CONTAINS InterPro DOMAIN s RNA polymerase II-associated protein 1, C-terminal (InterPro IPR013929), RNA polymerase II-associated protein 1, N-terminal
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38440 |
| fragaria_vesca | FvH4_2g15920 FvH4_2g15920 |
| malus_domestica | MD05G1128200.v1.1 MD10G1131500.v1.1 |
| prunus_persica | Prupe.8G172300_v2.0.a1 |
| pyrus_communis | pycom05g12410 pycom10g11260 |
| rosa_chinensis | RchiOBHm_Chr6g0279371 |
| rosa_laevigata | RLG00000013150 |
| rosa_multiflora | Rmu_sc0026652.1_g000002 Rmu_ssc0000349.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00188950 |
| rosa_rugosa | Rorug06G0124200 |
| rosa_samantha | Rh6AG232900 Rh6BG237300 Rh6CG239400 Rh6DG231100 |
| rosa_wichuraiana | Rw6G020340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2677 |
| Acc36I | ACCTGC | 4 cut(s) | 1079, 3071, 3853, 3885 |
| AccB1I | GGYRCC | 1 cut(s) | 2966 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1251, 2492, 3408 |
| AccBSI | CCGCTC | 1 cut(s) | 4379 |
| AccI | GTMKAC | 2 cut(s) | 1372, 3632 |
| AccII | CGCG | 2 cut(s) | 608, 4078 |
| AccIII | TCCGGA | 1 cut(s) | 28 |
| AclI | AACGTT | 1 cut(s) | 253 |
| AclWI | GGATC | 9 cut(s) | 353, 710, 723, 1070, 1083, 2703, 3034, 3583, 4090 |
| AcoI | YGGCCR | 2 cut(s) | 444, 3856 |
| AcsI | RAATTY | 6 cut(s) | 529, 817, 1396, 1659, 1778, 1901 |
| AcuI | CTGAAG | 3 cut(s) | 417, 3235, 4058 |
| AdeI | CACNNNGTG | 1 cut(s) | 1127 |
| AfaI | GTAC | 7 cut(s) | 1176, 1514, 1891, 2228, 2410, 3603, 3689 |
| AfeI | AGCGCT | 2 cut(s) | 1519, 1695 |
| AflII | CTTAAG | 1 cut(s) | 398 |
| AflIII | ACRYGT | 3 cut(s) | 373, 606, 4076 |
| AjnI | CCWGG | 6 cut(s) | 476, 892, 1078, 2187, 2567, 3150 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 32, 64, 1467, 1499 |
| Alw21I | GWGCWC | 2 cut(s) | 2819, 3927 |
| AlwI | GGATC | 9 cut(s) | 353, 710, 723, 1070, 1083, 2703, 3034, 3583, 4090 |
| Ama87I | CYCGRG | 3 cut(s) | 326, 1136, 3944 |
| Aor13HI | TCCGGA | 1 cut(s) | 28 |
| Aor51HI | AGCGCT | 2 cut(s) | 1519, 1695 |
| ApoI | RAATTY | 6 cut(s) | 529, 817, 1396, 1659, 1778, 1901 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 549, 775, 1802 |
| AspLEI | GCGC | 3 cut(s) | 1520, 1696, 3455 |
| AsuC2I | CCSGG | 4 cut(s) | 1137, 1138, 1876, 2895 |
| AsuII | TTCGAA | 2 cut(s) | 584, 2127 |
| AsuNHI | GCTAGC | 1 cut(s) | 2918 |
| AvaI | CYCGRG | 3 cut(s) | 326, 1136, 3944 |
| AvaII | GGWCC | 6 cut(s) | 170, 322, 1280, 1424, 2191, 3083 |
| AxyI | CCTNAGG | 1 cut(s) | 210 |
| BaeGI | GKGCMC | 1 cut(s) | 3323 |
| BamHI | GGATCC | 2 cut(s) | 715, 1075 |
| BanI | GGYRCC | 1 cut(s) | 2966 |
| BanII | GRGCYC | 1 cut(s) | 3415 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2445, 2477, 3226, 3258 |
| BauI | CACGAG | 1 cut(s) | 3101 |
| BbsI | GAAGAC | 4 cut(s) | 603, 2645, 2966, 3672 |
| Bbv12I | GWGCWC | 2 cut(s) | 2819, 3927 |
| BbvCI | CCTCAGC | 2 cut(s) | 381, 684 |
| BceAI | ACGGC | 2 cut(s) | 1464, 4004 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 662, 696 |
| BciT130I | CCWGG | 6 cut(s) | 478, 894, 1080, 2189, 2569, 3152 |
| BciVI | GTATCC | 5 cut(s) | 1576, 1782, 2060, 2769, 4165 |
| BclI | TGATCA | 2 cut(s) | 1882, 3019 |
| BcnI | CCSGG | 4 cut(s) | 1137, 1138, 1876, 2895 |
| BfaI | CTAG | 7 cut(s) | 575, 1982, 2630, 2706, 2919, 3678, 3962 |
| BfmI | CTRYAG | 1 cut(s) | 3698 |
| BfoI | RGCGCY | 3 cut(s) | 1521, 1697, 3456 |
| BfrI | CTTAAG | 1 cut(s) | 398 |
| BfuAI | ACCTGC | 4 cut(s) | 1079, 3071, 3853, 3885 |
| BfuI | GTATCC | 5 cut(s) | 1576, 1782, 2060, 2769, 4165 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 443, 1265 |
| BglII | AGATCT | 1 cut(s) | 4231 |
| BlpI | GCTNAGC | 1 cut(s) | 2796 |
| BmcAI | AGTACT | 1 cut(s) | 1891 |
| Bme18I | GGWCC | 6 cut(s) | 170, 322, 1280, 1424, 2191, 3083 |
| BmeT110I | CYCGRG | 3 cut(s) | 326, 1136, 3944 |
| BmrI | ACTGGG | 1 cut(s) | 1261 |
| BmtI | GCTAGC | 1 cut(s) | 2922 |
| BmuI | ACTGGG | 1 cut(s) | 1261 |
| BoxI | GACNNNNGTC | 3 cut(s) | 607, 3556, 4184 |
| BpiI | GAAGAC | 4 cut(s) | 603, 2645, 2966, 3672 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 1300, 1332, 1369, 1401, 2420, 2452, 3776, 3808 |
| BpmI | CTGGAG | 8 cut(s) | 1433, 1694, 2290, 2769, 3353, 3552, 3824, 4379 |
| Bpu10I | CCTNAGC | 5 cut(s) | 381, 684, 690, 1290, 2135 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2796 |
| Bpu14I | TTCGAA | 2 cut(s) | 584, 2127 |
| BpuEI | CTTGAG | 9 cut(s) | 976, 1081, 1718, 2216, 2318, 2447, 2601, 3575, 4046 |
| BpuMI | CCSGG | 4 cut(s) | 1137, 1138, 1876, 2895 |
| Bsa29I | ATCGAT | 1 cut(s) | 3284 |
| BsaI | GGTCTC | 4 cut(s) | 352, 409, 1637, 3871 |
| BsaWI | WCCGGW | 4 cut(s) | 28, 1282, 2031, 2473 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2579, 2609 |
| Bse118I | RCCGGY | 2 cut(s) | 2969, 3858 |
| Bse1I | ACTGG | 9 cut(s) | 474, 1018, 1256, 1511, 2273, 2752, 2784, 3446, 4362 |
| Bse21I | CCTNAGG | 1 cut(s) | 210 |
| Bse3DI | GCAATG | 1 cut(s) | 273 |
| BseAI | TCCGGA | 1 cut(s) | 28 |
| BseBI | CCWGG | 6 cut(s) | 478, 894, 1080, 2189, 2569, 3152 |
| BseCI | ATCGAT | 1 cut(s) | 3284 |
| BseGI | GGATG | 9 cut(s) | 361, 365, 452, 925, 1317, 1567, 2682, 3991, 4227 |
| BseMI | GCAATG | 1 cut(s) | 273 |
| BseNI | ACTGG | 9 cut(s) | 474, 1018, 1256, 1511, 2273, 2752, 2784, 3446, 4362 |
| BseRI | GAGGAG | 3 cut(s) | 558, 3385, 4337 |
| BseSI | GKGCMC | 1 cut(s) | 3323 |
| BseYI | CCCAGC | 1 cut(s) | 2092 |
| BsgI | GTGCAG | 2 cut(s) | 705, 803 |
| Bsh1236I | CGCG | 2 cut(s) | 608, 4078 |
| BshNI | GGYRCC | 1 cut(s) | 2966 |
| BshVI | ATCGAT | 1 cut(s) | 3284 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2819, 3927 |
| BsiHKCI | CYCGRG | 3 cut(s) | 326, 1136, 3944 |
| BslFI | GGGAC | 8 cut(s) | 362, 610, 1437, 1582, 1930, 2272, 2279, 3227 |
| BsmBI | CGTCTC | 1 cut(s) | 621 |
| BsmFI | GGGAC | 8 cut(s) | 362, 610, 1437, 1582, 1930, 2272, 2279, 3227 |
| BsmI | GAATGC | 5 cut(s) | 268, 775, 1738, 3206, 3429 |
| Bso31I | GGTCTC | 4 cut(s) | 352, 409, 1637, 3871 |
| BsoBI | CYCGRG | 3 cut(s) | 326, 1136, 3944 |
| Bsp119I | TTCGAA | 2 cut(s) | 584, 2127 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2819, 3323, 3415, 3927 |
| Bsp13I | TCCGGA | 1 cut(s) | 28 |
| Bsp1407I | TGTACA | 1 cut(s) | 3687 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2796 |
| Bsp19I | CCATGG | 2 cut(s) | 2465, 4266 |
| BspDI | ATCGAT | 1 cut(s) | 3284 |
| BspEI | TCCGGA | 1 cut(s) | 28 |
| BspFNI | CGCG | 2 cut(s) | 608, 4078 |
| BspHI | TCATGA | 3 cut(s) | 258, 3343, 3781 |
| BspMAI | CTGCAG | 1 cut(s) | 3702 |
| BspMI | ACCTGC | 4 cut(s) | 1079, 3071, 3853, 3885 |
| BspOI | GCTAGC | 1 cut(s) | 2922 |
| BspPI | GGATC | 9 cut(s) | 353, 710, 723, 1070, 1083, 2703, 3034, 3583, 4090 |
| BspT104I | TTCGAA | 2 cut(s) | 584, 2127 |
| BspT107I | GGYRCC | 1 cut(s) | 2966 |
| BspTI | CTTAAG | 1 cut(s) | 398 |
| BspTNI | GGTCTC | 4 cut(s) | 352, 409, 1637, 3871 |
| BsrBI | CCGCTC | 1 cut(s) | 4379 |
| BsrDI | GCAATG | 1 cut(s) | 273 |
| BsrFI | RCCGGY | 2 cut(s) | 2969, 3858 |
| BsrGI | TGTACA | 1 cut(s) | 3687 |
| BsrI | ACTGG | 9 cut(s) | 474, 1018, 1256, 1511, 2273, 2752, 2784, 3446, 4362 |
| BssAI | RCCGGY | 2 cut(s) | 2969, 3858 |
| BssSI | CACGAG | 1 cut(s) | 3101 |
| BssT1I | CCWWGG | 8 cut(s) | 122, 540, 904, 1276, 2465, 3086, 4143, 4266 |
| Bst2BI | CACGAG | 1 cut(s) | 3101 |
| Bst2UI | CCWGG | 6 cut(s) | 478, 894, 1080, 2189, 2569, 3152 |
| Bst4CI | ACNGT | 8 cut(s) | 519, 3325, 3353, 3473, 3606, 3637, 3746, 3922 |
| Bst6I | CTCTTC | 1 cut(s) | 2569 |
| BstAFI | CTTAAG | 1 cut(s) | 398 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 781 |
| BstAUI | TGTACA | 1 cut(s) | 3687 |
| BstBI | TTCGAA | 2 cut(s) | 584, 2127 |
| BstDSI | CCRYGG | 4 cut(s) | 1495, 2243, 2465, 4266 |
| BstEII | GGTNACC | 1 cut(s) | 3989 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1862 |
| BstF5I | GGATG | 9 cut(s) | 361, 365, 452, 925, 1317, 1567, 2682, 3991, 4227 |
| BstFNI | CGCG | 2 cut(s) | 608, 4078 |
| BstH2I | RGCGCY | 3 cut(s) | 1521, 1697, 3456 |
| BstHHI | GCGC | 3 cut(s) | 1520, 1696, 3455 |
| BstNI | CCWGG | 6 cut(s) | 478, 894, 1080, 2189, 2569, 3152 |
| BstNSI | RCATGY | 3 cut(s) | 377, 1353, 3140 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 607, 3556, 4184 |
| BstPI | GGTNACC | 1 cut(s) | 3989 |
| BstSFI | CTRYAG | 1 cut(s) | 3698 |
| BstSLI | GKGCMC | 1 cut(s) | 3323 |
| BstUI | CGCG | 2 cut(s) | 608, 4078 |
| BstV2I | GAAGAC | 4 cut(s) | 603, 2645, 2966, 3672 |
| BstX2I | RGATCY | 5 cut(s) | 715, 1075, 2708, 3026, 4231 |
| BstYI | RGATCY | 5 cut(s) | 715, 1075, 2708, 3026, 4231 |
| Bsu15I | ATCGAT | 1 cut(s) | 3284 |
| Bsu36I | CCTNAGG | 1 cut(s) | 210 |
| BsuI | GTATCC | 5 cut(s) | 1576, 1782, 2060, 2769, 4165 |
| BsuTUI | ATCGAT | 1 cut(s) | 3284 |
| BtgI | CCRYGG | 4 cut(s) | 1495, 2243, 2465, 4266 |
| BtsCI | GGATG | 9 cut(s) | 361, 365, 452, 925, 1317, 1567, 2682, 3991, 4227 |
| BtsIMutI | CAGTG | 9 cut(s) | 1245, 1373, 2300, 2745, 3310, 3439, 3478, 3750, 3927 |
| BveI | ACCTGC | 4 cut(s) | 1079, 3071, 3853, 3885 |
| CciI | TCATGA | 3 cut(s) | 258, 3343, 3781 |
| CfoI | GCGC | 3 cut(s) | 1520, 1696, 3455 |
| Cfr10I | RCCGGY | 2 cut(s) | 2969, 3858 |
| Cfr9I | CCCGGG | 1 cut(s) | 1136 |
| ClaI | ATCGAT | 1 cut(s) | 3284 |
| CseI | GACGC | 2 cut(s) | 597, 4084 |
| CsiI | ACCWGGT | 1 cut(s) | 2187 |
| Csp6I | GTAC | 7 cut(s) | 1175, 1513, 1890, 2227, 2409, 3602, 3688 |
| CviQI | GTAC | 7 cut(s) | 1175, 1513, 1890, 2227, 2409, 3602, 3688 |
| DraI | TTTAAA | 1 cut(s) | 558 |
| DraIII | CACNNNGTG | 1 cut(s) | 1127 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2677 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2677 |
| EaeI | YGGCCR | 2 cut(s) | 444, 3856 |
| Eam1104I | CTCTTC | 1 cut(s) | 2569 |
| EarI | CTCTTC | 1 cut(s) | 2569 |
| EciI | GGCGGA | 2 cut(s) | 1844, 2898 |
| Eco130I | CCWWGG | 8 cut(s) | 122, 540, 904, 1276, 2465, 3086, 4143, 4266 |
| Eco147I | AGGCCT | 2 cut(s) | 2183, 4031 |
| Eco24I | GRGCYC | 1 cut(s) | 3415 |
| Eco31I | GGTCTC | 4 cut(s) | 352, 409, 1637, 3871 |
| Eco32I | GATATC | 2 cut(s) | 1441, 1648 |
| Eco47I | GGWCC | 6 cut(s) | 170, 322, 1280, 1424, 2191, 3083 |
| Eco47III | AGCGCT | 2 cut(s) | 1519, 1695 |
| Eco57I | CTGAAG | 3 cut(s) | 417, 3235, 4058 |
| Eco81I | CCTNAGG | 1 cut(s) | 210 |
| Eco88I | CYCGRG | 3 cut(s) | 326, 1136, 3944 |
| Eco91I | GGTNACC | 1 cut(s) | 3989 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1862 |
| EcoO109I | RGGNCCY | 1 cut(s) | 126 |
| EcoO65I | GGTNACC | 1 cut(s) | 3989 |
| EcoRI | GAATTC | 1 cut(s) | 817 |
| EcoRII | CCWGG | 6 cut(s) | 476, 892, 1078, 2187, 2567, 3150 |
| EcoRV | GATATC | 2 cut(s) | 1441, 1648 |
| EcoT14I | CCWWGG | 8 cut(s) | 122, 540, 904, 1276, 2465, 3086, 4143, 4266 |
| EcoT22I | ATGCAT | 1 cut(s) | 925 |
| EcoT38I | GRGCYC | 1 cut(s) | 3415 |
| ErhI | CCWWGG | 8 cut(s) | 122, 540, 904, 1276, 2465, 3086, 4143, 4266 |
| Esp3I | CGTCTC | 1 cut(s) | 621 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 538, 570 |
| FaqI | GGGAC | 8 cut(s) | 362, 610, 1437, 1582, 1930, 2272, 2279, 3227 |
| FauI | CCCGC | 2 cut(s) | 8, 2331 |
| FauNDI | CATATG | 1 cut(s) | 3838 |
| FbaI | TGATCA | 2 cut(s) | 1882, 3019 |
| FblI | GTMKAC | 2 cut(s) | 1372, 3632 |
| FokI | GGATG | 9 cut(s) | 352, 368, 439, 932, 1324, 1574, 2669, 3998, 4234 |
| FriOI | GRGCYC | 1 cut(s) | 3415 |
| FspBI | CTAG | 7 cut(s) | 575, 1982, 2630, 2706, 2919, 3678, 3962 |
| GlaI | GCGC | 3 cut(s) | 1519, 1695, 3454 |
| GsaI | CCCAGC | 1 cut(s) | 2096 |
| GsuI | CTGGAG | 8 cut(s) | 1433, 1694, 2290, 2769, 3353, 3552, 3824, 4379 |
| HaeII | RGCGCY | 3 cut(s) | 1521, 1697, 3456 |
| HgaI | GACGC | 2 cut(s) | 597, 4084 |
| HhaI | GCGC | 3 cut(s) | 1520, 1696, 3455 |
| Hin6I | GCGC | 3 cut(s) | 1518, 1694, 3453 |
| HinP1I | GCGC | 3 cut(s) | 1518, 1694, 3453 |
| HincII | GTYRAC | 2 cut(s) | 2664, 2940 |
| HindII | GTYRAC | 2 cut(s) | 2664, 2940 |
| HindIII | AAGCTT | 3 cut(s) | 1185, 2000, 2516 |
| HpaI | GTTAAC | 1 cut(s) | 2664 |
| Hpy99I | CGWCG | 3 cut(s) | 152, 677, 4078 |
| HpyCH4III | ACNGT | 8 cut(s) | 519, 3325, 3353, 3473, 3606, 3637, 3746, 3922 |
| HpyCH4IV | ACGT | 5 cut(s) | 45, 253, 1051, 1827, 2541 |
| HpySE526I | ACGT | 5 cut(s) | 45, 253, 1051, 1827, 2541 |
| HspAI | GCGC | 3 cut(s) | 1518, 1694, 3453 |
| Kpn2I | TCCGGA | 1 cut(s) | 28 |
| KroI | GCCGGC | 1 cut(s) | 3858 |
| KroNI | GCCGGC | 1 cut(s) | 3860 |
| Ksp22I | TGATCA | 2 cut(s) | 1882, 3019 |
| KspAI | GTTAAC | 1 cut(s) | 2664 |
| LmnI | GCTCC | 9 cut(s) | 4, 66, 187, 2034, 2271, 2728, 2915, 3703, 3817 |
| MabI | ACCWGGT | 1 cut(s) | 2187 |
| MaeI | CTAG | 7 cut(s) | 575, 1982, 2630, 2706, 2919, 3678, 3962 |
| MaeII | ACGT | 5 cut(s) | 45, 253, 1051, 1827, 2541 |
| MaeIII | GTNAC | 8 cut(s) | 666, 841, 1091, 1717, 1930, 3264, 3746, 3989 |
| MbiI | CCGCTC | 1 cut(s) | 4379 |
| MfeI | CAATTG | 3 cut(s) | 1791, 1808, 2862 |
| MflI | RGATCY | 5 cut(s) | 715, 1075, 2708, 3026, 4231 |
| MhlI | GDGCHC | 4 cut(s) | 2819, 3323, 3415, 3927 |
| MluI | ACGCGT | 2 cut(s) | 606, 4076 |
| MmeI | TCCRAC | 3 cut(s) | 2288, 2881, 3628 |
| Mph1103I | ATGCAT | 1 cut(s) | 925 |
| MroI | TCCGGA | 1 cut(s) | 28 |
| MroNI | GCCGGC | 1 cut(s) | 3858 |
| MroXI | GAANNNNTTC | 3 cut(s) | 549, 775, 1802 |
| MseI | TTAA | 8 cut(s) | 399, 525, 557, 1389, 1404, 1862, 2663, 2991 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2842 |
| MspA1I | CMGCKG | 2 cut(s) | 1007, 4289 |
| MspCI | CTTAAG | 1 cut(s) | 398 |
| MunI | CAATTG | 3 cut(s) | 1791, 1808, 2862 |
| Mva1269I | GAATGC | 5 cut(s) | 268, 775, 1738, 3206, 3429 |
| MvaI | CCWGG | 6 cut(s) | 478, 894, 1080, 2189, 2569, 3152 |
| MvnI | CGCG | 2 cut(s) | 608, 4078 |
| NaeI | GCCGGC | 1 cut(s) | 3860 |
| NciI | CCSGG | 4 cut(s) | 1137, 1138, 1876, 2895 |
| NcoI | CCATGG | 2 cut(s) | 2465, 4266 |
| NdeI | CATATG | 1 cut(s) | 3838 |
| NgoMIV | GCCGGC | 1 cut(s) | 3858 |
| NheI | GCTAGC | 1 cut(s) | 2918 |
| NmeAIII | GCCGAG | 3 cut(s) | 2233, 3316, 3981 |
| NmuCI | GTSAC | 4 cut(s) | 666, 841, 1930, 3746 |
| NsiI | ATGCAT | 1 cut(s) | 925 |
| NspI | RCATGY | 3 cut(s) | 377, 1353, 3140 |
| NspV | TTCGAA | 2 cut(s) | 584, 2127 |
| PaeI | GCATGC | 1 cut(s) | 3140 |
| PaeR7I | CTCGAG | 1 cut(s) | 3944 |
| PagI | TCATGA | 3 cut(s) | 258, 3343, 3781 |
| PceI | AGGCCT | 2 cut(s) | 2183, 4031 |
| PciI | ACATGT | 1 cut(s) | 373 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 69 |
| PctI | GAATGC | 5 cut(s) | 268, 775, 1738, 3206, 3429 |
| PdiI | GCCGGC | 1 cut(s) | 3860 |
| PdmI | GAANNNNTTC | 3 cut(s) | 549, 775, 1802 |
| PflFI | GACNNNGTC | 1 cut(s) | 664 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1251, 2492, 3408 |
| PscI | ACATGT | 1 cut(s) | 373 |
| PshAI | GACNNNNGTC | 3 cut(s) | 607, 3556, 4184 |
| Psp1406I | AACGTT | 1 cut(s) | 253 |
| Psp6I | CCWGG | 6 cut(s) | 476, 892, 1078, 2187, 2567, 3150 |
| PspEI | GGTNACC | 1 cut(s) | 3989 |
| PspFI | CCCAGC | 1 cut(s) | 2092 |
| PspGI | CCWGG | 6 cut(s) | 476, 892, 1078, 2187, 2567, 3150 |
| PstI | CTGCAG | 1 cut(s) | 3702 |
| PsuI | RGATCY | 5 cut(s) | 715, 1075, 2708, 3026, 4231 |
| PsyI | GACNNNGTC | 1 cut(s) | 664 |
| PvuII | CAGCTG | 1 cut(s) | 1007 |
| RsaI | GTAC | 7 cut(s) | 1176, 1514, 1891, 2228, 2410, 3603, 3689 |
| RsaNI | GTAC | 7 cut(s) | 1175, 1513, 1890, 2227, 2409, 3602, 3688 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2842 |
| SaqAI | TTAA | 8 cut(s) | 399, 525, 557, 1389, 1404, 1862, 2663, 2991 |
| ScaI | AGTACT | 1 cut(s) | 1891 |
| SduI | GDGCHC | 4 cut(s) | 2819, 3323, 3415, 3927 |
| SexAI | ACCWGGT | 1 cut(s) | 2187 |
| SfcI | CTRYAG | 1 cut(s) | 3698 |
| Sfr274I | CTCGAG | 1 cut(s) | 3944 |
| SfuI | TTCGAA | 2 cut(s) | 584, 2127 |
| SinI | GGWCC | 6 cut(s) | 170, 322, 1280, 1424, 2191, 3083 |
| SlaI | CTCGAG | 1 cut(s) | 3944 |
| SmaI | CCCGGG | 1 cut(s) | 1138 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2842 |
| SphI | GCATGC | 1 cut(s) | 3140 |
| SseBI | AGGCCT | 2 cut(s) | 2183, 4031 |
| SspI | AATATT | 2 cut(s) | 1408, 1534 |
| SspMI | CTAG | 7 cut(s) | 575, 1982, 2630, 2706, 2919, 3678, 3962 |
| StuI | AGGCCT | 2 cut(s) | 2183, 4031 |
| StyI | CCWWGG | 8 cut(s) | 122, 540, 904, 1276, 2465, 3086, 4143, 4266 |
| TaaI | ACNGT | 8 cut(s) | 519, 3325, 3353, 3473, 3606, 3637, 3746, 3922 |
| TaiI | ACGT | 5 cut(s) | 48, 256, 1054, 1830, 2544 |
| TatI | WGTACW | 5 cut(s) | 1174, 1512, 1889, 2226, 3687 |
| TauI | GCSGC | 5 cut(s) | 115, 446, 1088, 4210, 4379 |
| Tru1I | TTAA | 8 cut(s) | 399, 525, 557, 1389, 1404, 1862, 2663, 2991 |
| Tru9I | TTAA | 8 cut(s) | 399, 525, 557, 1389, 1404, 1862, 2663, 2991 |
| TscAI | CASTG | 9 cut(s) | 1252, 1373, 2307, 2752, 3310, 3446, 3478, 3757, 3927 |
| TseFI | GTSAC | 4 cut(s) | 666, 841, 1930, 3746 |
| Tsp45I | GTSAC | 4 cut(s) | 666, 841, 1930, 3746 |
| TspGWI | ACGGA | 6 cut(s) | 183, 1484, 1535, 1595, 2260, 2683 |
| TspMI | CCCGGG | 1 cut(s) | 1136 |
| TspRI | CASTG | 9 cut(s) | 1252, 1373, 2307, 2752, 3310, 3446, 3478, 3757, 3927 |
| Tth111I | GACNNNGTC | 1 cut(s) | 664 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1251, 2492, 3408 |
| Vha464I | CTTAAG | 1 cut(s) | 398 |
| VpaK11BI | GGWCC | 6 cut(s) | 170, 322, 1280, 1424, 2191, 3083 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1862 |
| XapI | RAATTY | 6 cut(s) | 529, 817, 1396, 1659, 1778, 1901 |
| XbaI | TCTAGA | 1 cut(s) | 3961 |
| XceI | RCATGY | 3 cut(s) | 377, 1353, 3140 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2950, 4348 |
| XhoI | CTCGAG | 1 cut(s) | 3944 |
| XmaI | CCCGGG | 1 cut(s) | 1136 |
| XmiI | GTMKAC | 2 cut(s) | 1372, 3632 |
| XmnI | GAANNNNTTC | 3 cut(s) | 549, 775, 1802 |
| XspI | CTAG | 7 cut(s) | 575, 1982, 2630, 2706, 2919, 3678, 3962 |
| ZrmI | AGTACT | 1 cut(s) | 1891 |
| Zsp2I | ATGCAT | 1 cut(s) | 925 |