Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000349.1

Orthogroup ID

OG0012052

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 3505

Gene Structure 3504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000349.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1211 bp

atggggagattggaccctgcattactccaagtactcaaaaggaggggtgaagagaaactgaagaaggaaagaacctccagctcagataacaaggaccgaaaaccttcccctagttctcacactgctatgcctcatgtaaccgcagccaatacctcaaaccatacacggagtgatggtttagtgccgatttcaggccaagccaagggcaagctgtggaatgcttggagtgagagagtcgaggccgttaggggattaaggttttcctcagatgggactgttgttggaaattctttgcagcagatgcctcaaggtattaatctggcggggcgtgactacctgcgtactgagggagatcctggtgctactggttatacaattaaagaagcagtgtcactcactaggagtttgattgcaggacaacgggacctagcattggctcttctttcaaacgtgctcaataaggcattacaaaatattcatcaaaaccatgttcaaattaccagacaagatgctaataaagttgacagatctgtcgactgggaggctatctgggcttatgcacttggcccagaacctgaacttgttttagctctcaggatgtgtctcgatgataaccataaatccgtggttcgaatgtgtgccaaagttatttaccacgtattgagctgtgatgtgaatgagaacttcttcgatgtctcggagaaattagcacctattcataaggatacttttaccgcccctgtatttcgaagcaaaccggagattgatgttggtttccttcatggtgggttctggaagtacaatgctaaaccttctaatgttcttgctcttgatgaggatattattgattatgagattgaagggaagcgtacaattcaggacgacattgttgttgctggacaagattttgctgcaggtttggtgcggatgggaatccttccagcgctttgctatcttttggagtcagaccctacagcagctttggaagaatacattctttctatacttattgctatagcaaggcattccccaaaatgtgcgaatgcaatgatgatttgcgaaaggcttctccaaacagtggtcagcagattcattgcaaaagacaatatagaaattcagccttctaaaattaagtctgttagacttctaaaggtgttggcacaatctgatcggaagaggtgttttgattttataaagaatgggagcttcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0030154 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048869 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP1_C RPAP1_N

Protein Analysis

403

Amino Acids

44.79

Weight (kDa)

8.56

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38440
fragaria_vesca	FvH4_2g15920 FvH4_2g15920
malus_domestica	MD05G1128200.v1.1 MD10G1131500.v1.1
prunus_persica	Prupe.8G172300_v2.0.a1
pyrus_communis	pycom05g12410 pycom10g11260
rosa_chinensis	RchiOBHm_Chr6g0279371
rosa_laevigata	RLG00000013150
rosa_multiflora	Rmu_sc0026652.1_g000002 Rmu_ssc0000349.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188950
rosa_rugosa	Rorug06G0124200
rosa_samantha	Rh6AG232900 Rh6BG237300 Rh6CG239400 Rh6DG231100
rosa_wichuraiana	Rw6G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1193
AasI	GACNNNNNNGTC	1 cut(s)	530
Acc36I	ACCTGC	2 cut(s)	345, 905
AccB7I	CCANNNNNTGG	1 cut(s)	1078
AccI	GTMKAC	1 cut(s)	534
AciI	CCGC	4 cut(s)	141, 323, 735, 925
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	286, 1113
AcuI	CTGAAG	1 cut(s)	80
AdeI	CACNNNGTG	1 cut(s)	170
AfaI	GTAC	4 cut(s)	33, 343, 800, 871
AfeI	AGCGCT	1 cut(s)	945
AfiI	CCNNNNNNNGG	5 cut(s)	191, 202, 270, 433, 1078
AgsI	TTSAA	3 cut(s)	447, 494, 860
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	6 cut(s)	81, 211, 590, 666, 980, 1206
AluI	AGCT	6 cut(s)	81, 211, 590, 666, 980, 1206
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	2 cut(s)	608, 700
AlwI	GGATC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	575
Aor51HI	AGCGCT	1 cut(s)	945
AoxI	GGCC	3 cut(s)	193, 240, 565
ApeKI	GCWGC	4 cut(s)	143, 295, 911, 977
ApoI	RAATTY	2 cut(s)	286, 1113
AseI	ATTAAT	1 cut(s)	315
Asp700I	GAANNNNTTC	4 cut(s)	103, 686, 993, 1065
AspLEI	GCGC	1 cut(s)	946
AspS9I	GGNCC	4 cut(s)	13, 94, 424, 566
AsuHPI	GGTGA	1 cut(s)	59
AsuII	TTCGAA	2 cut(s)	631, 748
AvaII	GGWCC	3 cut(s)	13, 94, 424
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	155, 307, 898, 989
BccI	CCATC	3 cut(s)	167, 263, 922
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	718
BcoDI	GTCTC	2 cut(s)	608, 700
BfaI	CTAG	3 cut(s)	111, 399, 428
BfmI	CTRYAG	3 cut(s)	912, 972, 1014
BfoI	RGCGCY	1 cut(s)	947
BfuAI	ACCTGC	2 cut(s)	345, 905
BfuI	GTATCC	1 cut(s)	718
BglII	AGATCT	1 cut(s)	527
BisI	GCNGC	4 cut(s)	144, 296, 912, 978
BlsI	GCNGC	4 cut(s)	145, 297, 913, 979
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	3 cut(s)	13, 94, 424
BmgT120I	GGNCC	4 cut(s)	13, 94, 424, 566
BmiI	GGNNCC	2 cut(s)	15, 425
BmrFI	CCNGG	1 cut(s)	357
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	2 cut(s)	291, 499
BmuI	ACTGGG	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	61
Bpu14I	TTCGAA	2 cut(s)	631, 748
BpuEI	CTTGAG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	658
BsaBI	GATNNNNATC	1 cut(s)	932
BsaJI	CCNNGG	2 cut(s)	201, 624
BsaWI	WCCGGW	1 cut(s)	757
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	5 cut(s)	191, 202, 270, 433, 1078
Bse1I	ACTGG	2 cut(s)	370, 542
Bse3DI	GCAATG	2 cut(s)	1053, 1092
Bse8I	GATNNNNATC	1 cut(s)	932
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	201, 624
BseGI	GGATG	2 cut(s)	603, 933
BseJI	GATNNNNATC	1 cut(s)	932
BseLI	CCNNNNNNNGG	5 cut(s)	191, 202, 270, 433, 1078
BseMI	GCAATG	2 cut(s)	1053, 1092
BseMII	CTCAG	4 cut(s)	96, 279, 336, 607
BseNI	ACTGG	2 cut(s)	370, 542
BseXI	GCAGC	4 cut(s)	155, 307, 898, 989
BshFI	GGCC	3 cut(s)	195, 242, 567
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	758
BslFI	GGGAC	2 cut(s)	286, 437
BslI	CCNNNNNNNGG	5 cut(s)	191, 202, 270, 433, 1078
BsmAI	GTCTC	2 cut(s)	608, 700
BsmFI	GGGAC	2 cut(s)	286, 437
BsmI	GAATGC	3 cut(s)	223, 1024, 1048
BsnI	GGCC	3 cut(s)	195, 242, 567
Bsp119I	TTCGAA	2 cut(s)	631, 748
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	352, 527, 1168
BspACI	CCGC	4 cut(s)	141, 323, 735, 925
BspANI	GGCC	3 cut(s)	195, 242, 567
BspCNI	CTCAG	4 cut(s)	95, 278, 337, 606
BspLI	GGNNCC	2 cut(s)	15, 425
BspMAI	CTGCAG	1 cut(s)	916
BspMI	ACCTGC	2 cut(s)	345, 905
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	1 cut(s)	444
BspT104I	TTCGAA	2 cut(s)	631, 748
BsrDI	GCAATG	2 cut(s)	1053, 1092
BsrI	ACTGG	2 cut(s)	370, 542
BssECI	CCNNGG	2 cut(s)	201, 624
BssMI	GATC	3 cut(s)	352, 527, 1168
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	277, 1078
Bst6I	CTCTTC	3 cut(s)	45, 444, 1169
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstBAI	YACGTR	1 cut(s)	658
BstBI	TTCGAA	2 cut(s)	631, 748
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	4 cut(s)	82, 265, 345, 593
BstDSI	CCRYGG	1 cut(s)	624
BstF5I	GGATG	2 cut(s)	603, 933
BstH2I	RGCGCY	1 cut(s)	947
BstHHI	GCGC	1 cut(s)	946
BstKTI	GATC	3 cut(s)	355, 530, 1171
BstMAI	GTCTC	2 cut(s)	608, 700
BstMBI	GATC	3 cut(s)	352, 527, 1168
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 551
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	3 cut(s)	912, 972, 1014
BstV1I	GCAGC	4 cut(s)	155, 307, 898, 989
BstX2I	RGATCY	2 cut(s)	352, 527
BstYI	RGATCY	2 cut(s)	352, 527
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	3 cut(s)	195, 242, 567
BtgI	CCRYGG	1 cut(s)	624
BtsCI	GGATG	2 cut(s)	603, 933
BtsI	GCAGTG	2 cut(s)	120, 393
BtsIMutI	CAGTG	3 cut(s)	120, 393, 1083
BveI	ACCTGC	2 cut(s)	345, 905
Cac8I	GCNNGC	1 cut(s)	209
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	946
Cfr13I	GGNCC	4 cut(s)	13, 94, 424, 566
Csp6I	GTAC	4 cut(s)	32, 342, 799, 870
CviAII	CATG	3 cut(s)	134, 488, 782
CviQI	GTAC	4 cut(s)	32, 342, 799, 870
DdeI	CTNAG	4 cut(s)	82, 265, 345, 593
DpnI	GATC	3 cut(s)	354, 529, 1170
DpnII	GATC	3 cut(s)	352, 527, 1168
DraIII	CACNNNGTG	1 cut(s)	170
DrdI	GACNNNNNNGTC	1 cut(s)	530
DseDI	GACNNNNNNGTC	1 cut(s)	530
Eam1104I	CTCTTC	3 cut(s)	45, 444, 1169
EarI	CTCTTC	3 cut(s)	45, 444, 1169
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	3 cut(s)	13, 94, 424
Eco47III	AGCGCT	1 cut(s)	945
Eco57I	CTGAAG	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	137, 491, 785
FaqI	GGGAC	2 cut(s)	286, 437
FatI	CATG	3 cut(s)	133, 487, 781
FauI	CCCGC	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	4 cut(s)	144, 296, 912, 978
FokI	GGATG	2 cut(s)	610, 940
Fsp4HI	GCNGC	4 cut(s)	144, 296, 912, 978
FspBI	CTAG	3 cut(s)	111, 399, 428
GlaI	GCGC	1 cut(s)	945
GluI	GCNGC	4 cut(s)	144, 296, 912, 978
GsuI	CTGGAG	1 cut(s)	61
HaeII	RGCGCY	1 cut(s)	947
HaeIII	GGCC	3 cut(s)	195, 242, 567
HapII	CCGG	1 cut(s)	758
HhaI	GCGC	1 cut(s)	946
Hin1II	CATG	3 cut(s)	137, 491, 785
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HincII	GTYRAC	2 cut(s)	523, 535
HindII	GTYRAC	2 cut(s)	523, 535
HinfI	GANTC	4 cut(s)	234, 933, 962, 1089
HpaII	CCGG	1 cut(s)	758
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	2 cut(s)	523, 535
Hpy188I	TCNGA	6 cut(s)	85, 268, 700, 967, 1168, 1173
Hpy188III	TCNNGA	5 cut(s)	595, 605, 793, 830, 878
Hpy8I	GTNNAC	2 cut(s)	523, 535
HpyAV	CCTTC	7 cut(s)	58, 114, 788, 822, 854, 947, 1131
HpyCH4III	ACNGT	2 cut(s)	277, 1078
HpyCH4IV	ACGT	2 cut(s)	450, 657
HpyCH4V	TGCA	7 cut(s)	20, 295, 413, 560, 914, 1046, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 551
HpyF3I	CTNAG	4 cut(s)	82, 265, 345, 593
HpySE526I	ACGT	2 cut(s)	450, 657
Hsp92II	CATG	3 cut(s)	137, 491, 785
HspAI	GCGC	1 cut(s)	944
Kzo9I	GATC	3 cut(s)	352, 527, 1168
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	1203
Lsp1109I	GCAGC	4 cut(s)	155, 307, 898, 989
LweI	GCATC	2 cut(s)	291, 499
MaeI	CTAG	3 cut(s)	111, 399, 428
MaeII	ACGT	2 cut(s)	450, 657
MaeIII	GTNAC	3 cut(s)	136, 329, 390
MalI	GATC	3 cut(s)	354, 529, 1170
MboI	GATC	3 cut(s)	352, 527, 1168
MboII	GAAGA	6 cut(s)	62, 73, 431, 679, 998, 1186
MflI	RGATCY	2 cut(s)	352, 527
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	7 cut(s)	286, 375, 495, 704, 873, 1113, 1128
MlyI	GAGTC	2 cut(s)	243, 971
MmeI	TCCRAC	1 cut(s)	262
MroXI	GAANNNNTTC	4 cut(s)	103, 686, 993, 1065
MseI	TTAA	4 cut(s)	254, 315, 378, 1131
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	1 cut(s)	758
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	3 cut(s)	223, 1024, 1048
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	301, 551
NdeII	GATC	3 cut(s)	352, 527, 1168
NlaIII	CATG	3 cut(s)	137, 491, 785
NlaIV	GGNNCC	2 cut(s)	15, 425
NmuCI	GTSAC	2 cut(s)	329, 390
NspV	TTCGAA	2 cut(s)	631, 748
PciSI	GCTCTTC	1 cut(s)	444
PctI	GAATGC	3 cut(s)	223, 1024, 1048
PdmI	GAANNNNTTC	4 cut(s)	103, 686, 993, 1065
PfeI	GAWTC	2 cut(s)	933, 1089
PflMI	CCANNNNNTGG	1 cut(s)	1078
PkrI	GCNGC	4 cut(s)	145, 297, 913, 979
PleI	GAGTC	2 cut(s)	242, 970
PpsI	GAGTC	2 cut(s)	242, 970
Ppu21I	YACGTR	1 cut(s)	658
PpuMI	RGGWCCY	1 cut(s)	424
PshBI	ATTAAT	1 cut(s)	315
PsiI	TTATAA	1 cut(s)	1193
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	15, 425
PspPI	GGNCC	4 cut(s)	13, 94, 424, 566
PspPPI	RGGWCCY	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	2 cut(s)	352, 527
RsaI	GTAC	4 cut(s)	33, 343, 800, 871
RsaNI	GTAC	4 cut(s)	32, 342, 799, 870
RseI	CAYNNNNRTG	1 cut(s)	125
SalI	GTCGAC	1 cut(s)	533
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	4 cut(s)	254, 315, 378, 1131
SatI	GCNGC	4 cut(s)	144, 296, 912, 978
Sau3AI	GATC	3 cut(s)	352, 527, 1168
Sau96I	GGNCC	4 cut(s)	13, 94, 424, 566
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	2 cut(s)	243, 971
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	2 cut(s)	291, 499
SfcI	CTRYAG	3 cut(s)	912, 972, 1014
SfuI	TTCGAA	2 cut(s)	631, 748
SinI	GGWCC	3 cut(s)	13, 94, 424
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	7 cut(s)	286, 375, 495, 704, 873, 1113, 1128
SsiI	CCGC	4 cut(s)	141, 323, 735, 925
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	3 cut(s)	111, 399, 428
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	277, 1078
TaiI	ACGT	2 cut(s)	453, 660
TaqI	TCGA	6 cut(s)	237, 534, 606, 631, 690, 748
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	7 cut(s)	286, 375, 495, 704, 873, 1113, 1128
TatI	WGTACW	2 cut(s)	31, 798
TfiI	GAWTC	2 cut(s)	933, 1089
Tru1I	TTAA	4 cut(s)	254, 315, 378, 1131
Tru9I	TTAA	4 cut(s)	254, 315, 378, 1131
TscAI	CASTG	3 cut(s)	127, 393, 1083
TseFI	GTSAC	2 cut(s)	329, 390
TseI	GCWGC	4 cut(s)	143, 295, 911, 977
Tsp45I	GTSAC	2 cut(s)	329, 390
TspDTI	ATGAA	4 cut(s)	467, 707, 770, 1081
TspGWI	ACGGA	2 cut(s)	181, 613
TspRI	CASTG	3 cut(s)	127, 393, 1083
Van91I	CCANNNNNTGG	1 cut(s)	1078
VpaK11BI	GGWCC	3 cut(s)	13, 94, 424
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	2 cut(s)	286, 1113
XmiI	GTMKAC	1 cut(s)	534
XmnI	GAANNNNTTC	4 cut(s)	103, 686, 993, 1065
XspI	CTAG	3 cut(s)	111, 399, 428
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.