Rh6AG251500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013304
Physical Location & Seq
Forward (+)
44049092 .. 44052515
3424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG251500.1

Sequence Viewer

Length: 624 bp
ATGGCGGAGGACTACATGAAGGGCTCTATGCGCAAGCTGGCCCTCTGGTACACCCGGACCTTCAAACCCATTATGACTCACGACGAGCTCGAGCCCATCATGGCCACCTTGGGCTTCGTATCCCGGCCGCCGGCGGCGGCCTCGCCGAACTCGGCTGTCATGTGGAAGGAGTACGTGTTCTCCGCCGCCGGAGGGTGGAGGAGCAAGTGGGGTGCCGCGAACGAGCCGCAGCTGCTGCCGAGGCCGAGGCTACCCTACCCGAGAATCGATGGGCTCCACATCTACTCCTACCGGGCTTTCCTCGAGGCCGTTAATTTCTACCTCGAGATGTGTGACATCTCCGATCTCTTCCATATAAGAGGAATGCCACTCCATGATCTCCATCGAATTAAAGACCGAAACAGGAAGTGGCGAAAAATGGAAGAAGATGACAGTGTGTTTGTTTACAGAGAAGGAACTTTGGATCAAGCAACATTCAATCTGTATCACTCTCCCAAGACCATCAGCAATAACGCCCATAATAACAGCAATGGCGGTGGCGACCACAATTCAATCGTTATTCGGGAGAAAGGCAATAATACCCCAACCAGCTGCATTGTACCTTTGAAAGATATCATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.79

Weight (kDa)

8.82

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38213
fragaria_vesca FvH4_2g17020
malus_domestica MD05G1143100.v1.1 MD10G1142900.v1.1
prunus_persica Prupe.8G181900_v2.0.a1
pyrus_communis pycom05g13760 pycom10g12280
rosa_chinensis RchiOBHm_Chr6g0281201
rosa_laevigata RLG00000012986
rosa_multiflora Rmu_co8459503.1_g000001 Rmu_sc0001705.1_g000026
rosa_roxburghii Rroxscaffold_7G00187230
rosa_rugosa Rorug06G0139600
rosa_samantha Rh6AG251500 Rh6BG254700 Rh6CG254300 Rh6DG246100
rosa_wichuraiana Rw6G021840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 302
Acc16I TGCGCA 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 212
AccII CGCG 1 cut(s) 218
AciI CCGC 9 cut(s) 5, 128, 134, 137, 183, 186, 216, 227, 534
AclWI GGATC 1 cut(s) 471
AcoI YGGCCR 2 cut(s) 102, 125
AfaI GTAC 3 cut(s) 50, 173, 600
AfiI CCNNNNNNNGG 3 cut(s) 130, 192, 195
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 4 cut(s) 64, 478, 552, 607
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 4 cut(s) 37, 88, 232, 591
AluI AGCT 4 cut(s) 37, 88, 232, 591
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 1 cut(s) 471
AlwNI CAGNNNCTG 1 cut(s) 235
Ama87I CYCGRG 4 cut(s) 89, 259, 302, 323
AoxI GGCC 6 cut(s) 39, 102, 125, 138, 242, 306
ApeKI GCWGC 4 cut(s) 229, 232, 235, 591
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 40, 57
AsuC2I CCSGG 3 cut(s) 55, 124, 293
AvaI CYCGRG 4 cut(s) 89, 259, 302, 323
AvaII GGWCC 1 cut(s) 57
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 4 cut(s) 26, 90, 96, 276
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 4 cut(s) 219, 222, 241, 578
BccI CCATC 4 cut(s) 104, 263, 390, 509
BceAI ACGGC 1 cut(s) 293
BciVI GTATCC 1 cut(s) 130
BcnI CCSGG 3 cut(s) 55, 124, 293
BfuI GTATCC 1 cut(s) 130
Bme1390I CCNGG 3 cut(s) 55, 124, 293
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 4 cut(s) 89, 259, 302, 323
BmgT120I GGNCC 2 cut(s) 40, 57
BmiI GGNNCC 2 cut(s) 214, 275
BmrFI CCNGG 3 cut(s) 55, 124, 293
BpuMI CCSGG 3 cut(s) 55, 124, 293
Bsa29I ATCGAT 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 108, 239, 245
BsaXI ACNNNNNCTCC 6 cut(s) 161, 164, 191, 194, 269, 299
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 192, 195
Bse118I RCCGGY 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 535
Bse8I GATNNNNATC 1 cut(s) 381
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 108, 239, 245
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 3 cut(s) 130, 192, 195
BseMI GCAATG 1 cut(s) 535
BseRI GAGGAG 1 cut(s) 214
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 4 cut(s) 219, 222, 241, 578
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 6 cut(s) 41, 104, 127, 140, 244, 308
BshNI GGYRCC 1 cut(s) 212
BshVI ATCGAT 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 4 cut(s) 89, 259, 302, 323
BsiSI CCGG 5 cut(s) 55, 124, 131, 189, 292
BslI CCNNNNNNNGG 3 cut(s) 130, 192, 195
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 6 cut(s) 41, 104, 127, 140, 244, 308
BsoBI CYCGRG 4 cut(s) 89, 259, 302, 323
Bsp1286I GDGCHC 4 cut(s) 26, 90, 96, 276
Bsp143I GATC 3 cut(s) 343, 376, 463
BspACI CCGC 9 cut(s) 5, 128, 134, 137, 183, 186, 216, 227, 534
BspANI GGCC 6 cut(s) 41, 104, 127, 140, 244, 308
BspDI ATCGAT 1 cut(s) 267
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 2 cut(s) 214, 275
BspPI GGATC 1 cut(s) 471
BspT107I GGYRCC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 535
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 108, 239, 245
BssMI GATC 3 cut(s) 343, 376, 463
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 1 cut(s) 353
BstAPI GCANNNNNTGC 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 3 cut(s) 35, 39, 132
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 3 cut(s) 346, 379, 466
BstMBI GATC 3 cut(s) 343, 376, 463
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 4 cut(s) 30, 232, 235, 241
BstSCI CCNGG 3 cut(s) 53, 122, 291
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 4 cut(s) 219, 222, 241, 578
BstZI CGGCCG 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 267
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 6 cut(s) 41, 104, 127, 140, 244, 308
BsuTUI ATCGAT 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 439
Cac8I GCNNGC 3 cut(s) 35, 39, 132
CaiI CAGNNNCTG 1 cut(s) 235
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 40, 57
ClaI ATCGAT 1 cut(s) 267
Csp6I GTAC 3 cut(s) 49, 172, 599
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 4 cut(s) 16, 100, 160, 374
CviQI GTAC 3 cut(s) 49, 172, 599
DpnI GATC 3 cut(s) 345, 378, 465
DpnII GATC 3 cut(s) 343, 376, 463
EaeI YGGCCR 2 cut(s) 102, 125
EagI CGGCCG 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 2 cut(s) 20, 172
Ecl136II GAGCTC 1 cut(s) 88
EclXI CGGCCG 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 4 cut(s) 26, 90, 96, 276
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 88
Eco88I CYCGRG 4 cut(s) 89, 259, 302, 323
EcoICRI GAGCTC 1 cut(s) 88
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 4 cut(s) 26, 90, 96, 276
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 4 cut(s) 19, 103, 163, 377
FatI CATG 4 cut(s) 15, 99, 159, 373
FriOI GRGCYC 4 cut(s) 26, 90, 96, 276
FspI TGCGCA 1 cut(s) 32
GlaI GCGC 1 cut(s) 32
HaeIII GGCC 6 cut(s) 41, 104, 127, 140, 244, 308
HapII CCGG 5 cut(s) 55, 124, 131, 189, 292
HhaI GCGC 1 cut(s) 33
Hin1II CATG 4 cut(s) 19, 103, 163, 377
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 2 cut(s) 76, 264
HpaII CCGG 5 cut(s) 55, 124, 131, 189, 292
Hpy166II GTNNAC 2 cut(s) 51, 445
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 3 cut(s) 80, 325, 563
Hpy8I GTNNAC 2 cut(s) 51, 445
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 4 cut(s) 13, 70, 160, 446
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 232, 235, 241
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 4 cut(s) 19, 103, 163, 377
HspAI GCGC 1 cut(s) 31
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Kzo9I GATC 3 cut(s) 343, 376, 463
LmnI GCTCC 2 cut(s) 201, 279
LpnPI CCDG 9 cut(s) 23, 31, 68, 137, 144, 202, 305, 388, 601
Lsp1109I GCAGC 4 cut(s) 219, 222, 241, 578
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 332
MalI GATC 3 cut(s) 345, 378, 465
MboI GATC 3 cut(s) 343, 376, 463
MboII GAAGA 3 cut(s) 340, 434, 437
MhlI GDGCHC 4 cut(s) 26, 90, 96, 276
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 3 cut(s) 313, 387, 547
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 70
Mox20I TGGCCA 1 cut(s) 104
MreI CGCCGGCG 1 cut(s) 130
MroNI GCCGGC 1 cut(s) 130
MscI TGGCCA 1 cut(s) 104
MseI TTAA 2 cut(s) 312, 390
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 232, 591
MspI CCGG 5 cut(s) 55, 124, 131, 189, 292
MspR9I CCNGG 3 cut(s) 55, 124, 293
Mva1269I GAATGC 1 cut(s) 369
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 4 cut(s) 30, 232, 235, 241
NaeI GCCGGC 1 cut(s) 132
NciI CCSGG 3 cut(s) 55, 124, 293
NdeII GATC 3 cut(s) 343, 376, 463
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 4 cut(s) 19, 103, 163, 377
NlaIV GGNNCC 2 cut(s) 214, 275
NmeAIII GCCGAG 3 cut(s) 131, 264, 270
NmuCI GTSAC 1 cut(s) 332
NsbI TGCGCA 1 cut(s) 32
PaeR7I CTCGAG 3 cut(s) 89, 302, 323
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 369
PdiI GCCGGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 264
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 214, 275
PspPI GGNCC 2 cut(s) 40, 57
PspXI VCTCGAGB 2 cut(s) 89, 302
PstNI CAGNNNCTG 1 cut(s) 235
PvuII CAGCTG 2 cut(s) 232, 591
RsaI GTAC 3 cut(s) 50, 173, 600
RsaNI GTAC 3 cut(s) 49, 172, 599
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 312, 390
Sau3AI GATC 3 cut(s) 343, 376, 463
Sau96I GGNCC 2 cut(s) 40, 57
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 3 cut(s) 55, 124, 293
SduI GDGCHC 4 cut(s) 26, 90, 96, 276
SetI ASST 9 cut(s) 39, 62, 90, 110, 177, 234, 324, 593, 604
Sfr274I CTCGAG 3 cut(s) 89, 302, 323
SgrAI CRCCGGYG 1 cut(s) 130
SinI GGWCC 1 cut(s) 57
SlaI CTCGAG 3 cut(s) 89, 302, 323
SmlI CTYRAG 3 cut(s) 89, 302, 323
SmoI CTYRAG 3 cut(s) 89, 302, 323
Sse9I AATT 3 cut(s) 313, 387, 547
SsiI CCGC 9 cut(s) 5, 128, 134, 137, 183, 186, 216, 227, 534
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 53, 122, 291
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 434
TaiI ACGT 1 cut(s) 177
TaqI TCGA 5 cut(s) 90, 267, 303, 324, 385
TaqII GACCGA 1 cut(s) 411
TasI AATT 3 cut(s) 313, 387, 547
TauI GCSGC 6 cut(s) 130, 137, 140, 188, 218, 229
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 2 cut(s) 312, 390
Tru9I TTAA 2 cut(s) 312, 390
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 4 cut(s) 229, 232, 235, 591
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 1 cut(s) 439
VpaK11BI GGWCC 1 cut(s) 57
XhoI CTCGAG 3 cut(s) 89, 302, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.