RPAP1-like, N-terminal
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38440 |
| fragaria_vesca | FvH4_2g15920 FvH4_2g15920 |
| malus_domestica | MD05G1128200.v1.1 MD10G1131500.v1.1 |
| prunus_persica | Prupe.8G172300_v2.0.a1 |
| pyrus_communis | pycom05g12410 pycom10g11260 |
| rosa_chinensis | RchiOBHm_Chr6g0279371 |
| rosa_laevigata | RLG00000013150 |
| rosa_multiflora | Rmu_sc0026652.1_g000002 Rmu_ssc0000349.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00188950 |
| rosa_rugosa | Rorug06G0124200 |
| rosa_samantha | Rh6AG232900 Rh6BG237300 Rh6CG239400 Rh6DG231100 |
| rosa_wichuraiana | Rw6G020340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1835 |
| AarI | CACCTGC | 1 cut(s) | 2666 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1172 |
| Acc36I | ACCTGC | 5 cut(s) | 1547, 2528, 2666, 3461, 3598 |
| Acc65I | GGTACC | 1 cut(s) | 4032 |
| AccB1I | GGYRCC | 5 cut(s) | 838, 2811, 2879, 4032, 4097 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1720, 2289, 3068, 3426 |
| AccBSI | CCGCTC | 1 cut(s) | 201 |
| AccI | GTMKAC | 5 cut(s) | 1176, 1927, 2740, 3598, 4136 |
| AccII | CGCG | 1 cut(s) | 437 |
| AclWI | GGATC | 3 cut(s) | 1001, 2273, 4132 |
| AcoI | YGGCCR | 1 cut(s) | 3898 |
| AcsI | RAATTY | 7 cut(s) | 307, 1126, 1755, 2087, 2149, 3798, 4090 |
| AcuI | CTGAAG | 6 cut(s) | 491, 737, 1521, 2276, 2787, 3753 |
| AcyI | GRCGYC | 1 cut(s) | 89 |
| AdeI | CACNNNGTG | 1 cut(s) | 2818 |
| AfeI | AGCGCT | 1 cut(s) | 1587 |
| AflII | CTTAAG | 1 cut(s) | 2744 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3471 |
| AhlI | ACTAGT | 2 cut(s) | 389, 416 |
| AjnI | CCWGG | 5 cut(s) | 1009, 2857, 2922, 3956, 4101 |
| AleI | CACNNNNGTG | 1 cut(s) | 3927 |
| Alw21I | GWGCWC | 1 cut(s) | 1110 |
| AlwI | GGATC | 3 cut(s) | 1001, 2273, 4132 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1217, 3776, 4343 |
| Ama87I | CYCGRG | 2 cut(s) | 2670, 4119 |
| Aor51HI | AGCGCT | 1 cut(s) | 1587 |
| ApaI | GGGCCC | 2 cut(s) | 149, 212 |
| ApoI | RAATTY | 7 cut(s) | 307, 1126, 1755, 2087, 2149, 3798, 4090 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 405, 437, 817, 849, 1852, 1884 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 122, 308, 1707, 2016, 2527, 4393 |
| Asp718I | GGTACC | 1 cut(s) | 4032 |
| AspLEI | GCGC | 4 cut(s) | 67, 437, 453, 1588 |
| AsuC2I | CCSGG | 6 cut(s) | 163, 527, 2671, 2672, 3516, 3698 |
| AsuII | TTCGAA | 1 cut(s) | 1100 |
| AvaI | CYCGRG | 2 cut(s) | 2670, 4119 |
| AvaII | GGWCC | 5 cut(s) | 670, 751, 2234, 2849, 3511 |
| BaeGI | GKGCMC | 4 cut(s) | 149, 212, 3400, 4102 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3063, 3096 |
| BanI | GGYRCC | 5 cut(s) | 838, 2811, 2879, 4032, 4097 |
| BanII | GRGCYC | 2 cut(s) | 149, 212 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1620, 1652, 2709, 2741 |
| BauI | CACGAG | 1 cut(s) | 3978 |
| BbsI | GAAGAC | 2 cut(s) | 2146, 4419 |
| Bbv12I | GWGCWC | 1 cut(s) | 1110 |
| BceAI | ACGGC | 2 cut(s) | 78, 884 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 617, 651 |
| BciT130I | CCWGG | 5 cut(s) | 1011, 2859, 2924, 3958, 4103 |
| BciVI | GTATCC | 1 cut(s) | 3886 |
| BclI | TGATCA | 1 cut(s) | 1252 |
| BcnI | CCSGG | 6 cut(s) | 163, 527, 2671, 2672, 3516, 3698 |
| BcuI | ACTAGT | 2 cut(s) | 389, 416 |
| BfaI | CTAG | 8 cut(s) | 390, 417, 606, 768, 1053, 2136, 3038, 3537 |
| BfmI | CTRYAG | 7 cut(s) | 24, 1274, 1554, 1614, 1656, 3468, 4335 |
| BfoI | RGCGCY | 3 cut(s) | 68, 454, 1589 |
| BfrI | CTTAAG | 1 cut(s) | 2744 |
| BfuAI | ACCTGC | 5 cut(s) | 1547, 2528, 2666, 3461, 3598 |
| BfuI | GTATCC | 1 cut(s) | 3886 |
| BglII | AGATCT | 4 cut(s) | 48, 1169, 2341, 3499 |
| BlpI | GCTNAGC | 1 cut(s) | 1449 |
| BmcAI | AGTACT | 3 cut(s) | 394, 690, 2403 |
| Bme18I | GGWCC | 5 cut(s) | 670, 751, 2234, 2849, 3511 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3471 |
| BmeT110I | CYCGRG | 2 cut(s) | 2670, 4119 |
| BmrI | ACTGGG | 5 cut(s) | 162, 1189, 1909, 2277, 2639 |
| BmsI | GCATC | 7 cut(s) | 580, 1141, 1357, 2176, 2920, 4012, 4310 |
| BmuI | ACTGGG | 5 cut(s) | 162, 1189, 1909, 2277, 2639 |
| BpiI | GAAGAC | 2 cut(s) | 2146, 4419 |
| BpmI | CTGGAG | 1 cut(s) | 2380 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3168 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1449 |
| Bpu14I | TTCGAA | 1 cut(s) | 1100 |
| BpuEI | CTTGAG | 9 cut(s) | 596, 2714, 3175, 3232, 3332, 3701, 4007, 4201, 4346 |
| BpuMI | CCSGG | 6 cut(s) | 163, 527, 2671, 2672, 3516, 3698 |
| Bsa29I | ATCGAT | 1 cut(s) | 516 |
| BsaAI | YACGTR | 2 cut(s) | 1300, 4078 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1574, 3250 |
| BsaHI | GRCGYC | 1 cut(s) | 89 |
| BsaI | GGTCTC | 2 cut(s) | 1316, 4227 |
| BsaWI | WCCGGW | 2 cut(s) | 223, 1399 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 3156, 3186, 4131, 4161 |
| Bse3DI | GCAATG | 3 cut(s) | 508, 1734, 4347 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1574, 3250 |
| BseBI | CCWGG | 5 cut(s) | 1011, 2859, 2924, 3958, 4103 |
| BseCI | ATCGAT | 1 cut(s) | 516 |
| BseJI | GATNNNNATC | 2 cut(s) | 1574, 3250 |
| BseMI | GCAATG | 3 cut(s) | 508, 1734, 4347 |
| BseMII | CTCAG | 6 cut(s) | 753, 936, 990, 1353, 2022, 3448 |
| BseRI | GAGGAG | 6 cut(s) | 263, 644, 722, 3698, 3701, 4231 |
| BseSI | GKGCMC | 4 cut(s) | 149, 212, 3400, 4102 |
| BseYI | CCCAGC | 2 cut(s) | 1582, 2874 |
| Bsh1236I | CGCG | 1 cut(s) | 437 |
| BshNI | GGYRCC | 5 cut(s) | 838, 2811, 2879, 4032, 4097 |
| BshVI | ATCGAT | 1 cut(s) | 516 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1110 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2670, 4119 |
| BsiSI | CCGG | 8 cut(s) | 163, 224, 526, 735, 1400, 2671, 3516, 3697 |
| BslFI | GGGAC | 5 cut(s) | 943, 1091, 2957, 3841, 4354 |
| BsmFI | GGGAC | 5 cut(s) | 943, 1091, 2957, 3841, 4354 |
| BsmI | GAATGC | 5 cut(s) | 880, 1666, 1690, 1977, 3640 |
| Bso31I | GGTCTC | 2 cut(s) | 1316, 4227 |
| BsoBI | CYCGRG | 2 cut(s) | 2670, 4119 |
| Bsp119I | TTCGAA | 1 cut(s) | 1100 |
| Bsp120I | GGGCCC | 2 cut(s) | 145, 208 |
| Bsp1286I | GDGCHC | 5 cut(s) | 149, 212, 1110, 3400, 4102 |
| Bsp1407I | TGTACA | 1 cut(s) | 3188 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1449 |
| Bsp19I | CCATGG | 1 cut(s) | 2462 |
| BspCNI | CTCAG | 6 cut(s) | 752, 935, 991, 1352, 2021, 3447 |
| BspDI | ATCGAT | 1 cut(s) | 516 |
| BspFNI | CGCG | 1 cut(s) | 437 |
| BspMAI | CTGCAG | 3 cut(s) | 1558, 3472, 4339 |
| BspMI | ACCTGC | 5 cut(s) | 1547, 2528, 2666, 3461, 3598 |
| BspPI | GGATC | 3 cut(s) | 1001, 2273, 4132 |
| BspQI | GCTCTTC | 2 cut(s) | 549, 3686 |
| BspT104I | TTCGAA | 1 cut(s) | 1100 |
| BspT107I | GGYRCC | 5 cut(s) | 838, 2811, 2879, 4032, 4097 |
| BspTI | CTTAAG | 1 cut(s) | 2744 |
| BspTNI | GGTCTC | 2 cut(s) | 1316, 4227 |
| BsrBI | CCGCTC | 1 cut(s) | 201 |
| BsrDI | GCAATG | 3 cut(s) | 508, 1734, 4347 |
| BsrGI | TGTACA | 1 cut(s) | 3188 |
| BssNAI | GTATAC | 3 cut(s) | 2741, 3599, 4137 |
| BssNI | GRCGYC | 1 cut(s) | 89 |
| BssSI | CACGAG | 1 cut(s) | 3978 |
| BssT1I | CCWWGG | 2 cut(s) | 858, 2462 |
| Bst1107I | GTATAC | 3 cut(s) | 2741, 3599, 4137 |
| Bst2BI | CACGAG | 1 cut(s) | 3978 |
| Bst2UI | CCWGG | 5 cut(s) | 1011, 2859, 2924, 3958, 4103 |
| Bst6I | CTCTTC | 6 cut(s) | 549, 1362, 2712, 2991, 3189, 3686 |
| BstACI | GRCGYC | 1 cut(s) | 89 |
| BstAFI | CTTAAG | 1 cut(s) | 2744 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2818, 4343 |
| BstAUI | TGTACA | 1 cut(s) | 3188 |
| BstBAI | YACGTR | 2 cut(s) | 1300, 4078 |
| BstBI | TTCGAA | 1 cut(s) | 1100 |
| BstC8I | GCNNGC | 5 cut(s) | 193, 212, 1065, 3058, 3677 |
| BstDSI | CCRYGG | 2 cut(s) | 1266, 2462 |
| BstFNI | CGCG | 1 cut(s) | 437 |
| BstH2I | RGCGCY | 3 cut(s) | 68, 454, 1589 |
| BstHHI | GCGC | 4 cut(s) | 67, 437, 453, 1588 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 102, 207, 571, 1193, 1376, 2818, 3395, 3997, 4343 |
| BstNI | CCWGG | 5 cut(s) | 1011, 2859, 2924, 3958, 4103 |
| BstNSI | RCATGY | 2 cut(s) | 3208, 3761 |
| BstSFI | CTRYAG | 7 cut(s) | 24, 1274, 1554, 1614, 1656, 3468, 4335 |
| BstSLI | GKGCMC | 4 cut(s) | 149, 212, 3400, 4102 |
| BstSNI | TACGTA | 1 cut(s) | 1300 |
| BstUI | CGCG | 1 cut(s) | 437 |
| BstV2I | GAAGAC | 2 cut(s) | 2146, 4419 |
| BstX2I | RGATCY | 5 cut(s) | 48, 1006, 1169, 2341, 3499 |
| BstYI | RGATCY | 5 cut(s) | 48, 1006, 1169, 2341, 3499 |
| BstZ17I | GTATAC | 3 cut(s) | 2741, 3599, 4137 |
| Bsu15I | ATCGAT | 1 cut(s) | 516 |
| BsuI | GTATCC | 1 cut(s) | 3886 |
| BsuTUI | ATCGAT | 1 cut(s) | 516 |
| BtgI | CCRYGG | 2 cut(s) | 1266, 2462 |
| BtsI | GCAGTG | 1 cut(s) | 777 |
| BveI | ACCTGC | 5 cut(s) | 1547, 2528, 2666, 3461, 3598 |
| Cac8I | GCNNGC | 5 cut(s) | 193, 212, 1065, 3058, 3677 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1217, 3776, 4343 |
| CfoI | GCGC | 4 cut(s) | 67, 437, 453, 1588 |
| Cfr9I | CCCGGG | 1 cut(s) | 2670 |
| ClaI | ATCGAT | 1 cut(s) | 516 |
| CseI | GACGC | 1 cut(s) | 78 |
| DraI | TTTAAA | 1 cut(s) | 1791 |
| DraIII | CACNNNGTG | 1 cut(s) | 2818 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1172 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3471 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1172 |
| EaeI | YGGCCR | 1 cut(s) | 3898 |
| Eam1104I | CTCTTC | 6 cut(s) | 549, 1362, 2712, 2991, 3189, 3686 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3471 |
| EarI | CTCTTC | 6 cut(s) | 549, 1362, 2712, 2991, 3189, 3686 |
| EciI | GGCGGA | 1 cut(s) | 147 |
| Eco105I | TACGTA | 1 cut(s) | 1300 |
| Eco130I | CCWWGG | 2 cut(s) | 858, 2462 |
| Eco24I | GRGCYC | 2 cut(s) | 149, 212 |
| Eco31I | GGTCTC | 2 cut(s) | 1316, 4227 |
| Eco32I | GATATC | 1 cut(s) | 3133 |
| Eco47I | GGWCC | 5 cut(s) | 670, 751, 2234, 2849, 3511 |
| Eco47III | AGCGCT | 1 cut(s) | 1587 |
| Eco57I | CTGAAG | 6 cut(s) | 491, 737, 1521, 2276, 2787, 3753 |
| Eco88I | CYCGRG | 2 cut(s) | 2670, 4119 |
| EcoO109I | RGGNCCY | 4 cut(s) | 146, 208, 2849, 3511 |
| EcoRI | GAATTC | 1 cut(s) | 4090 |
| EcoRII | CCWGG | 5 cut(s) | 1009, 2857, 2922, 3956, 4101 |
| EcoRV | GATATC | 1 cut(s) | 3133 |
| EcoT14I | CCWWGG | 2 cut(s) | 858, 2462 |
| EcoT22I | ATGCAT | 1 cut(s) | 2388 |
| EcoT38I | GRGCYC | 2 cut(s) | 149, 212 |
| ErhI | CCWWGG | 2 cut(s) | 858, 2462 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 957, 989, 2478, 2510, 4363, 4395, 4415, 4447 |
| FaqI | GGGAC | 5 cut(s) | 943, 1091, 2957, 3841, 4354 |
| FauI | CCCGC | 2 cut(s) | 144, 219 |
| FauNDI | CATATG | 1 cut(s) | 2388 |
| FbaI | TGATCA | 1 cut(s) | 1252 |
| FblI | GTMKAC | 5 cut(s) | 1176, 1927, 2740, 3598, 4136 |
| FriOI | GRGCYC | 2 cut(s) | 149, 212 |
| FspBI | CTAG | 8 cut(s) | 390, 417, 606, 768, 1053, 2136, 3038, 3537 |
| GlaI | GCGC | 4 cut(s) | 66, 436, 452, 1587 |
| GsaI | CCCAGC | 2 cut(s) | 1586, 2878 |
| GsuI | CTGGAG | 1 cut(s) | 2380 |
| HaeII | RGCGCY | 3 cut(s) | 68, 454, 1589 |
| HapII | CCGG | 8 cut(s) | 163, 224, 526, 735, 1400, 2671, 3516, 3697 |
| HgaI | GACGC | 1 cut(s) | 78 |
| HhaI | GCGC | 4 cut(s) | 67, 437, 453, 1588 |
| Hin1I | GRCGYC | 1 cut(s) | 89 |
| Hin6I | GCGC | 4 cut(s) | 65, 435, 451, 1586 |
| HinP1I | GCGC | 4 cut(s) | 65, 435, 451, 1586 |
| HincII | GTYRAC | 3 cut(s) | 624, 1165, 1177 |
| HindII | GTYRAC | 3 cut(s) | 624, 1165, 1177 |
| HindIII | AAGCTT | 3 cut(s) | 759, 3711, 4377 |
| HpaII | CCGG | 8 cut(s) | 163, 224, 526, 735, 1400, 2671, 3516, 3697 |
| Hpy99I | CGWCG | 3 cut(s) | 94, 116, 3147 |
| HpyCH4IV | ACGT | 2 cut(s) | 1299, 4077 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 102, 207, 571, 1193, 1376, 2818, 3395, 3997, 4343 |
| HpySE526I | ACGT | 2 cut(s) | 1299, 4077 |
| Hsp92I | GRCGYC | 1 cut(s) | 89 |
| HspAI | GCGC | 4 cut(s) | 65, 435, 451, 1586 |
| KpnI | GGTACC | 1 cut(s) | 4036 |
| Ksp22I | TGATCA | 1 cut(s) | 1252 |
| LguI | GCTCTTC | 2 cut(s) | 549, 3686 |
| LmnI | GCTCC | 8 cut(s) | 160, 206, 529, 1845, 2223, 2549, 2860, 3164 |
| LweI | GCATC | 7 cut(s) | 580, 1141, 1357, 2176, 2920, 4012, 4310 |
| MaeI | CTAG | 8 cut(s) | 390, 417, 606, 768, 1053, 2136, 3038, 3537 |
| MaeII | ACGT | 2 cut(s) | 1299, 4077 |
| MaeIII | GTNAC | 9 cut(s) | 983, 2350, 2625, 3049, 3215, 3239, 3278, 3492, 3753 |
| MbiI | CCGCTC | 1 cut(s) | 201 |
| MfeI | CAATTG | 1 cut(s) | 3178 |
| MflI | RGATCY | 5 cut(s) | 48, 1006, 1169, 2341, 3499 |
| MhlI | GDGCHC | 5 cut(s) | 149, 212, 1110, 3400, 4102 |
| MlyI | GAGTC | 5 cut(s) | 229, 900, 2421, 3844, 4184 |
| MmeI | TCCRAC | 2 cut(s) | 919, 2500 |
| Mph1103I | ATGCAT | 1 cut(s) | 2388 |
| MroXI | GAANNNNTTC | 6 cut(s) | 122, 308, 1707, 2016, 2527, 4393 |
| MslI | CAYNNNNRTG | 6 cut(s) | 782, 1365, 2387, 2439, 2786, 3927 |
| MspA1I | CMGCKG | 4 cut(s) | 2378, 3927, 4334, 4409 |
| MspCI | CTTAAG | 1 cut(s) | 2744 |
| MspI | CCGG | 8 cut(s) | 163, 224, 526, 735, 1400, 2671, 3516, 3697 |
| MunI | CAATTG | 1 cut(s) | 3178 |
| Mva1269I | GAATGC | 5 cut(s) | 880, 1666, 1690, 1977, 3640 |
| MvaI | CCWGG | 5 cut(s) | 1011, 2859, 2924, 3958, 4103 |
| MvnI | CGCG | 1 cut(s) | 437 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 102, 207, 571, 1193, 1376, 2818, 3395, 3997, 4343 |
| NciI | CCSGG | 6 cut(s) | 163, 527, 2671, 2672, 3516, 3698 |
| NcoI | CCATGG | 1 cut(s) | 2462 |
| NdeI | CATATG | 1 cut(s) | 2388 |
| NmeAIII | GCCGAG | 1 cut(s) | 1185 |
| NmuCI | GTSAC | 3 cut(s) | 983, 2350, 3753 |
| NsiI | ATGCAT | 1 cut(s) | 2388 |
| NspI | RCATGY | 2 cut(s) | 3208, 3761 |
| NspV | TTCGAA | 1 cut(s) | 1100 |
| OliI | CACNNNNGTG | 1 cut(s) | 3927 |
| PaeR7I | CTCGAG | 1 cut(s) | 4119 |
| PaqCI | CACCTGC | 1 cut(s) | 2666 |
| PciSI | GCTCTTC | 2 cut(s) | 549, 3686 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 108 |
| PctI | GAATGC | 5 cut(s) | 880, 1666, 1690, 1977, 3640 |
| PdmI | GAANNNNTTC | 6 cut(s) | 122, 308, 1707, 2016, 2527, 4393 |
| PflFI | GACNNNGTC | 1 cut(s) | 2429 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1720, 2289, 3068, 3426 |
| PfoI | TCCNGGA | 1 cut(s) | 525 |
| PleI | GAGTC | 5 cut(s) | 228, 899, 2420, 3844, 4183 |
| PpsI | GAGTC | 5 cut(s) | 228, 899, 2420, 3844, 4183 |
| Ppu21I | YACGTR | 2 cut(s) | 1300, 4078 |
| PpuMI | RGGWCCY | 2 cut(s) | 2849, 3511 |
| PsiI | TTATAA | 1 cut(s) | 1835 |
| Psp5II | RGGWCCY | 2 cut(s) | 2849, 3511 |
| Psp6I | CCWGG | 5 cut(s) | 1009, 2857, 2922, 3956, 4101 |
| PspFI | CCCAGC | 2 cut(s) | 1582, 2874 |
| PspGI | CCWGG | 5 cut(s) | 1009, 2857, 2922, 3956, 4101 |
| PspOMI | GGGCCC | 2 cut(s) | 145, 208 |
| PspPPI | RGGWCCY | 2 cut(s) | 2849, 3511 |
| PspXI | VCTCGAGB | 1 cut(s) | 4119 |
| PstI | CTGCAG | 3 cut(s) | 1558, 3472, 4339 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1217, 3776, 4343 |
| PsuI | RGATCY | 5 cut(s) | 48, 1006, 1169, 2341, 3499 |
| PsyI | GACNNNGTC | 1 cut(s) | 2429 |
| PvuII | CAGCTG | 2 cut(s) | 2378, 4334 |
| RseI | CAYNNNNRTG | 6 cut(s) | 782, 1365, 2387, 2439, 2786, 3927 |
| SalI | GTCGAC | 1 cut(s) | 1175 |
| SapI | GCTCTTC | 2 cut(s) | 549, 3686 |
| ScaI | AGTACT | 3 cut(s) | 394, 690, 2403 |
| SchI | GAGTC | 5 cut(s) | 229, 900, 2421, 3844, 4184 |
| SduI | GDGCHC | 5 cut(s) | 149, 212, 1110, 3400, 4102 |
| SfaNI | GCATC | 7 cut(s) | 580, 1141, 1357, 2176, 2920, 4012, 4310 |
| SfcI | CTRYAG | 7 cut(s) | 24, 1274, 1554, 1614, 1656, 3468, 4335 |
| Sfr274I | CTCGAG | 1 cut(s) | 4119 |
| SfuI | TTCGAA | 1 cut(s) | 1100 |
| SinI | GGWCC | 5 cut(s) | 670, 751, 2234, 2849, 3511 |
| SlaI | CTCGAG | 1 cut(s) | 4119 |
| SmaI | CCCGGG | 1 cut(s) | 2672 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 782, 1365, 2387, 2439, 2786, 3927 |
| SnaBI | TACGTA | 1 cut(s) | 1300 |
| SpeI | ACTAGT | 2 cut(s) | 389, 416 |
| SrfI | GCCCGGGC | 1 cut(s) | 2672 |
| SspI | AATATT | 2 cut(s) | 2016, 2835 |
| SspMI | CTAG | 8 cut(s) | 390, 417, 606, 768, 1053, 2136, 3038, 3537 |
| StyI | CCWWGG | 2 cut(s) | 858, 2462 |
| TaiI | ACGT | 2 cut(s) | 1302, 4080 |
| TaqI | TCGA | 9 cut(s) | 114, 516, 894, 1100, 1176, 3333, 4038, 4120, 4413 |
| TatI | WGTACW | 6 cut(s) | 392, 688, 1440, 2401, 3188, 3652 |
| TauI | GCSGC | 2 cut(s) | 3903, 4000 |
| TseFI | GTSAC | 3 cut(s) | 983, 2350, 3753 |
| Tsp45I | GTSAC | 3 cut(s) | 983, 2350, 3753 |
| TspGWI | ACGGA | 1 cut(s) | 1255 |
| TspMI | CCCGGG | 1 cut(s) | 2670 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2429 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1720, 2289, 3068, 3426 |
| Vha464I | CTTAAG | 1 cut(s) | 2744 |
| VpaK11BI | GGWCC | 5 cut(s) | 670, 751, 2234, 2849, 3511 |
| XapI | RAATTY | 7 cut(s) | 307, 1126, 1755, 2087, 2149, 3798, 4090 |
| XceI | RCATGY | 2 cut(s) | 3208, 3761 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 790, 3379 |
| XhoI | CTCGAG | 1 cut(s) | 4119 |
| XmaI | CCCGGG | 1 cut(s) | 2670 |
| XmiI | GTMKAC | 5 cut(s) | 1176, 1927, 2740, 3598, 4136 |
| XmnI | GAANNNNTTC | 6 cut(s) | 122, 308, 1707, 2016, 2527, 4393 |
| XspI | CTAG | 8 cut(s) | 390, 417, 606, 768, 1053, 2136, 3038, 3537 |
| ZrmI | AGTACT | 3 cut(s) | 394, 690, 2403 |
| Zsp2I | ATGCAT | 1 cut(s) | 2388 |