Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002693

Physical Location & Seq

Genomic Coordinates Reverse (-)

84470511 .. 84476278

Gene Structure 5768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG621100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGATAATGGTCTTCAGAACTCTGTTCTTCCTCTTCTTTGCAATTTTCTTAGTTATTACAAAGGTTTCAGCTTATGAGTTTGAGAACGAAAATGCCAAGAAGCCGAAGGCATTGATTCATGGCAACGTGCAAACTCCACCACTTCCTCTAAACAAGGTTTACGATGACGAGAAAACTAATCTTCAGAATTTTATCGACTGGATCTGGAACATCCTCCCTAAACCTAAGCCGGAGACGCCGCCAAATCCGACCCCGAAAGTGCCGCAAAATCCGATGCCAAATGTGCCACCACCTTCAAAAAAGGCACCCCCACCACCACCGGAGAAAGAAGGAGAAGATGTTGGTAAAACAATCAAGCCCGCCCCCTACCATCAAGACTTCCAGTCGCCACCCAATTTTACACCATTAAGGCCCCGAACTATATCTTTAAATGATTGCATGAGTGCAGCATGCAGAAACCGTCCAAGGGAACATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.12

Weight (kDa)

9.27

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g50220 FvH4_6g50240 FvH4_6g50250 FvH4_6g50900
rosa_chinensis	RchiOBHm_Chr2g0170461 RchiOBHm_Chr2g0170501 RchiOBHm_Chr2g0170511 RchiOBHm_Chr3g0464021
rosa_laevigata	RLG00000018108 RLG00000019049 RLG00000021959 RLG00000021962 RLG00000021963
rosa_multiflora	Rmu_sc0001705.1_g000024
rosa_roxburghii	Rroxscaffold_2G00081230 Rroxscaffold_2G00081250
rosa_rugosa	Rorug02G0549000 Rorug02G0549100 Rorug02G0549200 Rorug02G0549700 Rorug06G0139600
rosa_samantha	Rh2AG621100 Rh2AG621300 Rh2AG621400 Rh2BG632500 Rh2BG632800 Rh2BG639700 Rh2CG601800 Rh2CG602000 Rh2CG602100 Rh2DG645200 Rh2DG645600 Rh2DG650500 Rh3BG131200 Rh6BG254600 Rh6CG254200
rosa_wichuraiana	Rw2G051490 Rw2G051500 Rw2G051520 Rw2G052110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AciI	CCGC	3 cut(s)	239, 263, 360
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	466
AgsI	TTSAA	1 cut(s)	297
AhdI	GACNNNNNGTC	1 cut(s)	382
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	227
BisI	GCNGC	3 cut(s)	239, 263, 447
BlsI	GCNGC	3 cut(s)	240, 264, 448
BmeRI	GACNNNNNGTC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	2 cut(s)	306, 413
BmsI	GCATC	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	4
Bpu10I	CCTNAGC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	464
BsaWI	WCCGGW	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	2 cut(s)	203, 382
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseNI	ACTGG	2 cut(s)	203, 382
BseXI	GCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	304
BsiSI	CCGG	2 cut(s)	230, 320
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	412
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	3 cut(s)	239, 263, 360
BspANI	GGCC	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	306, 413
BspPI	GGATC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	203, 382
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	1 cut(s)	201
BssNI	GRCGYC	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	360, 451
BstDEI	CTNAG	2 cut(s)	49, 225
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 283
BstNSI	RCATGY	2 cut(s)	453, 476
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	360, 451
Cfr13I	GGNCC	1 cut(s)	411
CseI	GACGC	1 cut(s)	244
CviAII	CATG	5 cut(s)	119, 439, 450, 473, 477
CviJI	RGCY	5 cut(s)	71, 103, 229, 358, 412
CviKI_1	RGCY	5 cut(s)	71, 103, 229, 358, 412
DdeI	CTNAG	2 cut(s)	49, 225
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
DraI	TTTAAA	1 cut(s)	429
DriI	GACNNNNNGTC	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	464
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	5 cut(s)	122, 442, 453, 476, 480
FaiI	YATR	7 cut(s)	75, 120, 422, 440, 451, 474, 478
FatI	CATG	5 cut(s)	118, 438, 449, 472, 476
FauI	CCCGC	1 cut(s)	367
Fnu4HI	GCNGC	3 cut(s)	239, 263, 447
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	239, 263, 447
GluI	GCNGC	3 cut(s)	239, 263, 447
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	2 cut(s)	230, 320
HgaI	GACGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	5 cut(s)	122, 442, 453, 476, 480
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	2 cut(s)	230, 320
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	17, 186, 249, 273
Hpy188III	TCNNGA	2 cut(s)	205, 374
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	3 cut(s)	100, 303, 323
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	6 cut(s)	41, 130, 438, 446, 453, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 283
HpyF3I	CTNAG	2 cut(s)	49, 225
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	5 cut(s)	122, 442, 453, 476, 480
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	5 cut(s)	184, 190, 243, 333, 395
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	1 cut(s)	264
MaeII	ACGT	1 cut(s)	126
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	5 cut(s)	4, 19, 25, 173, 347
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	3 cut(s)	42, 187, 394
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	3 cut(s)	41, 156, 224
Mph1103I	ATGCAT	1 cut(s)	478
MseI	TTAA	2 cut(s)	407, 428
MspI	CCGG	2 cut(s)	230, 320
MwoI	GCNNNNNNNGC	2 cut(s)	235, 283
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	5 cut(s)	122, 442, 453, 476, 480
NlaIV	GGNNCC	2 cut(s)	306, 413
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	2 cut(s)	453, 476
PaeI	GCATGC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	240, 264, 448
PspN4I	GGNNCC	2 cut(s)	306, 413
PspPI	GGNCC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	407, 428
SatI	GCNGC	3 cut(s)	239, 263, 447
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	411
SetI	ASST	6 cut(s)	66, 73, 129, 159, 226, 295
SfaNI	GCATC	1 cut(s)	264
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	3 cut(s)	42, 187, 394
SsiI	CCGC	3 cut(s)	239, 263, 360
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	195
TasI	AATT	3 cut(s)	42, 187, 394
TauI	GCSGC	2 cut(s)	241, 265
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	407, 428
Tru9I	TTAA	2 cut(s)	407, 428
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	107
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	2 cut(s)	453, 476
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.