Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002693

Physical Location & Seq

Genomic Coordinates Forward (+)

45553777 .. 45554716

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTCTTCAAAATTCTACTCTTCCTCTTCTTCACCATTCTCTTAGTTACTACAAAGGTTTTAGCTGATGAGTTTGAGAATAAAAATGCCAAGAAGCCGAAGGCACCAACTCCCGGCGACGTGCAAACTCTACCACTTTCAATAAACAAGGTTTACGATGACCAGAAAATTAATCTTATGAAAATTTATTACTGGATCCCGAGGATCTTTCCTAAGCCAAAGCCGAATACGCCGCCGAATGCAACACCGAAGGTGCCGCCACCTTTAGAAAAGGCACCACCACTACTGGAGGAAGACGAAGACGACGTTGGTGAGACACCAGGTCCCCCAACTCAAGATCACAACTTATGGGTTCCAACCCCTTCTGTGGACGCACCCCCTCCTTCACCTCTGACAAACGCACCCACTAATGTTCCAACAATCAAGCCCGGCCATGAAATTTCGCAGCCACGGTCACCCAATTTTGTAAGACCAAAGAGCCCAATTACATCTAAAATTGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.65

Weight (kDa)

9.05

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g50220 FvH4_6g50240 FvH4_6g50250 FvH4_6g50900
rosa_chinensis	RchiOBHm_Chr2g0170461 RchiOBHm_Chr2g0170501 RchiOBHm_Chr2g0170511 RchiOBHm_Chr3g0464021
rosa_laevigata	RLG00000018108 RLG00000019049 RLG00000021959 RLG00000021962 RLG00000021963
rosa_multiflora	Rmu_sc0001705.1_g000024
rosa_roxburghii	Rroxscaffold_2G00081230 Rroxscaffold_2G00081250
rosa_rugosa	Rorug02G0549000 Rorug02G0549100 Rorug02G0549200 Rorug02G0549700 Rorug06G0139600
rosa_samantha	Rh2AG621100 Rh2AG621300 Rh2AG621400 Rh2BG632500 Rh2BG632800 Rh2BG639700 Rh2CG601800 Rh2CG602000 Rh2CG602100 Rh2DG645200 Rh2DG645600 Rh2DG650500 Rh3BG131200 Rh6BG254600 Rh6CG254200
rosa_wichuraiana	Rw2G051490 Rw2G051500 Rw2G051520 Rw2G052110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	103, 253, 274
AciI	CCGC	2 cut(s)	233, 257
AclWI	GGATC	3 cut(s)	190, 203, 212
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	3 cut(s)	12, 183, 438
AfiI	CCNNNNNNNGG	2 cut(s)	113, 367
AgsI	TTSAA	2 cut(s)	10, 141
AhdI	GACNNNNNGTC	1 cut(s)	321
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	3 cut(s)	190, 203, 212
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	3 cut(s)	12, 183, 438
AseI	ATTAAT	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	2 cut(s)	114, 429
AsuHPI	GGTGA	4 cut(s)	25, 323, 378, 447
AvaI	CYCGRG	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	195
BanI	GGYRCC	3 cut(s)	103, 253, 274
BanII	GRGCYC	1 cut(s)	482
BbsI	GAAGAC	2 cut(s)	300, 306
BbvI	GCAGC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	321
BcnI	CCSGG	2 cut(s)	114, 429
BcoDI	GTCTC	1 cut(s)	308
BisI	GCNGC	3 cut(s)	233, 257, 446
BlsI	GCNGC	3 cut(s)	234, 258, 447
Bme1390I	CCNGG	3 cut(s)	114, 321, 429
Bme18I	GGWCC	1 cut(s)	323
BmeRI	GACNNNNNGTC	1 cut(s)	321
BmeT110I	CYCGRG	1 cut(s)	199
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	6 cut(s)	105, 197, 255, 276, 325, 354
BmrFI	CCNGG	3 cut(s)	114, 321, 429
BpiI	GAAGAC	2 cut(s)	300, 306
BpmI	CTGGAG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	318
BpuMI	CCSGG	2 cut(s)	114, 429
BsaJI	CCNNGG	2 cut(s)	200, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 367
Bse1I	ACTGG	2 cut(s)	197, 291
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	200, 449
BseLI	CCNNNNNNNGG	2 cut(s)	113, 367
BseNI	ACTGG	2 cut(s)	197, 291
BseXI	GCAGC	1 cut(s)	457
BshFI	GGCC	1 cut(s)	432
BshNI	GGYRCC	3 cut(s)	103, 253, 274
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	114, 429
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	113, 367
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	432
BsoBI	CYCGRG	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	3 cut(s)	195, 204, 337
BspACI	CCGC	2 cut(s)	233, 257
BspANI	GGCC	1 cut(s)	432
BspLI	GGNNCC	6 cut(s)	105, 197, 255, 276, 325, 354
BspPI	GGATC	3 cut(s)	190, 203, 212
BspT107I	GGYRCC	3 cut(s)	103, 253, 274
BsrI	ACTGG	2 cut(s)	197, 291
BssECI	CCNNGG	2 cut(s)	200, 449
BssMI	GATC	3 cut(s)	195, 204, 337
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	2 cut(s)	26, 32
BstDEI	CTNAG	2 cut(s)	43, 213
BstDSI	CCRYGG	1 cut(s)	449
BstEII	GGTNACC	1 cut(s)	453
BstKTI	GATC	3 cut(s)	198, 207, 340
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	3 cut(s)	195, 204, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNI	CCWGG	1 cut(s)	321
BstPI	GGTNACC	1 cut(s)	453
BstSCI	CCNGG	3 cut(s)	112, 319, 427
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	2 cut(s)	300, 306
BstX2I	RGATCY	2 cut(s)	195, 204
BstYI	RGATCY	2 cut(s)	195, 204
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	449
BtrI	CACGTC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	323
CseI	GACGC	1 cut(s)	380
CsiI	ACCWGGT	1 cut(s)	319
CviAII	CATG	1 cut(s)	434
CviJI	RGCY	8 cut(s)	65, 97, 217, 223, 427, 432, 448, 480
CviKI_1	RGCY	8 cut(s)	65, 97, 217, 223, 427, 432, 448, 480
DdeI	CTNAG	2 cut(s)	43, 213
DpnI	GATC	3 cut(s)	197, 206, 339
DpnII	GATC	3 cut(s)	195, 204, 337
DriI	GACNNNNNGTC	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	26, 32
Eam1105I	GACNNNNNGTC	1 cut(s)	321
EarI	CTCTTC	2 cut(s)	26, 32
Eco24I	GRGCYC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	199
Eco91I	GGTNACC	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	482
FaeI	CATG	1 cut(s)	437
FaiI	YATR	3 cut(s)	179, 349, 435
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	1 cut(s)	433
Fnu4HI	GCNGC	3 cut(s)	233, 257, 446
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	3 cut(s)	233, 257, 446
GluI	GCNGC	3 cut(s)	233, 257, 446
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	2 cut(s)	114, 429
HgaI	GACGC	1 cut(s)	380
Hin1II	CATG	1 cut(s)	437
HpaII	CCGG	2 cut(s)	114, 429
HphI	GGTGA	4 cut(s)	25, 323, 378, 447
Hpy166II	GTNNAC	2 cut(s)	154, 370
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	2 cut(s)	199, 335
Hpy8I	GTNNAC	2 cut(s)	154, 370
Hpy99I	CGWCG	2 cut(s)	122, 308
HpyAV	CCTTC	4 cut(s)	94, 244, 372, 393
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	2 cut(s)	120, 306
HpyCH4V	TGCA	2 cut(s)	124, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	2 cut(s)	43, 213
HpySE526I	ACGT	2 cut(s)	120, 306
Hsp92II	CATG	1 cut(s)	437
Kzo9I	GATC	3 cut(s)	195, 204, 337
LpnPI	CCDG	7 cut(s)	127, 176, 178, 272, 306, 333, 442
Lsp1109I	GCAGC	1 cut(s)	457
MabI	ACCWGGT	1 cut(s)	319
MaeII	ACGT	2 cut(s)	120, 306
MaeIII	GTNAC	2 cut(s)	46, 453
MalI	GATC	3 cut(s)	197, 206, 339
MboI	GATC	3 cut(s)	195, 204, 337
MboII	GAAGA	5 cut(s)	13, 19, 22, 305, 311
MflI	RGATCY	2 cut(s)	195, 204
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	7 cut(s)	12, 168, 183, 438, 460, 483, 495
MmeI	TCCRAC	2 cut(s)	380, 440
MnlI	CCTC	5 cut(s)	35, 195, 283, 390, 399
MseI	TTAA	1 cut(s)	171
MspI	CCGG	2 cut(s)	114, 429
MspR9I	CCNGG	3 cut(s)	114, 321, 429
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	229
NciI	CCSGG	2 cut(s)	114, 429
NdeII	GATC	3 cut(s)	195, 204, 337
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	6 cut(s)	105, 197, 255, 276, 325, 354
NmuCI	GTSAC	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	234, 258, 447
PpuMI	RGGWCCY	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	319
PspEI	GGTNACC	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	6 cut(s)	105, 197, 255, 276, 325, 354
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
PsuI	RGATCY	2 cut(s)	195, 204
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	233, 257, 446
Sau3AI	GATC	3 cut(s)	195, 204, 337
Sau96I	GGNCC	1 cut(s)	323
ScrFI	CCNGG	3 cut(s)	114, 321, 429
SduI	GDGCHC	1 cut(s)	482
SetI	ASST	9 cut(s)	60, 67, 123, 153, 255, 265, 309, 325, 391
SexAI	ACCWGGT	1 cut(s)	319
SinI	GGWCC	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	7 cut(s)	12, 168, 183, 438, 460, 483, 495
SsiI	CCGC	2 cut(s)	233, 257
StyD4I	CCNGG	3 cut(s)	112, 319, 427
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	2 cut(s)	123, 309
TasI	AATT	7 cut(s)	12, 168, 183, 438, 460, 483, 495
TauI	GCSGC	2 cut(s)	235, 259
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	453
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	453
TspDTI	ATGAA	2 cut(s)	194, 450
VpaK11BI	GGWCC	1 cut(s)	323
VspI	ATTAAT	1 cut(s)	171
XapI	RAATTY	3 cut(s)	12, 183, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.