Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002693

Physical Location & Seq

Genomic Coordinates Reverse (-)

79531064 .. 79531627

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTGGCGGCGAAGGCGGTGGTGGTAGAGGCGGTGATGGTGGCGGAGGCGGCAGTGGTGGAGGCGGCGGTGGTGGTGGAGGAGGTGGCGGGGGAGGCGGTGGAGGTGGTGGCGGCAGTGGCGGGGGGGGACAGCAATGGTGGCGATAGCGGATCCAAACCCCCAAACAAGAATAATGCACCAACACCCCCTGAGCGCCGGTGCACGTGCCCTTCTAGTGGGAAGGATCCCGCTCTACCATCTCCAATCAAACCCTCGACTCCACCAGCTCAAGGGCGGTCACCACCTTTGCCACCTCTGAAAAAGACACCACCATCGCCCCCACCTTCAAAAAAGGCACCACCACCTCCGCCACCACCACCGGAGGAAGACAAAGATGGCAATGGTGAGATACCAGCTCCCGCACCTCAAGATAACAACTTATTGGCTCCATTCCATTCTGCGGACGCACCCTCTCCTTCACCTCTAGCAAATGCACCCACTCCTGTTCCAGCAAACAAGCTTGGTCCCCTTATTTTCAAGCCACTGCAACCCAGTTTCGCACCACCACCTAGCTACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

18.76

Weight (kDa)

5.2

Isoelectric Point (pI)

86.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g50220 FvH4_6g50240 FvH4_6g50250 FvH4_6g50900
rosa_chinensis	RchiOBHm_Chr2g0170461 RchiOBHm_Chr2g0170501 RchiOBHm_Chr2g0170511 RchiOBHm_Chr3g0464021
rosa_laevigata	RLG00000018108 RLG00000019049 RLG00000021959 RLG00000021962 RLG00000021963
rosa_multiflora	Rmu_sc0001705.1_g000024
rosa_roxburghii	Rroxscaffold_2G00081230 Rroxscaffold_2G00081250
rosa_rugosa	Rorug02G0549000 Rorug02G0549100 Rorug02G0549200 Rorug02G0549700 Rorug06G0139600
rosa_samantha	Rh2AG621100 Rh2AG621300 Rh2AG621400 Rh2BG632500 Rh2BG632800 Rh2BG639700 Rh2CG601800 Rh2CG602000 Rh2CG602100 Rh2DG645200 Rh2DG645600 Rh2DG650500 Rh3BG131200 Rh6BG254600 Rh6CG254200
rosa_wichuraiana	Rw2G051490 Rw2G051500 Rw2G051520 Rw2G052110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AccBSI	CCGCTC	1 cut(s)	233
AclWI	GGATC	4 cut(s)	147, 160, 221, 234
AcvI	CACGTG	1 cut(s)	207
AfiI	CCNNNNNNNGG	3 cut(s)	218, 272, 442
AgsI	TTSAA	2 cut(s)	330, 520
AluBI	AGCT	4 cut(s)	269, 398, 502, 555
AluI	AGCT	4 cut(s)	269, 398, 502, 555
Alw21I	GWGCWC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	202
AlwI	GGATC	4 cut(s)	147, 160, 221, 234
ApaLI	GTGCAC	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	4 cut(s)	46, 273, 398, 453
AvaII	GGWCC	1 cut(s)	506
BaeGI	GKGCMC	2 cut(s)	206, 212
BamHI	GGATCC	2 cut(s)	152, 226
BanI	GGYRCC	1 cut(s)	337
BbrPI	CACGTG	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	206
BccI	CCATC	4 cut(s)	31, 247, 322, 371
BfaI	CTAG	3 cut(s)	216, 467, 552
BfoI	RGCGCY	1 cut(s)	199
BisI	GCNGC	4 cut(s)	9, 51, 66, 114
BlsI	GCNGC	4 cut(s)	10, 52, 67, 115
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	5 cut(s)	154, 228, 339, 429, 508
BmrI	ACTGGG	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	255, 393
BsaAI	YACGTR	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 272, 442
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	534
Bse3DI	GCAATG	2 cut(s)	142, 388
BseLI	CCNNNNNNNGG	3 cut(s)	218, 272, 442
BseMI	GCAATG	2 cut(s)	142, 388
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	2 cut(s)	206, 212
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	199, 362
BslFI	GGGAC	2 cut(s)	143, 492
BslI	CCNNNNNNNGG	3 cut(s)	218, 272, 442
BsmFI	GGGAC	2 cut(s)	143, 492
Bsp1286I	GDGCHC	2 cut(s)	206, 212
Bsp143I	GATC	2 cut(s)	152, 226
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	5 cut(s)	154, 228, 339, 429, 508
BspPI	GGATC	4 cut(s)	147, 160, 221, 234
BspT107I	GGYRCC	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	142, 388
BsrFI	RCCGGY	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	198
BssMI	GATC	2 cut(s)	152, 226
BstBAI	YACGTR	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	192
BstEII	GGTNACC	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	2 cut(s)	155, 229
BstMBI	GATC	2 cut(s)	152, 226
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 50, 95, 119, 141
BstPI	GGTNACC	1 cut(s)	279
BstSLI	GKGCMC	2 cut(s)	206, 212
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	2 cut(s)	152, 226
BstYI	RGATCY	2 cut(s)	152, 226
BtgZI	GCGATG	1 cut(s)	300
BtsI	GCAGTG	3 cut(s)	60, 123, 524
BtsIMutI	CAGTG	3 cut(s)	60, 123, 524
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	506
CseI	GACGC	1 cut(s)	455
CviJI	RGCY	6 cut(s)	269, 398, 428, 502, 523, 555
CviKI_1	RGCY	6 cut(s)	269, 398, 428, 502, 523, 555
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	154, 228
DpnII	GATC	2 cut(s)	152, 226
EciI	GGCGGA	2 cut(s)	59, 339
Eco47I	GGWCC	1 cut(s)	506
Eco72I	CACGTG	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	279
EcoO65I	GGTNACC	1 cut(s)	279
FaqI	GGGAC	2 cut(s)	143, 492
FauI	CCCGC	4 cut(s)	82, 115, 238, 409
Fnu4HI	GCNGC	4 cut(s)	9, 51, 66, 114
Fsp4HI	GCNGC	4 cut(s)	9, 51, 66, 114
FspBI	CTAG	3 cut(s)	216, 467, 552
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	4 cut(s)	9, 51, 66, 114
HaeII	RGCGCY	1 cut(s)	199
HapII	CCGG	2 cut(s)	199, 362
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	2 cut(s)	199, 362
HphI	GGTGA	4 cut(s)	46, 273, 398, 453
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	300, 563
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	5 cut(s)	7, 217, 222, 336, 468
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	179, 204, 476, 529
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 50, 95, 119, 141
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	206
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	152, 226
LmnI	GCTCC	2 cut(s)	403, 433
LpnPI	CCDG	8 cut(s)	204, 212, 279, 375, 408, 498, 504, 547
MaeI	CTAG	3 cut(s)	216, 467, 552
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	2 cut(s)	154, 228
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	2 cut(s)	152, 226
MboII	GAAGA	1 cut(s)	380
MflI	RGATCY	2 cut(s)	152, 226
MhlI	GDGCHC	2 cut(s)	206, 212
MlyI	GAGTC	1 cut(s)	253
MspI	CCGG	2 cut(s)	199, 362
MwoI	GCNNNNNNNGC	5 cut(s)	14, 50, 95, 119, 141
NdeII	GATC	2 cut(s)	152, 226
NlaIV	GGNNCC	5 cut(s)	154, 228, 339, 429, 508
NmuCI	GTSAC	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	10, 52, 67, 115
PleI	GAGTC	1 cut(s)	253
PmaCI	CACGTG	1 cut(s)	207
PmlI	CACGTG	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	253
Ppu21I	YACGTR	1 cut(s)	207
PspCI	CACGTG	1 cut(s)	207
PspEI	GGTNACC	1 cut(s)	279
PspN4I	GGNNCC	5 cut(s)	154, 228, 339, 429, 508
PspPI	GGNCC	1 cut(s)	506
PsuI	RGATCY	2 cut(s)	152, 226
SatI	GCNGC	4 cut(s)	9, 51, 66, 114
Sau3AI	GATC	2 cut(s)	152, 226
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	253
SduI	GDGCHC	2 cut(s)	206, 212
SgrAI	CRCCGGYG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	270, 408
SmoI	CTYRAG	2 cut(s)	270, 408
SspMI	CTAG	3 cut(s)	216, 467, 552
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	257
TauI	GCSGC	4 cut(s)	11, 53, 68, 116
TscAI	CASTG	3 cut(s)	60, 123, 531
TseFI	GTSAC	1 cut(s)	279
Tsp45I	GTSAC	1 cut(s)	279
TspRI	CASTG	3 cut(s)	60, 123, 531
VneI	GTGCAC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	506
XspI	CTAG	3 cut(s)	216, 467, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.