RPAP1-like, N-terminal
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38440 |
| fragaria_vesca | FvH4_2g15920 FvH4_2g15920 |
| malus_domestica | MD05G1128200.v1.1 MD10G1131500.v1.1 |
| prunus_persica | Prupe.8G172300_v2.0.a1 |
| pyrus_communis | pycom05g12410 pycom10g11260 |
| rosa_chinensis | RchiOBHm_Chr6g0279371 |
| rosa_laevigata | RLG00000013150 |
| rosa_multiflora | Rmu_sc0026652.1_g000002 Rmu_ssc0000349.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00188950 |
| rosa_rugosa | Rorug06G0124200 |
| rosa_samantha | Rh6AG232900 Rh6BG237300 Rh6CG239400 Rh6DG231100 |
| rosa_wichuraiana | Rw6G020340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1955 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1193 |
| AatII | GACGTC | 1 cut(s) | 3231 |
| Acc36I | ACCTGC | 6 cut(s) | 1008, 1667, 2008, 2648, 3333, 3718 |
| Acc65I | GGTACC | 1 cut(s) | 4152 |
| AccB1I | GGYRCC | 3 cut(s) | 2931, 4152, 4217 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1840, 3188 |
| AccBSI | CCGCTC | 2 cut(s) | 198, 4537 |
| AccI | GTMKAC | 4 cut(s) | 81, 1197, 2047, 2860 |
| AclI | AACGTT | 1 cut(s) | 3080 |
| AclWI | GGATC | 7 cut(s) | 526, 1010, 2393, 2530, 3626, 3627, 4252 |
| AcoI | YGGCCR | 1 cut(s) | 4018 |
| AcsI | RAATTY | 7 cut(s) | 952, 1875, 2133, 2269, 2436, 2954, 3918 |
| AcuI | CTGAAG | 5 cut(s) | 746, 2396, 2769, 2907, 4562 |
| AcyI | GRCGYC | 1 cut(s) | 3228 |
| AdeI | CACNNNGTG | 2 cut(s) | 836, 2938 |
| AfeI | AGCGCT | 1 cut(s) | 1707 |
| AflII | CTTAAG | 2 cut(s) | 2864, 3431 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3591 |
| AhlI | ACTAGT | 1 cut(s) | 416 |
| AjiI | CACGTC | 1 cut(s) | 1983 |
| AjnI | CCWGG | 7 cut(s) | 1018, 2789, 2977, 3042, 3634, 4076, 4221 |
| Alw21I | GWGCWC | 3 cut(s) | 20, 616, 1119 |
| Alw26I | GTCTC | 5 cut(s) | 1363, 2686, 3235, 3520, 4347 |
| AlwI | GGATC | 7 cut(s) | 526, 1010, 2393, 2530, 3626, 3627, 4252 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1238, 4463 |
| Ama87I | CYCGRG | 1 cut(s) | 4481 |
| Aor51HI | AGCGCT | 1 cut(s) | 1707 |
| ApaI | GGGCCC | 2 cut(s) | 147, 209 |
| ApeKI | GCWGC | 7 cut(s) | 185, 809, 1025, 1673, 1739, 4073, 4232 |
| ApoI | RAATTY | 7 cut(s) | 952, 1875, 2133, 2269, 2436, 2954, 3918 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1972, 2004, 2428, 2460 |
| AseI | ATTAAT | 1 cut(s) | 4490 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 47, 769, 1349, 1755, 1827, 2136, 2647, 4513 |
| Asp718I | GGTACC | 1 cut(s) | 4152 |
| AspLEI | GCGC | 2 cut(s) | 64, 1708 |
| AsuC2I | CCSGG | 2 cut(s) | 160, 3818 |
| AsuII | TTCGAA | 2 cut(s) | 1294, 1510 |
| AvaI | CYCGRG | 1 cut(s) | 4481 |
| AvaII | GGWCC | 6 cut(s) | 679, 760, 1087, 2354, 2969, 3179 |
| BaeGI | GKGCMC | 3 cut(s) | 147, 209, 4222 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3183, 3216 |
| BanI | GGYRCC | 3 cut(s) | 2931, 4152, 4217 |
| BanII | GRGCYC | 3 cut(s) | 147, 209, 3520 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2793, 2825, 2829, 2861 |
| BauI | CACGAG | 1 cut(s) | 4098 |
| BbsI | GAAGAC | 2 cut(s) | 2266, 4539 |
| Bbv12I | GWGCWC | 3 cut(s) | 20, 616, 1119 |
| BbvI | GCAGC | 7 cut(s) | 172, 821, 1012, 1660, 1751, 4060, 4219 |
| BceAI | ACGGC | 2 cut(s) | 75, 893 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 427, 461, 626, 660 |
| BciT130I | CCWGG | 7 cut(s) | 1020, 2791, 2979, 3044, 3636, 4078, 4223 |
| BciVI | GTATCC | 2 cut(s) | 1480, 3728 |
| BcnI | CCSGG | 2 cut(s) | 160, 3818 |
| BcoDI | GTCTC | 5 cut(s) | 1363, 2686, 3235, 3520, 4347 |
| BcuI | ACTAGT | 1 cut(s) | 416 |
| BfaI | CTAG | 7 cut(s) | 417, 777, 1062, 1091, 3158, 3657, 3699 |
| BfmI | CTRYAG | 3 cut(s) | 1674, 1734, 1776 |
| BfoI | RGCGCY | 2 cut(s) | 65, 1709 |
| BfrI | CTTAAG | 2 cut(s) | 2864, 3431 |
| BfuAI | ACCTGC | 6 cut(s) | 1008, 1667, 2008, 2648, 3333, 3718 |
| BfuI | GTATCC | 2 cut(s) | 1480, 3728 |
| BglII | AGATCT | 2 cut(s) | 45, 3841 |
| BisI | GCNGC | 8 cut(s) | 186, 810, 1026, 1674, 1740, 4074, 4233, 4538 |
| BlpI | GCTNAGC | 2 cut(s) | 1569, 3288 |
| BlsI | GCNGC | 8 cut(s) | 187, 811, 1027, 1675, 1741, 4075, 4234, 4539 |
| BmcAI | AGTACT | 1 cut(s) | 699 |
| Bme1390I | CCNGG | 9 cut(s) | 160, 1020, 2791, 2979, 3044, 3636, 3818, 4078, 4223 |
| Bme18I | GGWCC | 6 cut(s) | 679, 760, 1087, 2354, 2969, 3179 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3591 |
| BmeT110I | CYCGRG | 1 cut(s) | 4481 |
| BmgBI | CACGTC | 1 cut(s) | 1983 |
| BmiI | GGNNCC | 9 cut(s) | 144, 145, 207, 681, 1088, 2345, 2933, 4154, 4219 |
| BmrFI | CCNGG | 9 cut(s) | 160, 1020, 2791, 2979, 3044, 3636, 3818, 4078, 4223 |
| BmrI | ACTGGG | 4 cut(s) | 1210, 2029, 2397, 2759 |
| BmsI | GCATC | 9 cut(s) | 589, 957, 1162, 2012, 2296, 2314, 3040, 4132, 4430 |
| BmuI | ACTGGG | 4 cut(s) | 1210, 2029, 2397, 2759 |
| BpiI | GAAGAC | 2 cut(s) | 2266, 4539 |
| BpmI | CTGGAG | 1 cut(s) | 727 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1569, 3288 |
| Bpu14I | TTCGAA | 2 cut(s) | 1294, 1510 |
| BpuEI | CTTGAG | 8 cut(s) | 605, 957, 2546, 2834, 3259, 3352, 3821, 4321 |
| BpuMI | CCSGG | 2 cut(s) | 160, 3818 |
| BsaAI | YACGTR | 2 cut(s) | 3878, 4198 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1694, 3370 |
| BsaHI | GRCGYC | 1 cut(s) | 3228 |
| BsaI | GGTCTC | 1 cut(s) | 4347 |
| BsaWI | WCCGGW | 3 cut(s) | 220, 453, 1519 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 826, 856, 1355, 1385, 3153, 3183 |
| Bse118I | RCCGGY | 2 cut(s) | 133, 4020 |
| Bse1I | ACTGG | 7 cut(s) | 1205, 2024, 2403, 2754, 3144, 3492, 3699 |
| Bse3DI | GCAATG | 2 cut(s) | 1854, 4467 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1694, 3370 |
| BseBI | CCWGG | 7 cut(s) | 1020, 2791, 2979, 3044, 3636, 4078, 4223 |
| BseGI | GGATG | 9 cut(s) | 244, 274, 664, 1266, 1695, 2003, 3310, 3795, 4450 |
| BseJI | GATNNNNATC | 2 cut(s) | 1694, 3370 |
| BseMI | GCAATG | 2 cut(s) | 1854, 4467 |
| BseMII | CTCAG | 7 cut(s) | 762, 945, 999, 1270, 2142, 2319, 3568 |
| BseNI | ACTGG | 7 cut(s) | 1205, 2024, 2403, 2754, 3144, 3492, 3699 |
| BseRI | GAGGAG | 5 cut(s) | 260, 653, 3818, 3821, 4351 |
| BseSI | GKGCMC | 3 cut(s) | 147, 209, 4222 |
| BseXI | GCAGC | 7 cut(s) | 172, 821, 1012, 1660, 1751, 4060, 4219 |
| BseYI | CCCAGC | 3 cut(s) | 164, 1658, 2994 |
| BshNI | GGYRCC | 3 cut(s) | 2931, 4152, 4217 |
| BsiHKAI | GWGCWC | 3 cut(s) | 20, 616, 1119 |
| BsiHKCI | CYCGRG | 1 cut(s) | 4481 |
| BsiSI | CCGG | 7 cut(s) | 134, 160, 221, 454, 1520, 3817, 4021 |
| BslFI | GGGAC | 5 cut(s) | 952, 1100, 3077, 3961, 4474 |
| BsmAI | GTCTC | 5 cut(s) | 1363, 2686, 3235, 3520, 4347 |
| BsmBI | CGTCTC | 1 cut(s) | 3235 |
| BsmFI | GGGAC | 5 cut(s) | 952, 1100, 3077, 3961, 4474 |
| BsmI | GAATGC | 5 cut(s) | 889, 1786, 1810, 2097, 3760 |
| Bso31I | GGTCTC | 1 cut(s) | 4347 |
| BsoBI | CYCGRG | 1 cut(s) | 4481 |
| Bsp119I | TTCGAA | 2 cut(s) | 1294, 1510 |
| Bsp120I | GGGCCC | 2 cut(s) | 143, 205 |
| Bsp1286I | GDGCHC | 7 cut(s) | 20, 147, 209, 616, 1119, 3520, 4222 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1569, 3288 |
| Bsp19I | CCATGG | 1 cut(s) | 2582 |
| BspCNI | CTCAG | 7 cut(s) | 761, 944, 1000, 1269, 2141, 2318, 3567 |
| BspLI | GGNNCC | 9 cut(s) | 144, 145, 207, 681, 1088, 2345, 2933, 4154, 4219 |
| BspMAI | CTGCAG | 1 cut(s) | 1678 |
| BspMI | ACCTGC | 6 cut(s) | 1008, 1667, 2008, 2648, 3333, 3718 |
| BspPI | GGATC | 7 cut(s) | 526, 1010, 2393, 2530, 3626, 3627, 4252 |
| BspQI | GCTCTTC | 1 cut(s) | 3806 |
| BspT104I | TTCGAA | 2 cut(s) | 1294, 1510 |
| BspT107I | GGYRCC | 3 cut(s) | 2931, 4152, 4217 |
| BspTI | CTTAAG | 2 cut(s) | 2864, 3431 |
| BspTNI | GGTCTC | 1 cut(s) | 4347 |
| BsrBI | CCGCTC | 2 cut(s) | 198, 4537 |
| BsrDI | GCAATG | 2 cut(s) | 1854, 4467 |
| BsrFI | RCCGGY | 2 cut(s) | 133, 4020 |
| BsrI | ACTGG | 7 cut(s) | 1205, 2024, 2403, 2754, 3144, 3492, 3699 |
| BssAI | RCCGGY | 2 cut(s) | 133, 4020 |
| BssNAI | GTATAC | 1 cut(s) | 2861 |
| BssNI | GRCGYC | 1 cut(s) | 3228 |
| BssSI | CACGAG | 1 cut(s) | 4098 |
| BssT1I | CCWWGG | 2 cut(s) | 867, 2582 |
| Bst1107I | GTATAC | 1 cut(s) | 2861 |
| Bst2BI | CACGAG | 1 cut(s) | 4098 |
| Bst2UI | CCWGG | 7 cut(s) | 1020, 2791, 2979, 3044, 3636, 4078, 4223 |
| Bst6I | CTCTTC | 7 cut(s) | 323, 711, 1931, 2832, 3309, 3806, 4469 |
| BstACI | GRCGYC | 1 cut(s) | 3228 |
| BstAFI | CTTAAG | 2 cut(s) | 2864, 3431 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2938, 4463 |
| BstBAI | YACGTR | 2 cut(s) | 3878, 4198 |
| BstBI | TTCGAA | 2 cut(s) | 1294, 1510 |
| BstC8I | GCNNGC | 8 cut(s) | 190, 209, 546, 875, 2797, 3797, 4022, 4412 |
| BstDEI | CTNAG | 9 cut(s) | 748, 931, 1008, 1256, 1569, 2128, 2305, 3288, 3554 |
| BstDSI | CCRYGG | 2 cut(s) | 1287, 2582 |
| BstF5I | GGATG | 9 cut(s) | 244, 274, 664, 1266, 1695, 2003, 3310, 3795, 4450 |
| BstH2I | RGCGCY | 2 cut(s) | 65, 1709 |
| BstHHI | GCGC | 2 cut(s) | 64, 1708 |
| BstMAI | GTCTC | 5 cut(s) | 1363, 2686, 3235, 3520, 4347 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 24, 99, 204, 580, 1214, 2938, 3515, 4463 |
| BstNI | CCWGG | 7 cut(s) | 1020, 2791, 2979, 3044, 3636, 4078, 4223 |
| BstSCI | CCNGG | 9 cut(s) | 158, 1018, 2789, 2977, 3042, 3634, 3816, 4076, 4221 |
| BstSFI | CTRYAG | 3 cut(s) | 1674, 1734, 1776 |
| BstSLI | GKGCMC | 3 cut(s) | 147, 209, 4222 |
| BstV1I | GCAGC | 7 cut(s) | 172, 821, 1012, 1660, 1751, 4060, 4219 |
| BstV2I | GAAGAC | 2 cut(s) | 2266, 4539 |
| BstX2I | RGATCY | 5 cut(s) | 45, 1015, 3619, 3631, 3841 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1399 |
| BstYI | RGATCY | 5 cut(s) | 45, 1015, 3619, 3631, 3841 |
| BstZ17I | GTATAC | 1 cut(s) | 2861 |
| BsuI | GTATCC | 2 cut(s) | 1480, 3728 |
| BtgI | CCRYGG | 2 cut(s) | 1287, 2582 |
| BtrI | CACGTC | 1 cut(s) | 1983 |
| BtsCI | GGATG | 9 cut(s) | 244, 274, 664, 1266, 1695, 2003, 3310, 3795, 4450 |
| BtsI | GCAGTG | 2 cut(s) | 786, 1056 |
| BtsIMutI | CAGTG | 8 cut(s) | 504, 786, 1056, 1845, 2410, 2475, 3063, 3692 |
| BveI | ACCTGC | 6 cut(s) | 1008, 1667, 2008, 2648, 3333, 3718 |
| Cac8I | GCNNGC | 8 cut(s) | 190, 209, 546, 875, 2797, 3797, 4022, 4412 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1238, 4463 |
| CfoI | GCGC | 2 cut(s) | 64, 1708 |
| Cfr10I | RCCGGY | 2 cut(s) | 133, 4020 |
| CseI | GACGC | 2 cut(s) | 92, 437 |
| DdeI | CTNAG | 9 cut(s) | 748, 931, 1008, 1256, 1569, 2128, 2305, 3288, 3554 |
| DraI | TTTAAA | 1 cut(s) | 4524 |
| DraIII | CACNNNGTG | 2 cut(s) | 836, 2938 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1193 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3591 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1193 |
| EaeI | YGGCCR | 1 cut(s) | 4018 |
| Eam1104I | CTCTTC | 7 cut(s) | 323, 711, 1931, 2832, 3309, 3806, 4469 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3591 |
| EarI | CTCTTC | 7 cut(s) | 323, 711, 1931, 2832, 3309, 3806, 4469 |
| EciI | GGCGGA | 1 cut(s) | 144 |
| Eco130I | CCWWGG | 2 cut(s) | 867, 2582 |
| Eco147I | AGGCCT | 1 cut(s) | 2231 |
| Eco24I | GRGCYC | 3 cut(s) | 147, 209, 3520 |
| Eco31I | GGTCTC | 1 cut(s) | 4347 |
| Eco32I | GATATC | 2 cut(s) | 3106, 3253 |
| Eco47I | GGWCC | 6 cut(s) | 679, 760, 1087, 2354, 2969, 3179 |
| Eco47III | AGCGCT | 1 cut(s) | 1707 |
| Eco57I | CTGAAG | 5 cut(s) | 746, 2396, 2769, 2907, 4562 |
| Eco88I | CYCGRG | 1 cut(s) | 4481 |
| EcoO109I | RGGNCCY | 4 cut(s) | 143, 205, 1087, 2969 |
| EcoRII | CCWGG | 7 cut(s) | 1018, 2789, 2977, 3042, 3634, 4076, 4221 |
| EcoRV | GATATC | 2 cut(s) | 3106, 3253 |
| EcoT14I | CCWWGG | 2 cut(s) | 867, 2582 |
| EcoT38I | GRGCYC | 3 cut(s) | 147, 209, 3520 |
| ErhI | CCWWGG | 2 cut(s) | 867, 2582 |
| Esp3I | CGTCTC | 1 cut(s) | 3235 |
| FaqI | GGGAC | 5 cut(s) | 952, 1100, 3077, 3961, 4474 |
| FauI | CCCGC | 2 cut(s) | 216, 979 |
| FauNDI | CATATG | 1 cut(s) | 2508 |
| FblI | GTMKAC | 4 cut(s) | 81, 1197, 2047, 2860 |
| Fnu4HI | GCNGC | 8 cut(s) | 186, 810, 1026, 1674, 1740, 4074, 4233, 4538 |
| FokI | GGATG | 9 cut(s) | 251, 281, 671, 1273, 1702, 1990, 3317, 3802, 4457 |
| FriOI | GRGCYC | 3 cut(s) | 147, 209, 3520 |
| Fsp4HI | GCNGC | 8 cut(s) | 186, 810, 1026, 1674, 1740, 4074, 4233, 4538 |
| FspBI | CTAG | 7 cut(s) | 417, 777, 1062, 1091, 3158, 3657, 3699 |
| GlaI | GCGC | 2 cut(s) | 63, 1707 |
| GluI | GCNGC | 8 cut(s) | 186, 810, 1026, 1674, 1740, 4074, 4233, 4538 |
| GsaI | CCCAGC | 3 cut(s) | 168, 1662, 2998 |
| GsuI | CTGGAG | 1 cut(s) | 727 |
| HaeII | RGCGCY | 2 cut(s) | 65, 1709 |
| HapII | CCGG | 7 cut(s) | 134, 160, 221, 454, 1520, 3817, 4021 |
| HgaI | GACGC | 2 cut(s) | 92, 437 |
| HhaI | GCGC | 2 cut(s) | 64, 1708 |
| Hin1I | GRCGYC | 1 cut(s) | 3228 |
| Hin6I | GCGC | 2 cut(s) | 62, 1706 |
| HinP1I | GCGC | 2 cut(s) | 62, 1706 |
| HincII | GTYRAC | 3 cut(s) | 633, 1186, 1198 |
| HindII | GTYRAC | 3 cut(s) | 633, 1186, 1198 |
| HindIII | AAGCTT | 4 cut(s) | 1442, 3386, 3831, 4497 |
| HpaII | CCGG | 7 cut(s) | 134, 160, 221, 454, 1520, 3817, 4021 |
| Hpy166II | GTNNAC | 9 cut(s) | 82, 633, 1186, 1198, 2048, 2554, 2861, 3740, 4302 |
| Hpy8I | GTNNAC | 9 cut(s) | 82, 633, 1186, 1198, 2048, 2554, 2861, 3740, 4302 |
| Hpy99I | CGWCG | 3 cut(s) | 113, 3230, 3267 |
| HpyCH4IV | ACGT | 6 cut(s) | 1113, 1982, 3080, 3228, 3877, 4197 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 24, 99, 204, 580, 1214, 2938, 3515, 4463 |
| HpyF3I | CTNAG | 9 cut(s) | 748, 931, 1008, 1256, 1569, 2128, 2305, 3288, 3554 |
| HpySE526I | ACGT | 6 cut(s) | 1113, 1982, 3080, 3228, 3877, 4197 |
| Hsp92I | GRCGYC | 1 cut(s) | 3228 |
| HspAI | GCGC | 2 cut(s) | 62, 1706 |
| KpnI | GGTACC | 1 cut(s) | 4156 |
| KroI | GCCGGC | 1 cut(s) | 4020 |
| KroNI | GCCGGC | 1 cut(s) | 4022 |
| LguI | GCTCTTC | 1 cut(s) | 3806 |
| LmnI | GCTCC | 9 cut(s) | 157, 203, 1965, 2343, 2669, 2980, 3284, 3979, 4063 |
| Lsp1109I | GCAGC | 7 cut(s) | 172, 821, 1012, 1660, 1751, 4060, 4219 |
| LweI | GCATC | 9 cut(s) | 589, 957, 1162, 2012, 2296, 2314, 3040, 4132, 4430 |
| MaeI | CTAG | 7 cut(s) | 417, 777, 1062, 1091, 3158, 3657, 3699 |
| MaeII | ACGT | 6 cut(s) | 1113, 1982, 3080, 3228, 3877, 4197 |
| MbiI | CCGCTC | 2 cut(s) | 198, 4537 |
| MfeI | CAATTG | 1 cut(s) | 3298 |
| MflI | RGATCY | 5 cut(s) | 45, 1015, 3619, 3631, 3841 |
| MhlI | GDGCHC | 7 cut(s) | 20, 147, 209, 616, 1119, 3520, 4222 |
| MlyI | GAGTC | 5 cut(s) | 226, 909, 1733, 3171, 4304 |
| MmeI | TCCRAC | 4 cut(s) | 483, 928, 2620, 3206 |
| MroNI | GCCGGC | 1 cut(s) | 4020 |
| MroXI | GAANNNNTTC | 8 cut(s) | 47, 769, 1349, 1755, 1827, 2136, 2647, 4513 |
| MslI | CAYNNNNRTG | 3 cut(s) | 791, 2559, 4047 |
| MspA1I | CMGCKG | 2 cut(s) | 2498, 3590 |
| MspCI | CTTAAG | 2 cut(s) | 2864, 3431 |
| MspI | CCGG | 7 cut(s) | 134, 160, 221, 454, 1520, 3817, 4021 |
| MspR9I | CCNGG | 9 cut(s) | 160, 1020, 2791, 2979, 3044, 3636, 3818, 4078, 4223 |
| MunI | CAATTG | 1 cut(s) | 3298 |
| Mva1269I | GAATGC | 5 cut(s) | 889, 1786, 1810, 2097, 3760 |
| MvaI | CCWGG | 7 cut(s) | 1020, 2791, 2979, 3044, 3636, 4078, 4223 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 24, 99, 204, 580, 1214, 2938, 3515, 4463 |
| NaeI | GCCGGC | 1 cut(s) | 4022 |
| NciI | CCSGG | 2 cut(s) | 160, 3818 |
| NcoI | CCATGG | 1 cut(s) | 2582 |
| NdeI | CATATG | 1 cut(s) | 2508 |
| NgoMIV | GCCGGC | 1 cut(s) | 4020 |
| NlaIV | GGNNCC | 9 cut(s) | 144, 145, 207, 681, 1088, 2345, 2933, 4154, 4219 |
| NmeAIII | GCCGAG | 1 cut(s) | 1206 |
| NmuCI | GTSAC | 6 cut(s) | 449, 992, 1053, 2470, 3398, 3873 |
| NspV | TTCGAA | 2 cut(s) | 1294, 1510 |
| PaeR7I | CTCGAG | 1 cut(s) | 4481 |
| PceI | AGGCCT | 1 cut(s) | 2231 |
| PciSI | GCTCTTC | 1 cut(s) | 3806 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 105, 3893 |
| PctI | GAATGC | 5 cut(s) | 889, 1786, 1810, 2097, 3760 |
| PdiI | GCCGGC | 1 cut(s) | 4022 |
| PdmI | GAANNNNTTC | 8 cut(s) | 47, 769, 1349, 1755, 1827, 2136, 2647, 4513 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1840, 3188 |
| PkrI | GCNGC | 8 cut(s) | 187, 811, 1027, 1675, 1741, 4075, 4234, 4539 |
| PleI | GAGTC | 5 cut(s) | 225, 908, 1732, 3170, 4303 |
| PpsI | GAGTC | 5 cut(s) | 225, 908, 1732, 3170, 4303 |
| Ppu21I | YACGTR | 2 cut(s) | 3878, 4198 |
| PpuMI | RGGWCCY | 2 cut(s) | 1087, 2969 |
| PshBI | ATTAAT | 1 cut(s) | 4490 |
| PsiI | TTATAA | 1 cut(s) | 1955 |
| Psp1406I | AACGTT | 1 cut(s) | 3080 |
| Psp5II | RGGWCCY | 2 cut(s) | 1087, 2969 |
| Psp6I | CCWGG | 7 cut(s) | 1018, 2789, 2977, 3042, 3634, 4076, 4221 |
| PspFI | CCCAGC | 3 cut(s) | 164, 1658, 2994 |
| PspGI | CCWGG | 7 cut(s) | 1018, 2789, 2977, 3042, 3634, 4076, 4221 |
| PspN4I | GGNNCC | 9 cut(s) | 144, 145, 207, 681, 1088, 2345, 2933, 4154, 4219 |
| PspOMI | GGGCCC | 2 cut(s) | 143, 205 |
| PspPPI | RGGWCCY | 2 cut(s) | 1087, 2969 |
| PspXI | VCTCGAGB | 1 cut(s) | 4481 |
| PstI | CTGCAG | 1 cut(s) | 1678 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1238, 4463 |
| PsuI | RGATCY | 5 cut(s) | 45, 1015, 3619, 3631, 3841 |
| PvuII | CAGCTG | 1 cut(s) | 2498 |
| RseI | CAYNNNNRTG | 3 cut(s) | 791, 2559, 4047 |
| SalI | GTCGAC | 1 cut(s) | 1196 |
| SapI | GCTCTTC | 1 cut(s) | 3806 |
| SatI | GCNGC | 8 cut(s) | 186, 810, 1026, 1674, 1740, 4074, 4233, 4538 |
| ScaI | AGTACT | 1 cut(s) | 699 |
| SchI | GAGTC | 5 cut(s) | 226, 909, 1733, 3171, 4304 |
| ScrFI | CCNGG | 9 cut(s) | 160, 1020, 2791, 2979, 3044, 3636, 3818, 4078, 4223 |
| SduI | GDGCHC | 7 cut(s) | 20, 147, 209, 616, 1119, 3520, 4222 |
| SfaNI | GCATC | 9 cut(s) | 589, 957, 1162, 2012, 2296, 2314, 3040, 4132, 4430 |
| SfcI | CTRYAG | 3 cut(s) | 1674, 1734, 1776 |
| Sfr274I | CTCGAG | 1 cut(s) | 4481 |
| SfuI | TTCGAA | 2 cut(s) | 1294, 1510 |
| SinI | GGWCC | 6 cut(s) | 679, 760, 1087, 2354, 2969, 3179 |
| SlaI | CTCGAG | 1 cut(s) | 4481 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 791, 2559, 4047 |
| SpeI | ACTAGT | 1 cut(s) | 416 |
| SseBI | AGGCCT | 1 cut(s) | 2231 |
| SspI | AATATT | 1 cut(s) | 1138 |
| SspMI | CTAG | 7 cut(s) | 417, 777, 1062, 1091, 3158, 3657, 3699 |
| StuI | AGGCCT | 1 cut(s) | 2231 |
| StyD4I | CCNGG | 9 cut(s) | 158, 1018, 2789, 2977, 3042, 3634, 3816, 4076, 4221 |
| StyI | CCWWGG | 2 cut(s) | 867, 2582 |
| TaiI | ACGT | 6 cut(s) | 1116, 1985, 3083, 3231, 3880, 4200 |
| TaqII | GACCGA | 1 cut(s) | 777 |
| TatI | WGTACW | 4 cut(s) | 392, 697, 1560, 3772 |
| TauI | GCSGC | 1 cut(s) | 4540 |
| TscAI | CASTG | 8 cut(s) | 504, 793, 1056, 1845, 2410, 2475, 3070, 3699 |
| TseFI | GTSAC | 6 cut(s) | 449, 992, 1053, 2470, 3398, 3873 |
| TseI | GCWGC | 7 cut(s) | 185, 809, 1025, 1673, 1739, 4073, 4232 |
| Tsp45I | GTSAC | 6 cut(s) | 449, 992, 1053, 2470, 3398, 3873 |
| TspGWI | ACGGA | 2 cut(s) | 847, 1276 |
| TspRI | CASTG | 8 cut(s) | 504, 793, 1056, 1845, 2410, 2475, 3070, 3699 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1840, 3188 |
| Vha464I | CTTAAG | 2 cut(s) | 2864, 3431 |
| VpaK11BI | GGWCC | 6 cut(s) | 679, 760, 1087, 2354, 2969, 3179 |
| VspI | ATTAAT | 1 cut(s) | 4490 |
| XapI | RAATTY | 7 cut(s) | 952, 1875, 2133, 2269, 2436, 2954, 3918 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3499 |
| XhoI | CTCGAG | 1 cut(s) | 4481 |
| XmiI | GTMKAC | 4 cut(s) | 81, 1197, 2047, 2860 |
| XmnI | GAANNNNTTC | 8 cut(s) | 47, 769, 1349, 1755, 1827, 2136, 2647, 4513 |
| XspI | CTAG | 7 cut(s) | 417, 777, 1062, 1091, 3158, 3657, 3699 |
| ZraI | GACGTC | 1 cut(s) | 3229 |
| ZrmI | AGTACT | 1 cut(s) | 699 |