Prupe.8G181900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013304
Physical Location & Seq
Forward (+)
18174631 .. 18176863
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G181900.1

Sequence Viewer

Length: 594 bp
ATGGAAGACTACATGAGAGGCTGTACGAGGAAGCTGGCGCTCTGGTACACGCGGACGTTCAAGCCCATTATGACCCACGACGAGCTCGAGCCCATCATGGCCACCTTCGGCTTCGTCGGCCTGCCACCGGCGGCCTCCGCCAAGGAGTACGTCTTCTCCGCCGCTGTCGGCCGCCGGAACAAGTGGGTCCGGGCGGTGGAACCGCCGTTTCCGAGGCCGAGGCTGCCGTACCCGAGAATCGACGGGCTTCATATTTACACGTATCGGGCGTTTATCGACGCCGTTAACTTTTACCTTGAGATGTGTAACATTTCCGATCTCTTCCATGTAAGAGGTATGCCGCTCCATGATCTCAGTCGAATTAGTGACAGAAACCGAAAGTGGCGGAAAATGGAAGAAGATGACAGTGTGTTTGTTTACAGAGAAGGAACACTGGATCAAGCTACATTCAATCTTTATCACCCTGCTAGTAAGAGCATCAGCAACAATCCCAATAGCAGCGGCAGCGGCGGTCACAATTCGATCCTTATTCGGGATAAGGGAAGCAATACCCCTGCCAGCTGCATTGTTCCTTTGAAAGATATCATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.56

Weight (kDa)

9.15

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38213
fragaria_vesca FvH4_2g17020
malus_domestica MD05G1143100.v1.1 MD10G1142900.v1.1
prunus_persica Prupe.8G181900_v2.0.a1
pyrus_communis pycom05g13760 pycom10g12280
rosa_chinensis RchiOBHm_Chr6g0281201
rosa_laevigata RLG00000012986
rosa_multiflora Rmu_co8459503.1_g000001 Rmu_sc0001705.1_g000026
rosa_roxburghii Rroxscaffold_7G00187230
rosa_rugosa Rorug06G0139600
rosa_samantha Rh6AG251500 Rh6BG254700 Rh6CG254300 Rh6DG246100
rosa_wichuraiana Rw6G021840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 343
AccII CGCG 1 cut(s) 52
AclWI GGATC 2 cut(s) 444, 517
AcoI YGGCCR 2 cut(s) 99, 169
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 4 cut(s) 25, 47, 149, 230
AfiI CCNNNNNNNGG 3 cut(s) 127, 196, 532
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 3 cut(s) 61, 451, 577
AluBI AGCT 4 cut(s) 34, 85, 443, 561
AluI AGCT 4 cut(s) 34, 85, 443, 561
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 2 cut(s) 444, 517
Ama87I CYCGRG 2 cut(s) 86, 232
AoxI GGCC 5 cut(s) 99, 118, 132, 169, 215
ApeKI GCWGC 4 cut(s) 223, 498, 504, 561
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 452
AvaI CYCGRG 2 cut(s) 86, 232
AvaII GGWCC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 101
BanII GRGCYC 2 cut(s) 87, 93
BbsI GAAGAC 2 cut(s) 12, 145
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 210, 510, 516, 548
BccI CCATC 1 cut(s) 101
BceAI ACGGC 3 cut(s) 190, 211, 266
BcnI CCSGG 1 cut(s) 191
BfaI CTAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 2 cut(s) 86, 232
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 188, 201
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 486
BpiI GAAGAC 2 cut(s) 12, 145
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 3 cut(s) 141, 212, 218
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 196, 532
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 438
BseDI CCNNGG 3 cut(s) 141, 212, 218
BseLI CCNNNNNNNGG 3 cut(s) 127, 196, 532
BseMII CTCAG 1 cut(s) 367
BseNI ACTGG 1 cut(s) 438
BseX3I CGGCCG 1 cut(s) 169
BseXI GCAGC 4 cut(s) 210, 510, 516, 548
Bsh1236I CGCG 1 cut(s) 52
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 5 cut(s) 101, 120, 134, 171, 217
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 2 cut(s) 86, 232
BsiSI CCGG 3 cut(s) 128, 175, 190
BslI CCNNNNNNNGG 3 cut(s) 127, 196, 532
BsnI GGCC 5 cut(s) 101, 120, 134, 171, 217
BsoBI CYCGRG 2 cut(s) 86, 232
Bsp1286I GDGCHC 2 cut(s) 87, 93
Bsp143I GATC 4 cut(s) 316, 349, 436, 522
BspANI GGCC 5 cut(s) 101, 120, 134, 171, 217
BspCNI CTCAG 1 cut(s) 366
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 188, 201
BspPI GGATC 2 cut(s) 444, 517
BsrBI CCGCTC 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 1 cut(s) 438
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 3 cut(s) 141, 212, 218
BssMI GATC 4 cut(s) 316, 349, 436, 522
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 261
BstC8I GCNNGC 3 cut(s) 36, 122, 559
BstDEI CTNAG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 4 cut(s) 319, 352, 439, 525
BstMBI GATC 4 cut(s) 316, 349, 436, 522
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 5 cut(s) 117, 137, 223, 504, 507
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 4 cut(s) 210, 510, 516, 548
BstV2I GAAGAC 2 cut(s) 12, 145
BstZI CGGCCG 1 cut(s) 169
BsuRI GGCC 5 cut(s) 101, 120, 134, 171, 217
BtsIMutI CAGTG 2 cut(s) 412, 431
Cac8I GCNNGC 3 cut(s) 36, 122, 559
CfoI GCGC 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 1 cut(s) 287
Csp6I GTAC 4 cut(s) 24, 46, 148, 229
CviAII CATG 4 cut(s) 13, 97, 326, 347
CviQI GTAC 4 cut(s) 24, 46, 148, 229
DdeI CTNAG 1 cut(s) 353
DpnI GATC 4 cut(s) 318, 351, 438, 524
DpnII GATC 4 cut(s) 316, 349, 436, 522
EaeI YGGCCR 2 cut(s) 99, 169
EagI CGGCCG 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
EciI GGCGGA 3 cut(s) 127, 148, 400
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 87, 93
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 85
Eco88I CYCGRG 2 cut(s) 86, 232
EcoICRI GAGCTC 1 cut(s) 85
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 87, 93
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 4 cut(s) 16, 100, 329, 350
FaiI YATR 9 cut(s) 14, 71, 98, 252, 327, 338, 348, 587, 592
FatI CATG 4 cut(s) 12, 96, 325, 346
FriOI GRGCYC 2 cut(s) 87, 93
FspBI CTAG 1 cut(s) 468
GlaI GCGC 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 5 cut(s) 101, 120, 134, 171, 217
HapII CCGG 3 cut(s) 128, 175, 190
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 4 cut(s) 16, 100, 329, 350
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 1 cut(s) 237
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 3 cut(s) 128, 175, 190
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 3 cut(s) 48, 286, 418
Hpy188I TCNGA 2 cut(s) 213, 316
Hpy188III TCNNGA 1 cut(s) 533
Hpy8I GTNNAC 3 cut(s) 48, 286, 418
Hpy99I CGWCG 4 cut(s) 83, 119, 245, 281
HpyAV CCTTC 2 cut(s) 115, 419
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 3 cut(s) 56, 150, 260
HpyCH4V TGCA 1 cut(s) 564
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 137, 223, 504, 507
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 3 cut(s) 56, 150, 260
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 4 cut(s) 16, 100, 329, 350
HspAI GCGC 1 cut(s) 38
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 4 cut(s) 316, 349, 436, 522
LmnI GCTCC 1 cut(s) 348
Lsp1109I GCAGC 4 cut(s) 210, 510, 516, 548
LweI GCATC 1 cut(s) 486
MaeI CTAG 1 cut(s) 468
MaeII ACGT 3 cut(s) 56, 150, 260
MaeIII GTNAC 3 cut(s) 305, 365, 512
MalI GATC 4 cut(s) 318, 351, 438, 524
MbiI CCGCTC 1 cut(s) 343
MboI GATC 4 cut(s) 316, 349, 436, 522
MboII GAAGA 5 cut(s) 17, 145, 313, 407, 410
MhlI GDGCHC 2 cut(s) 87, 93
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 2 cut(s) 360, 517
MluNI TGGCCA 1 cut(s) 101
MnlI CCTC 6 cut(s) 11, 21, 145, 207, 213, 326
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MseI TTAA 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 101
MspA1I CMGCKG 4 cut(s) 164, 501, 507, 561
MspI CCGG 3 cut(s) 128, 175, 190
MspR9I CCNGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 5 cut(s) 117, 137, 223, 504, 507
NciI CCSGG 1 cut(s) 191
NdeII GATC 4 cut(s) 316, 349, 436, 522
NlaIII CATG 4 cut(s) 16, 100, 329, 350
NlaIV GGNNCC 2 cut(s) 188, 201
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 2 cut(s) 365, 512
PaeR7I CTCGAG 1 cut(s) 86
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 266
PfeI GAWTC 1 cut(s) 237
Ppu21I YACGTR 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 188, 201
PspPI GGNCC 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 561
RsaI GTAC 4 cut(s) 25, 47, 149, 230
RsaNI GTAC 4 cut(s) 24, 46, 148, 229
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 4 cut(s) 316, 349, 436, 522
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 2 cut(s) 87, 93
SfaNI GCATC 1 cut(s) 486
Sfr274I CTCGAG 1 cut(s) 86
SgrAI CRCCGGYG 1 cut(s) 127
SinI GGWCC 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 86, 296
SmoI CTYRAG 2 cut(s) 86, 296
Sse9I AATT 2 cut(s) 360, 517
SspMI CTAG 1 cut(s) 468
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 3 cut(s) 59, 153, 263
TaqI TCGA 5 cut(s) 87, 240, 276, 358, 521
TasI AATT 2 cut(s) 360, 517
TauI GCSGC 6 cut(s) 134, 164, 174, 343, 504, 510
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 2 cut(s) 412, 438
TseFI GTSAC 2 cut(s) 365, 512
TseI GCWGC 4 cut(s) 223, 498, 504, 561
Tsp45I GTSAC 2 cut(s) 365, 512
TspDTI ATGAA 1 cut(s) 239
TspRI CASTG 2 cut(s) 412, 438
VpaK11BI GGWCC 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 86
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.