII	GGTNACC	1 cut(s)	176
BstF5I	GGATG	3 cut(s)	175, 207, 614
BstFNI	CGCG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	2 cut(s)	512, 566
BstMBI	GATC	1 cut(s)	213
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	2 cut(s)	304, 346
BstNSI	RCATGY	1 cut(s)	124
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	511
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	316, 358
BsuRI	GGCC	3 cut(s)	89, 268, 557
BtsCI	GGATG	3 cut(s)	175, 207, 614
Cac8I	GCNNGC	1 cut(s)	501
CciI	TCATGA	1 cut(s)	189
Cfr10I	RCCGGY	2 cut(s)	499, 553
Cfr13I	GGNCC	1 cut(s)	412
CseI	GACGC	2 cut(s)	304, 346
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	2 cut(s)	121, 190
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eam1104I	CTCTTC	3 cut(s)	26, 32, 378
EarI	CTCTTC	3 cut(s)	26, 32, 378
EciI	GGCGGA	2 cut(s)	197, 258
Eco32I	GATATC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	401, 447
Eco91I	GGTNACC	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	412
EcoO65I	GGTNACC	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	162
FaeI	CATG	2 cut(s)	124, 193
FaiI	YATR	2 cut(s)	122, 191
FatI	CATG	2 cut(s)	120, 189
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	5 cut(s)	241, 305, 308, 347, 350
FokI	GGATG	3 cut(s)	182, 214, 601
Fsp4HI	GCNGC	5 cut(s)	241, 305, 308, 347, 350
GluI	GCNGC	5 cut(s)	241, 305, 308, 347, 350
HaeIII	GGCC	3 cut(s)	89, 268, 557
HapII	CCGG	3 cut(s)	500, 513, 554
HgaI	GACGC	2 cut(s)	304, 346
Hin1I	GRCGYC	2 cut(s)	296, 338
Hin1II	CATG	2 cut(s)	124, 193
HinfI	GANTC	4 cut(s)	271, 277, 283, 437
HpaII	CCGG	3 cut(s)	500, 513, 554
HphI	GGTGA	3 cut(s)	188, 471, 579
Hpy188I	TCNGA	2 cut(s)	276, 282
Hpy188III	TCNNGA	5 cut(s)	113, 190, 485, 539, 593
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	6 cut(s)	94, 240, 373, 425, 435, 453
HpyCH4IV	ACGT	2 cut(s)	495, 603
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	304, 346
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	2 cut(s)	495, 603
Hsp92I	GRCGYC	2 cut(s)	296, 338
Hsp92II	CATG	2 cut(s)	124, 193
KpnI	GGTACC	1 cut(s)	425
KroI	GCCGGC	1 cut(s)	499
KroNI	GCCGGC	1 cut(s)	501
Kzo9I	GATC	1 cut(s)	213
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	3 cut(s)	478, 532, 586
Lsp1109I	GCAGC	2 cut(s)	316, 358
MaeII	ACGT	2 cut(s)	495, 603
MaeIII	GTNAC	2 cut(s)	46, 176
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	4 cut(s)	13, 19, 395, 453
MluCI	AATT	2 cut(s)	12, 71
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	9 cut(s)	35, 258, 462, 487, 492, 546, 568, 595, 600
MroNI	GCCGGC	1 cut(s)	499
MseI	TTAA	1 cut(s)	622
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	3 cut(s)	500, 513, 554
MspR9I	CCNGG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	304, 346
NaeI	GCCGGC	1 cut(s)	501
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	1 cut(s)	213
NgoMIV	GCCGGC	1 cut(s)	499
NlaIII	CATG	2 cut(s)	124, 193
NlaIV	GGNNCC	5 cut(s)	105, 423, 510, 564, 612
NmeAIII	GCCGAG	2 cut(s)	288, 539
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	124
PagI	TCATGA	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	271, 277, 283
PkrI	GCNGC	5 cut(s)	242, 306, 309, 348, 351
Ple19I	CGATCG	1 cut(s)	216
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	412
Psp5II	RGGWCCY	1 cut(s)	412
PspEI	GGTNACC	1 cut(s)	176
PspN4I	GGNNCC	5 cut(s)	105, 423, 510, 564, 612
PspPI	GGNCC	1 cut(s)	412
PspPPI	RGGWCCY	1 cut(s)	412
PvuI	CGATCG	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	622
SatI	GCNGC	5 cut(s)	241, 305, 308, 347, 350
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	412
SmlI	CTYRAG	3 cut(s)	483, 537, 591
SmoI	CTYRAG	3 cut(s)	483, 537, 591
Sse9I	AATT	2 cut(s)	12, 71
SsiI	CCGC	6 cut(s)	208, 224, 240, 243, 308, 350
StyD4I	CCNGG	1 cut(s)	511
TaiI	ACGT	2 cut(s)	498, 606
TasI	AATT	2 cut(s)	12, 71
TauI	GCSGC	3 cut(s)	243, 310, 352
TfiI	GAWTC	3 cut(s)	271, 277, 283
Tru1I	TTAA	1 cut(s)	622
Tru9I	TTAA	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	304, 346
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	84, 144
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	2 cut(s)	12, 71
XceI	RCATGY	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.