Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012052

Physical Location & Seq

Genomic Coordinates Reverse (-)

41687511 .. 41695183

Gene Structure 7673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG232900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4572 bp

ATGGAGAAGAAGCAGAGCACTACGGGCAAGAACAATAAGAAGAAGATCTTCGGCAACACGGCGCTTCAATTAAACGATGTAGACGCTTCGTGCATGGTCGGCGGTATCGTCGAGAAAGGCTTTTCCGATAAGCCGGTTTTGGGGCCCGTTGCTCCGCCCCGGCCTAGCGTCCTTCACTTCCCTGCTGCTCGCCACCGCTCCGAGGGCCCGCATTGGAGTCCGGTGAATACTAAAATGGGTGGTGAGGAGGGTGAGGGTGATAGTGAGGATGATGAAGCTGTTATGGACTTTGATGTTGTAAAACCTTATGCAAAGCCGATAGTGAGGAAGAGTAAAAAAGACATGAACTTTAGCAAGAGGGTAGAGATGGAGGTTGATGAGAATAGGACAAGTACAGTTAGGGAAACCATGAGAGCTAGTGTTAGGAAGAATAGCTCGAATCAACTGCGTCACCGGACAAAGCCTGTGTTGGCTAACTTGAAGAATGAGCAGGAATCAGTGTTGGACAGCAATGACATGGAAATTGATGTGATCCCAAAGTCGCCTGCTGTTGATATTCGAGAAGAACAAGTGCCTGTTTCGCTTGAGAGCGAGATTGATGCGGAGAACCATGCTCGGTTGCGGGGAATGTCAACCGAGGAGATTGCACAGGCACAAGATGAGATAATGGGGAGATTGGACCCTGCATTACTCCAAGTACTCAAAAGGAGGGGTGAAGAGAAACTGAAGAAGGAAAGAACCTCCAGCTCAGATAACAAGGACCGAAAACCTTCCCCTAGTTCTCACACTGCTATGCCTCATGTAACCGCAGCCAATACCTCAAACCATACACGGAGTGATGGTTTAGTGCCGATTTCAGGCCAAGCCAAGGGCAAGCTGTGGAATGCTTGGAGTGAGAGAGTCGAGGCCGTTAGGGGATTAAGGTTTTCCTCAGATGGGACTGTTGTTGGAAATTCTTTGCAGCAGATGCCTCAAGTTAATCTGGTGGGGCGTGACTACCTGCGTACTGAGGGAGATCCTGGTGCTACTGGTTATACAATTAAAGAAGCAGTGTCACTCACTAGGAGTTTGATTGCAGGACAACGGGACCTAGCATTGGCTCTTCTTTCAAACGTGCTCAATAAGGCATTACAAAATATTCATCAAAACCATGTTCAAATTACCAGACAAGATGCTAATAAAGTTGACAGATCTGTTGACTGGGAGGCTATCTGGGCTTATGCACTTGGCCCAGAACCTGAACTTGTTTTAGCTCTCAGGATGTGTCTCGATGATAACCATAAATCCGTGGTTCGAATGTGTGCCAAAGTTATTTACTACGTATTGAGCTGTGATGTGAATGAGAACTTCTTCGATGTCTCGGAGGTAAAGTCTTTCTTTTGTATTCTTCCCACAATTTTGGTTCTATACATCTTTCTTTGTTCTTATTTCAGTTACATAAAGCTTGACATATCTTCCTTCCAGAAATTAGCACCTATTCATAAGGATACTTTTACCGCCCCTGTATTTCGAAGCAAACCAGAGATTGATGTTGGTTTCCTTCATGGTGGGTTCTGGAAGTACAATGCTAAACCTTCTAATGTTCTTGCTCTTGATGAGGATATTATTGATGATGAGATTGAAGGGAAGCGTACAATTCAGGATGACATTGTTGTTGCTGGACAAGATTTTGCTGCAGGTTTGGTGCGGATGGGAATCCTTCCAGCGCTTTGCTATCTTTTGGAGTCAGACCCTACAGCAGCTTTGGAAGAATACATTCTTTCTATACTTATTGCTATAGCAAGGCATTCCCCAAAATGTGCGAATGCAATTATGATTTGCGAAAGGCTTCTCCAAACAGTGGTCAGCAGATTCATTGCAAAAGACAATATAGAAATTCAGCCTTCTAAAATTAAGTCTGTTAGACTTCTAAAGGTGTTGGCACAATCTGATCGGAAGAGGTGTTTTGATTTTATAAAGAATGGGAGCTTCCAAACTCTGACGTGGCATTTGTATCAACCTGCATCCTTCCTTGACAATTGGGTAAAATCTGGAAAGGAAAAGTGTAGACTTTCATCAGCTCTGATAGTTGAACAACTGCGGTTTTGGAAGGTCTGCATTCAGCATGGATATTGTGTGTCATACTTCTCAGAAATTTTTCCTTACTTATGCCTGTGGCTGAATCCACCTATGCTTGAAAAACTTATAGAGAACGGTGTTCTTTGCGAGTTTGCTTCCATCTCTAAAGAGGCCTACCTTGTATTGGAGGCTTTGGCTAGAAGACTTCCAAATTTGTTCGCACAGAAGCATCACAGGAATCAAATCTCAGAGGATTCTGGTGATGACACTGATTTCTGGTCTTGGAGTCATGTTGGTCCAATGGTTGAAATAGCTCTGAAGTGGATGGTATGGAAGAATGATCCCAGTGTATGTAAATTGTTTGACAGGGAAGAACGAATTTCTGGTCATCTTGTTTCCCAAGATTTATCAGTGACTTCCTTGTTGTGGGTCTATTCAGCTGTCTTGCATATGCTTTCCAGAGTGCTTGAGAGAGTGATCCCAGATGACACTGTCCACTTGCATGAAAGTAGTAGTCTTGTGCCATGGCTTCCAGAGTTTGTTCCTAAAGTTGGCCTTGAAATTATTAAGAATGGGTTTGTTGGAATAGATTCTAATGCAGGTTGCTCCTTCATTGAGAAATTGTGTAATTTGAGACAGCAAGGTGATTATGAAACATCGTTGGCTACTGTATGTTGCTTACATGGGTTGCTGGGGATTATCATTACCATTGATAAGTTGATAACTTTAGCCAGGGCAAGCGTACAAACGCTTCCCCAAAATAATACTTCATCAAGAGAAGAGAAAATACTCAAGGACGGTATACTTAATGGGTCATTTGTTGAATTGAGAAGTGCGAAAAATATGTTTGTGAAGTTAGTTGCTTCAGAGTGGCACCTTGTGCAATCCATAGAAAAATTTGGTAGGGGAGGTCCTGCTCCTGGGGTGGGAGTTGGCTGGGGTGCTTCTGGTGGAGGATATTGGTCTGGTACTGTTTTGTTGGCCCAGGCAGATGCAAGGTTTCTCACTGACCTGATTGAAACGTTGAAAATTGTCCCTGATTTTGATATCCACACAGAAGAAGAAATGATGTTCATTGTACTGGCAATCAATTCATCTCTAGGAGTCTGTGTAACTGCTCGGCCAACAGATGGTACTTTTGTGAAAAAGGCAATAAATAGTTTGCTGGACGTCTCTGTTTTGAAGTATCTGGATATCTGTATTCGTCGTTTTCTCTCAAGTAGTAGAGCTAAGCTGTTCAATTGGGATGATAAAGAAGAGGATTACCTGCTCTTGAGTAGAACATTAGCTTCTCATTTCAGTAATAGATGGTTATCTGTAAAGAAAAAGCTTGAAGATAGTGACAGCAAGAATATATCATACAGTAAATCACTTAAGAAAGGCAAGAGTTCCCTCAACACCATATATGAGGACATAGACACATCAGGTATAACCAGTCAAGATTTGGTAGCAGAGTGGGCTCACCAGAGACTACCGCTACCTGTTTGCTGGTTTCTCAGTCCAGTCTCAACCCTTTGTGATGGCAAGACCGCTGGTCTTAAAAAATCTTCCAAGTTACAGGATCTCATGCAAGATCCAGGTGATTTTCTTGTAGTTGCTAGAGCTGGACTTTTCTTCCTTTTGGGTATTGAAGCACTGGCTAGTTTCCTACCTGCTGGCATCCACTCCCCCGTTAAGAGTGTACCGTTAGTTTGGAAATTGCATTCTCTGTCTGTACTCTTACTTGTTGGGATGGGCGTGCTTGAGGAGGAGAAGAGCCGGGTTAGTTATGAAGCTTTGCAAGATCTCTATGGGAATCTTCTTCATCAGGCAAGGTCACGTACCTTATCGTCAGAACCGAGAAATAAAAATAACTTGGAAATTCTGGCATTTGAATCAGAGATTCATGGGACATACTCAACATTTATTGAAACTCTTGTGGAGCAGTTTTCTGCTGTATCTTATGGTGATCTGATTTATGGCCGGCAAGTTGCAGTTTATCTTCATCGTTGTGTTGAAGCTCCTGTGCGACTTGCTGCCTGGAATACACTAACTAATTCTCGTGTTCTTGAACTTCTGCCACCTTTAGAGAATTGCTTTACTGATGCAGAGGGGTACCTTGAACCTGTTGAGGATAATTCTGATAATTTGTTGGCTTACGTGAAATCATGGACTTCTGGTGCCCTGGACAGGGCAGCAAGTCGAGGATCACTTGCATATACGCTTGTTCTCCATCACCTTTCAGCTTTCATATTTGAGTCGTACACAGGTGATAAATTATTGCTTCGGAATAAGCTCTCAAGGTCTCTGTTGCAAGATTTCTCCTCAAAGCAACACCATGAGGCTATGATGTTGAATCTTATTCAATATAGCAAGCCATCTGCATCACAAACAATCAAGCAAGAGGATGGAGCACCAGCAGGGACTGCCATTGCGAAGAGGGTCGAGTTATTAATTGAAGCTTGTGAAGGAAGTTCTTCACTTTTAAATGCTGTCGAGCGGCTGAAGTCTTCCTTAAAGATCAGTCAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0030154 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048869 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP1_C RPAP1_N

Protein Analysis

1523

Amino Acids

170.04

Weight (kDa)

6.33

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPAP1_N	PF08621	198 - 241	5.3e-17	RPAP1-like, N-terminal
RPAP1_C	PF08620	307 - 376	1.5e-11	RPAP1-like, C-terminal
TPR_RPAP1	PF25766	1301 - 1433	4.2e-15	RNA polymerase II-associated protein 1, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38440
fragaria_vesca	FvH4_2g15920 FvH4_2g15920
malus_domestica	MD05G1128200.v1.1 MD10G1131500.v1.1
prunus_persica	Prupe.8G172300_v2.0.a1
pyrus_communis	pycom05g12410 pycom10g11260
rosa_chinensis	RchiOBHm_Chr6g0279371
rosa_laevigata	RLG00000013150
rosa_multiflora	Rmu_sc0026652.1_g000002 Rmu_ssc0000349.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188950
rosa_rugosa	Rorug06G0124200
rosa_samantha	Rh6AG232900 Rh6BG237300 Rh6CG239400 Rh6DG231100
rosa_wichuraiana	Rw6G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1955
AatII	GACGTC	1 cut(s)	3231
Acc36I	ACCTGC	6 cut(s)	1008, 1667, 2008, 2648, 3333, 3718
Acc65I	GGTACC	1 cut(s)	4152
AccB1I	GGYRCC	3 cut(s)	2931, 4152, 4217
AccB7I	CCANNNNNTGG	2 cut(s)	1840, 3188
AccBSI	CCGCTC	2 cut(s)	198, 4537
AccI	GTMKAC	3 cut(s)	81, 2047, 2860
AclI	AACGTT	1 cut(s)	3080
AclWI	GGATC	7 cut(s)	526, 1010, 2393, 2530, 3626, 3627, 4252
AcoI	YGGCCR	2 cut(s)	3179, 4018
AcsI	RAATTY	7 cut(s)	952, 1875, 2133, 2269, 2436, 2954, 3918
AcuI	CTGAAG	4 cut(s)	746, 2396, 2907, 4562
AcyI	GRCGYC	1 cut(s)	3228
AdeI	CACNNNGTG	2 cut(s)	836, 2938
AfeI	AGCGCT	1 cut(s)	1707
AflII	CTTAAG	1 cut(s)	3431
AhdI	GACNNNNNGTC	1 cut(s)	3591
AjiI	CACGTC	1 cut(s)	1983
AjnI	CCWGG	7 cut(s)	1018, 2789, 2977, 3042, 3634, 4076, 4221
Alw21I	GWGCWC	3 cut(s)	20, 1119, 4453
Alw26I	GTCTC	7 cut(s)	1271, 1363, 2686, 3235, 3520, 3568, 4347
AlwI	GGATC	7 cut(s)	526, 1010, 2393, 2530, 3626, 3627, 4252
AlwNI	CAGNNNCTG	2 cut(s)	1238, 4463
Aor51HI	AGCGCT	1 cut(s)	1707
ApaI	GGGCCC	2 cut(s)	147, 209
ApeKI	GCWGC	7 cut(s)	185, 809, 961, 1673, 1739, 4073, 4232
ApoI	RAATTY	7 cut(s)	952, 1875, 2133, 2269, 2436, 2954, 3918
ArsI	GACNNNNNNTTYG	4 cut(s)	1972, 2004, 2428, 2460
AseI	ATTAAT	1 cut(s)	4490
Asp700I	GAANNNNTTC	8 cut(s)	47, 769, 1349, 1755, 1827, 2136, 2647, 4513
Asp718I	GGTACC	1 cut(s)	4152
AspLEI	GCGC	2 cut(s)	64, 1708
AsuC2I	CCSGG	2 cut(s)	160, 3818
AsuII	TTCGAA	2 cut(s)	1294, 1510
AvaII	GGWCC	5 cut(s)	679, 760, 1087, 2354, 2969
BaeGI	GKGCMC	3 cut(s)	147, 209, 4222
BaeI	ACNNNNGTAYC	2 cut(s)	3183, 3216
BanI	GGYRCC	3 cut(s)	2931, 4152, 4217
BanII	GRGCYC	3 cut(s)	147, 209, 3520
BarI	GAAGNNNNNNTAC	4 cut(s)	2793, 2825, 2829, 2861
BauI	CACGAG	1 cut(s)	4098
BbsI	GAAGAC	2 cut(s)	2266, 4539
Bbv12I	GWGCWC	3 cut(s)	20, 1119, 4453
BbvI	GCAGC	7 cut(s)	172, 821, 973, 1660, 1751, 4060, 4244
BceAI	ACGGC	2 cut(s)	75, 893
BcgI	CGANNNNNNTGC	6 cut(s)	427, 461, 581, 615, 626, 660
BciT130I	CCWGG	7 cut(s)	1020, 2791, 2979, 3044, 3636, 4078, 4223
BciVI	GTATCC	1 cut(s)	1480
BcnI	CCSGG	2 cut(s)	160, 3818
BcoDI	GTCTC	7 cut(s)	1271, 1363, 2686, 3235, 3520, 3568, 4347
BfaI	CTAG	9 cut(s)	165, 417, 777, 1062, 1091, 2256, 3158, 3657, 3699
BfmI	CTRYAG	3 cut(s)	1674, 1734, 1776
BfoI	RGCGCY	2 cut(s)	65, 1709
BfrI	CTTAAG	1 cut(s)	3431
BfuAI	ACCTGC	6 cut(s)	1008, 1667, 2008, 2648, 3333, 3718
BfuI	GTATCC	1 cut(s)	1480
BglII	AGATCT	3 cut(s)	45, 1190, 3841
BisI	GCNGC	8 cut(s)	186, 810, 962, 1674, 1740, 4074, 4233, 4538
BlpI	GCTNAGC	1 cut(s)	3288
BlsI	GCNGC	8 cut(s)	187, 811, 963, 1675, 1741, 4075, 4234, 4539
BmcAI	AGTACT	1 cut(s)	699
Bme1390I	CCNGG	9 cut(s)	160, 1020, 2791, 2979, 3044, 3636, 3818, 4078, 4223
Bme18I	GGWCC	5 cut(s)	679, 760, 1087, 2354, 2969
BmeRI	GACNNNNNGTC	1 cut(s)	3591
BmgBI	CACGTC	1 cut(s)	1983
BmiI	GGNNCC	8 cut(s)	144, 145, 207, 681, 1088, 2933, 4154, 4219
BmrFI	CCNGG	9 cut(s)	160, 1020, 2791, 2979, 3044, 3636, 3818, 4078, 4223
BmrI	ACTGGG	2 cut(s)	1210, 2397
BmsI	GCATC	9 cut(s)	589, 957, 1162, 2012, 2296, 3040, 3726, 4132, 4430
BmuI	ACTGGG	2 cut(s)	1210, 2397
BpiI	GAAGAC	2 cut(s)	2266, 4539
BpmI	CTGGAG	1 cut(s)	727
Bpu1102I	GCTNAGC	1 cut(s)	3288
Bpu14I	TTCGAA	2 cut(s)	1294, 1510
BpuEI	CTTGAG	8 cut(s)	605, 957, 2546, 2834, 3259, 3352, 3821, 4321
BpuMI	CCSGG	2 cut(s)	160, 3818
BsaAI	YACGTR	3 cut(s)	1321, 3878, 4198
BsaBI	GATNNNNATC	2 cut(s)	1694, 3370
BsaHI	GRCGYC	1 cut(s)	3228
BsaI	GGTCTC	1 cut(s)	4347
BsaWI	WCCGGW	2 cut(s)	220, 453
BsaXI	ACNNNNNCTCC	6 cut(s)	826, 856, 1355, 1385, 3153, 3183
Bse118I	RCCGGY	2 cut(s)	133, 4020
Bse1I	ACTGG	7 cut(s)	1033, 1205, 2403, 3144, 3492, 3560, 3699
Bse3DI	GCAATG	3 cut(s)	517, 1854, 4467
Bse8I	GATNNNNATC	2 cut(s)	1694, 3370
BseBI	CCWGG	7 cut(s)	1020, 2791, 2979, 3044, 3636, 4078, 4223
BseJI	GATNNNNATC	2 cut(s)	1694, 3370
BseMI	GCAATG	3 cut(s)	517, 1854, 4467
BseMII	CTCAG	7 cut(s)	762, 945, 999, 1270, 2142, 2319, 3568
BseNI	ACTGG	7 cut(s)	1033, 1205, 2403, 3144, 3492, 3560, 3699
BseRI	GAGGAG	5 cut(s)	260, 653, 3818, 3821, 4351
BseSI	GKGCMC	3 cut(s)	147, 209, 4222
BseXI	GCAGC	7 cut(s)	172, 821, 973, 1660, 1751, 4060, 4244
BseYI	CCCAGC	2 cut(s)	2749, 2994
BshNI	GGYRCC	3 cut(s)	2931, 4152, 4217
BsiHKAI	GWGCWC	3 cut(s)	20, 1119, 4453
BsiSI	CCGG	6 cut(s)	134, 160, 221, 454, 3817, 4021
BslFI	GGGAC	5 cut(s)	952, 1100, 3077, 3961, 4474
BsmAI	GTCTC	7 cut(s)	1271, 1363, 2686, 3235, 3520, 3568, 4347
BsmBI	CGTCTC	1 cut(s)	3235
BsmFI	GGGAC	5 cut(s)	952, 1100, 3077, 3961, 4474
BsmI	GAATGC	5 cut(s)	889, 1786, 1810, 2097, 3760
Bso31I	GGTCTC	1 cut(s)	4347
Bsp119I	TTCGAA	2 cut(s)	1294, 1510
Bsp120I	GGGCCC	2 cut(s)	143, 205
Bsp1286I	GDGCHC	7 cut(s)	20, 147, 209, 1119, 3520, 4222, 4453
Bsp1720I	GCTNAGC	1 cut(s)	3288
Bsp19I	CCATGG	1 cut(s)	2582
BspCNI	CTCAG	7 cut(s)	761, 944, 1000, 1269, 2141, 2318, 3567
BspLI	GGNNCC	8 cut(s)	144, 145, 207, 681, 1088, 2933, 4154, 4219
BspMAI	CTGCAG	1 cut(s)	1678
BspMI	ACCTGC	6 cut(s)	1008, 1667, 2008, 2648, 3333, 3718
BspPI	GGATC	7 cut(s)	526, 1010, 2393, 2530, 3626, 3627, 4252
BspQI	GCTCTTC	2 cut(s)	1107, 3806
BspT104I	TTCGAA	2 cut(s)	1294, 1510
BspT107I	GGYRCC	3 cut(s)	2931, 4152, 4217
BspTI	CTTAAG	1 cut(s)	3431
BspTNI	GGTCTC	1 cut(s)	4347
BsrBI	CCGCTC	2 cut(s)	198, 4537
BsrDI	GCAATG	3 cut(s)	517, 1854, 4467
BsrFI	RCCGGY	2 cut(s)	133, 4020
BsrI	ACTGG	7 cut(s)	1033, 1205, 2403, 3144, 3492, 3560, 3699
BssAI	RCCGGY	2 cut(s)	133, 4020
BssNAI	GTATAC	1 cut(s)	2861
BssNI	GRCGYC	1 cut(s)	3228
BssSI	CACGAG	1 cut(s)	4098
BssT1I	CCWWGG	2 cut(s)	867, 2582
Bst1107I	GTATAC	1 cut(s)	2861
Bst2BI	CACGAG	1 cut(s)	4098
Bst2UI	CCWGG	7 cut(s)	1020, 2791, 2979, 3044, 3636, 4078, 4223
Bst6I	CTCTTC	8 cut(s)	323, 711, 1107, 1931, 2832, 3309, 3806, 4469
BstACI	GRCGYC	1 cut(s)	3228
BstAFI	CTTAAG	1 cut(s)	3431
BstAPI	GCANNNNNTGC	3 cut(s)	967, 2938, 4463
BstBAI	YACGTR	3 cut(s)	1321, 3878, 4198
BstBI	TTCGAA	2 cut(s)	1294, 1510
BstC8I	GCNNGC	9 cut(s)	190, 209, 546, 875, 2797, 3715, 3797, 4022, 4412
BstDEI	CTNAG	8 cut(s)	748, 931, 1008, 1256, 2128, 2305, 3288, 3554
BstDSI	CCRYGG	2 cut(s)	1287, 2582
BstH2I	RGCGCY	2 cut(s)	65, 1709
BstHHI	GCGC	2 cut(s)	64, 1708
BstMAI	GTCTC	7 cut(s)	1271, 1363, 2686, 3235, 3520, 3568, 4347
BstMWI	GCNNNNNNNGC	9 cut(s)	24, 99, 204, 580, 967, 1214, 2938, 3515, 4463
BstNI	CCWGG	7 cut(s)	1020, 2791, 2979, 3044, 3636, 4078, 4223
BstSCI	CCNGG	9 cut(s)	158, 1018, 2789, 2977, 3042, 3634, 3816, 4076, 4221
BstSFI	CTRYAG	3 cut(s)	1674, 1734, 1776
BstSLI	GKGCMC	3 cut(s)	147, 209, 4222
BstSNI	TACGTA	1 cut(s)	1321
BstV1I	GCAGC	7 cut(s)	172, 821, 973, 1660, 1751, 4060, 4244
BstV2I	GAAGAC	2 cut(s)	2266, 4539
BstX2I	RGATCY	6 cut(s)	45, 1015, 1190, 3619, 3631, 3841
BstXI	CCANNNNNNTGG	1 cut(s)	1399
BstYI	RGATCY	6 cut(s)	45, 1015, 1190, 3619, 3631, 3841
BstZ17I	GTATAC	1 cut(s)	2861
BsuI	GTATCC	1 cut(s)	1480
BtgI	CCRYGG	2 cut(s)	1287, 2582
BtrI	CACGTC	1 cut(s)	1983
BtsI	GCAGTG	2 cut(s)	786, 1056
BveI	ACCTGC	6 cut(s)	1008, 1667, 2008, 2648, 3333, 3718
Cac8I	GCNNGC	9 cut(s)	190, 209, 546, 875, 2797, 3715, 3797, 4022, 4412
CaiI	CAGNNNCTG	2 cut(s)	1238, 4463
CfoI	GCGC	2 cut(s)	64, 1708
Cfr10I	RCCGGY	2 cut(s)	133, 4020
CseI	GACGC	3 cut(s)	92, 157, 437
DdeI	CTNAG	8 cut(s)	748, 931, 1008, 1256, 2128, 2305, 3288, 3554
DraI	TTTAAA	1 cut(s)	4524
DraIII	CACNNNGTG	2 cut(s)	836, 2938
DriI	GACNNNNNGTC	1 cut(s)	3591
EaeI	YGGCCR	2 cut(s)	3179, 4018
Eam1104I	CTCTTC	8 cut(s)	323, 711, 1107, 1931, 2832, 3309, 3806, 4469
Eam1105I	GACNNNNNGTC	1 cut(s)	3591
EarI	CTCTTC	8 cut(s)	323, 711, 1107, 1931, 2832, 3309, 3806, 4469
EciI	GGCGGA	1 cut(s)	144
Eco105I	TACGTA	1 cut(s)	1321
Eco130I	CCWWGG	2 cut(s)	867, 2582
Eco147I	AGGCCT	1 cut(s)	2231
Eco24I	GRGCYC	3 cut(s)	147, 209, 3520
Eco31I	GGTCTC	1 cut(s)	4347
Eco32I	GATATC	2 cut(s)	3106, 3253
Eco47I	GGWCC	5 cut(s)	679, 760, 1087, 2354, 2969
Eco47III	AGCGCT	1 cut(s)	1707
Eco57I	CTGAAG	4 cut(s)	746, 2396, 2907, 4562
EcoO109I	RGGNCCY	4 cut(s)	143, 205, 1087, 2969
EcoRII	CCWGG	7 cut(s)	1018, 2789, 2977, 3042, 3634, 4076, 4221
EcoRV	GATATC	2 cut(s)	3106, 3253
EcoT14I	CCWWGG	2 cut(s)	867, 2582
EcoT38I	GRGCYC	3 cut(s)	147, 209, 3520
ErhI	CCWWGG	2 cut(s)	867, 2582
Esp3I	CGTCTC	1 cut(s)	3235
FalI	AAGNNNNNCTT	8 cut(s)	32, 64, 1361, 1393, 2598, 2630, 4535, 4567
FaqI	GGGAC	5 cut(s)	952, 1100, 3077, 3961, 4474
FauI	CCCGC	2 cut(s)	216, 615
FauNDI	CATATG	1 cut(s)	2508
FblI	GTMKAC	3 cut(s)	81, 2047, 2860
Fnu4HI	GCNGC	8 cut(s)	186, 810, 962, 1674, 1740, 4074, 4233, 4538
FriOI	GRGCYC	3 cut(s)	147, 209, 3520
Fsp4HI	GCNGC	8 cut(s)	186, 810, 962, 1674, 1740, 4074, 4233, 4538
FspBI	CTAG	9 cut(s)	165, 417, 777, 1062, 1091, 2256, 3158, 3657, 3699
GlaI	GCGC	2 cut(s)	63, 1707
GluI	GCNGC	8 cut(s)	186, 810, 962, 1674, 1740, 4074, 4233, 4538
GsaI	CCCAGC	2 cut(s)	2753, 2998
GsuI	CTGGAG	1 cut(s)	727
HaeII	RGCGCY	2 cut(s)	65, 1709
HapII	CCGG	6 cut(s)	134, 160, 221, 454, 3817, 4021
HgaI	GACGC	3 cut(s)	92, 157, 437
HhaI	GCGC	2 cut(s)	64, 1708
Hin1I	GRCGYC	1 cut(s)	3228
Hin6I	GCGC	2 cut(s)	62, 1706
HinP1I	GCGC	2 cut(s)	62, 1706
HincII	GTYRAC	3 cut(s)	633, 1186, 1198
HindII	GTYRAC	3 cut(s)	633, 1186, 1198
HindIII	AAGCTT	4 cut(s)	1442, 3386, 3831, 4497
HpaII	CCGG	6 cut(s)	134, 160, 221, 454, 3817, 4021
Hpy166II	GTNNAC	9 cut(s)	82, 633, 1186, 1198, 2048, 2554, 2861, 3740, 4302
Hpy8I	GTNNAC	9 cut(s)	82, 633, 1186, 1198, 2048, 2554, 2861, 3740, 4302
Hpy99I	CGWCG	2 cut(s)	113, 3267
HpyCH4IV	ACGT	7 cut(s)	1113, 1320, 1982, 3080, 3228, 3877, 4197
HpyF10VI	GCNNNNNNNGC	9 cut(s)	24, 99, 204, 580, 967, 1214, 2938, 3515, 4463
HpyF3I	CTNAG	8 cut(s)	748, 931, 1008, 1256, 2128, 2305, 3288, 3554
HpySE526I	ACGT	7 cut(s)	1113, 1320, 1982, 3080, 3228, 3877, 4197
Hsp92I	GRCGYC	1 cut(s)	3228
HspAI	GCGC	2 cut(s)	62, 1706
KpnI	GGTACC	1 cut(s)	4156
KroI	GCCGGC	1 cut(s)	4020
KroNI	GCCGGC	1 cut(s)	4022
LguI	GCTCTTC	2 cut(s)	1107, 3806
LmnI	GCTCC	8 cut(s)	157, 203, 1965, 2669, 2980, 3979, 4063, 4448
Lsp1109I	GCAGC	7 cut(s)	172, 821, 973, 1660, 1751, 4060, 4244
LweI	GCATC	9 cut(s)	589, 957, 1162, 2012, 2296, 3040, 3726, 4132, 4430
MaeI	CTAG	9 cut(s)	165, 417, 777, 1062, 1091, 2256, 3158, 3657, 3699
MaeII	ACGT	7 cut(s)	1113, 1320, 1982, 3080, 3228, 3877, 4197
MbiI	CCGCTC	2 cut(s)	198, 4537
MfeI	CAATTG	2 cut(s)	2017, 3298
MflI	RGATCY	6 cut(s)	45, 1015, 1190, 3619, 3631, 3841
MhlI	GDGCHC	7 cut(s)	20, 147, 209, 1119, 3520, 4222, 4453
MlyI	GAGTC	6 cut(s)	226, 909, 1733, 2353, 3171, 4304
MmeI	TCCRAC	3 cut(s)	483, 928, 2620
MroNI	GCCGGC	1 cut(s)	4020
MroXI	GAANNNNTTC	8 cut(s)	47, 769, 1349, 1755, 1827, 2136, 2647, 4513
MslI	CAYNNNNRTG	3 cut(s)	791, 2559, 4047
MspA1I	CMGCKG	2 cut(s)	2498, 3590
MspCI	CTTAAG	1 cut(s)	3431
MspI	CCGG	6 cut(s)	134, 160, 221, 454, 3817, 4021
MspR9I	CCNGG	9 cut(s)	160, 1020, 2791, 2979, 3044, 3636, 3818, 4078, 4223
MunI	CAATTG	2 cut(s)	2017, 3298
Mva1269I	GAATGC	5 cut(s)	889, 1786, 1810, 2097, 3760
MvaI	CCWGG	7 cut(s)	1020, 2791, 2979, 3044, 3636, 4078, 4223
MwoI	GCNNNNNNNGC	9 cut(s)	24, 99, 204, 580, 967, 1214, 2938, 3515, 4463
NaeI	GCCGGC	1 cut(s)	4022
NciI	CCSGG	2 cut(s)	160, 3818
NcoI	CCATGG	1 cut(s)	2582
NdeI	CATATG	1 cut(s)	2508
NgoMIV	GCCGGC	1 cut(s)	4020
NlaIV	GGNNCC	8 cut(s)	144, 145, 207, 681, 1088, 2933, 4154, 4219
NmeAIII	GCCGAG	1 cut(s)	3157
NmuCI	GTSAC	6 cut(s)	449, 992, 1053, 2470, 3398, 3873
NspV	TTCGAA	2 cut(s)	1294, 1510
PceI	AGGCCT	1 cut(s)	2231
PciSI	GCTCTTC	2 cut(s)	1107, 3806
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 3893
PctI	GAATGC	5 cut(s)	889, 1786, 1810, 2097, 3760
PdiI	GCCGGC	1 cut(s)	4022
PdmI	GAANNNNTTC	8 cut(s)	47, 769, 1349, 1755, 1827, 2136, 2647, 4513
PflFI	GACNNNGTC	1 cut(s)	2549
PflMI	CCANNNNNTGG	2 cut(s)	1840, 3188
PkrI	GCNGC	8 cut(s)	187, 811, 963, 1675, 1741, 4075, 4234, 4539
PleI	GAGTC	6 cut(s)	225, 908, 1732, 2352, 3170, 4303
PpsI	GAGTC	6 cut(s)	225, 908, 1732, 2352, 3170, 4303
Ppu21I	YACGTR	3 cut(s)	1321, 3878, 4198
PpuMI	RGGWCCY	2 cut(s)	1087, 2969
PshBI	ATTAAT	1 cut(s)	4490
PsiI	TTATAA	1 cut(s)	1955
Psp1406I	AACGTT	1 cut(s)	3080
Psp5II	RGGWCCY	2 cut(s)	1087, 2969
Psp6I	CCWGG	7 cut(s)	1018, 2789, 2977, 3042, 3634, 4076, 4221
PspFI	CCCAGC	2 cut(s)	2749, 2994
PspGI	CCWGG	7 cut(s)	1018, 2789, 2977, 3042, 3634, 4076, 4221
PspN4I	GGNNCC	8 cut(s)	144, 145, 207, 681, 1088, 2933, 4154, 4219
PspOMI	GGGCCC	2 cut(s)	143, 205
PspPPI	RGGWCCY	2 cut(s)	1087, 2969
PstI	CTGCAG	1 cut(s)	1678
PstNI	CAGNNNCTG	2 cut(s)	1238, 4463
PsuI	RGATCY	6 cut(s)	45, 1015, 1190, 3619, 3631, 3841
PsyI	GACNNNGTC	1 cut(s)	2549
PvuII	CAGCTG	1 cut(s)	2498
RseI	CAYNNNNRTG	3 cut(s)	791, 2559, 4047
SapI	GCTCTTC	2 cut(s)	1107, 3806
SatI	GCNGC	8 cut(s)	186, 810, 962, 1674, 1740, 4074, 4233, 4538
ScaI	AGTACT	1 cut(s)	699
SchI	GAGTC	6 cut(s)	226, 909, 1733, 2353, 3171, 4304
ScrFI	CCNGG	9 cut(s)	160, 1020, 2791, 2979, 3044, 3636, 3818, 4078, 4223
SduI	GDGCHC	7 cut(s)	20, 147, 209, 1119, 3520, 4222, 4453
SfaNI	GCATC	9 cut(s)	589, 957, 1162, 2012, 2296, 3040, 3726, 4132, 4430
SfcI	CTRYAG	3 cut(s)	1674, 1734, 1776
SfuI	TTCGAA	2 cut(s)	1294, 1510
SinI	GGWCC	5 cut(s)	679, 760, 1087, 2354, 2969
SmiMI	CAYNNNNRTG	3 cut(s)	791, 2559, 4047
SmlI	CTYRAG	9 cut(s)	584, 972, 2525, 2849, 3274, 3331, 3431, 3800, 4336
SmoI	CTYRAG	9 cut(s)	584, 972, 2525, 2849, 3274, 3331, 3431, 3800, 4336
SnaBI	TACGTA	1 cut(s)	1321
SseBI	AGGCCT	1 cut(s)	2231
SspI	AATATT	1 cut(s)	1138
SspMI	CTAG	9 cut(s)	165, 417, 777, 1062, 1091, 2256, 3158, 3657, 3699
StuI	AGGCCT	1 cut(s)	2231
StyD4I	CCNGG	9 cut(s)	158, 1018, 2789, 2977, 3042, 3634, 3816, 4076, 4221
StyI	CCWWGG	2 cut(s)	867, 2582
TaiI	ACGT	7 cut(s)	1116, 1323, 1985, 3083, 3231, 3880, 4200
TaqII	GACCGA	1 cut(s)	777
TatI	WGTACW	5 cut(s)	392, 697, 1560, 3136, 3772
TauI	GCSGC	1 cut(s)	4540
TseFI	GTSAC	6 cut(s)	449, 992, 1053, 2470, 3398, 3873
TseI	GCWGC	7 cut(s)	185, 809, 961, 1673, 1739, 4073, 4232
Tsp45I	GTSAC	6 cut(s)	449, 992, 1053, 2470, 3398, 3873
TspGWI	ACGGA	2 cut(s)	847, 1276
Tth111I	GACNNNGTC	1 cut(s)	2549
Van91I	CCANNNNNTGG	2 cut(s)	1840, 3188
Vha464I	CTTAAG	1 cut(s)	3431
VpaK11BI	GGWCC	5 cut(s)	679, 760, 1087, 2354, 2969
VspI	ATTAAT	1 cut(s)	4490
XapI	RAATTY	7 cut(s)	952, 1875, 2133, 2269, 2436, 2954, 3918
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3499
XmiI	GTMKAC	3 cut(s)	81, 2047, 2860
XmnI	GAANNNNTTC	8 cut(s)	47, 769, 1349, 1755, 1827, 2136, 2647, 4513
XspI	CTAG	9 cut(s)	165, 417, 777, 1062, 1091, 2256, 3158, 3657, 3699
ZraI	GACGTC	1 cut(s)	3229
ZrmI	AGTACT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.