Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026652.1

Orthogroup ID

OG0012052

Physical Location & Seq

Genomic Coordinates Reverse (-)

7359 .. 9284

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026652.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ctgttcaattgggatgataaagaagaggattacctgctcttgagtagaacattagcttctcatttcagtaatagatggttatctctaaagaaaaagcttgaagatagtgacagcaagaatatatcatacagtaaatcacttaagaaaggcaagagttccctcaacaccatatatgaggacattgacacatcaggtataaccagtcaagatttggtagcagagtgggctcaccagagactaccgctacctgtttgctggtttctcagtccagtctcaaccctttgtgatggcaagaccgctggtcttaaaaaatcttccaagttacaggatctcatgcaagatccaggtgattttcttgtagttgctagagctggacttttcttccttttgggtattgaagcactggctagtttcctacctgctggcatccactcccccgttaagagtgtaccgttagtttggaaattgcattctctgtctgtactcttacttgttgggatgggcgtgcttgaggaggagaagagccgggttagttatgaagctttgcaagatctctatgggaatcttcttcatcaggcaaggtcacgtaccttatcgtcagaaccgagaaataaaaataacttggaaattctggcatttgaatcagagattcatgggacatactcaacatttattgaaactcttgtggagcagttttctgctgtatcttatggtgatctgatttatggccggcaagttgcagtttatcttcatcgttgtgttgaagctcctgtgcgacttgctgcctggaatacactaactaattctcgtgttcttgaacttctgccacctttagagaattgctttactgatgcagaggggtaccttgaacctgttgaggataattctgataatttgttggcttacgtgaaatcatggacttctggtgccctggacagggcagcaagtcgaggatcacttgcatatacgcttgttctccatcacctttcagctttcatatttgagtcgtacacaggtgataaattattgcttcggaataagctctcaaggtctcttttgcaagatttctcctcaaagcaacaccatgaggctatgatgttgaatcttattcaatatagcaagccatctgcatcacaaacaatcaagcaagaggatggagcaccagcagggactgccattgcgaagaggctcgagttattagttgaagcttgtgaaggaagttcttcacttttaaatgctgtcgagcggctgaagtcttccttaaagatcagtcagttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0030154 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048869 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP1_C RPAP1_N

Protein Analysis

426

Amino Acids

47.43

Weight (kDa)

6.04

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38440
fragaria_vesca	FvH4_2g15920 FvH4_2g15920
malus_domestica	MD05G1128200.v1.1 MD10G1131500.v1.1
prunus_persica	Prupe.8G172300_v2.0.a1
pyrus_communis	pycom05g12410 pycom10g11260
rosa_chinensis	RchiOBHm_Chr6g0279371
rosa_laevigata	RLG00000013150
rosa_multiflora	Rmu_sc0026652.1_g000002 Rmu_ssc0000349.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188950
rosa_rugosa	Rorug06G0124200
rosa_samantha	Rh6AG232900 Rh6BG237300 Rh6CG239400 Rh6DG231100
rosa_wichuraiana	Rw6G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	42, 427
Acc65I	GGTACC	1 cut(s)	861
AccB1I	GGYRCC	2 cut(s)	861, 926
AccBSI	CCGCTC	1 cut(s)	1246
AciI	CCGC	3 cut(s)	242, 297, 1246
AclWI	GGATC	3 cut(s)	335, 336, 961
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	1 cut(s)	1271
AfaI	GTAC	5 cut(s)	450, 483, 589, 863, 1010
AfiI	CCNNNNNNNGG	2 cut(s)	936, 937
AflII	CTTAAG	1 cut(s)	140
AhdI	GACNNNNNGTC	1 cut(s)	300
AjnI	CCWGG	3 cut(s)	343, 785, 930
AluBI	AGCT	8 cut(s)	56, 97, 371, 542, 767, 992, 1042, 1208
AluI	AGCT	8 cut(s)	56, 97, 371, 542, 767, 992, 1042, 1208
Alw21I	GWGCWC	1 cut(s)	1162
Alw26I	GTCTC	3 cut(s)	229, 277, 1056
AlwI	GGATC	3 cut(s)	335, 336, 961
AlwNI	CAGNNNCTG	1 cut(s)	1172
Ama87I	CYCGRG	1 cut(s)	1190
AoxI	GGCC	1 cut(s)	727
ApeKI	GCWGC	2 cut(s)	782, 941
ApoI	RAATTY	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	1222
Asp718I	GGTACC	1 cut(s)	861
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	5 cut(s)	221, 359, 725, 974, 1028
AvaI	CYCGRG	1 cut(s)	1190
BaeGI	GKGCMC	1 cut(s)	931
BanI	GGYRCC	2 cut(s)	861, 926
BanII	GRGCYC	1 cut(s)	229
BauI	CACGAG	1 cut(s)	807
BbsI	GAAGAC	1 cut(s)	1248
Bbv12I	GWGCWC	1 cut(s)	1162
BbvI	GCAGC	2 cut(s)	769, 953
BccI	CCATC	6 cut(s)	69, 281, 493, 987, 1132, 1148
BciT130I	CCWGG	3 cut(s)	345, 787, 932
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	3 cut(s)	229, 277, 1056
BfaI	CTAG	2 cut(s)	366, 408
BfrI	CTTAAG	1 cut(s)	140
BfuAI	ACCTGC	2 cut(s)	42, 427
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	3 cut(s)	783, 942, 1247
BlsI	GCNGC	3 cut(s)	784, 943, 1248
Bme1390I	CCNGG	4 cut(s)	345, 527, 787, 932
BmeRI	GACNNNNNGTC	1 cut(s)	300
BmeT110I	CYCGRG	1 cut(s)	1190
BmiI	GGNNCC	2 cut(s)	863, 928
BmrFI	CCNGG	4 cut(s)	345, 527, 787, 932
BmsI	GCATC	3 cut(s)	435, 841, 1139
BpiI	GAAGAC	1 cut(s)	1248
BpuEI	CTTGAG	3 cut(s)	61, 530, 1030
BpuMI	CCSGG	1 cut(s)	527
BsaAI	YACGTR	2 cut(s)	587, 907
BsaBI	GATNNNNATC	1 cut(s)	79
BsaI	GGTCTC	1 cut(s)	1056
BsaJI	CCNNGG	1 cut(s)	930
Bsc4I	CCNNNNNNNGG	2 cut(s)	936, 937
Bse118I	RCCGGY	1 cut(s)	729
Bse1I	ACTGG	3 cut(s)	201, 269, 408
Bse3DI	GCAATG	1 cut(s)	1176
Bse8I	GATNNNNATC	1 cut(s)	79
BseBI	CCWGG	3 cut(s)	345, 787, 932
BseDI	CCNNGG	1 cut(s)	930
BseGI	GGATG	4 cut(s)	19, 426, 504, 1159
BseJI	GATNNNNATC	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	936, 937
BseMI	GCAATG	1 cut(s)	1176
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	3 cut(s)	201, 269, 408
BseRI	GAGGAG	3 cut(s)	527, 530, 1060
BseSI	GKGCMC	1 cut(s)	931
BseXI	GCAGC	2 cut(s)	769, 953
BshFI	GGCC	1 cut(s)	729
BshNI	GGYRCC	2 cut(s)	861, 926
BsiHKAI	GWGCWC	1 cut(s)	1162
BsiHKCI	CYCGRG	1 cut(s)	1190
BsiSI	CCGG	2 cut(s)	526, 730
BslFI	GGGAC	2 cut(s)	670, 1183
BslI	CCNNNNNNNGG	2 cut(s)	936, 937
BsmAI	GTCTC	3 cut(s)	229, 277, 1056
BsmFI	GGGAC	2 cut(s)	670, 1183
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	729
Bso31I	GGTCTC	1 cut(s)	1056
BsoBI	CYCGRG	1 cut(s)	1190
Bsp1286I	GDGCHC	3 cut(s)	229, 931, 1162
Bsp143I	GATC	6 cut(s)	328, 340, 550, 715, 953, 1266
BspACI	CCGC	3 cut(s)	242, 297, 1246
BspANI	GGCC	1 cut(s)	729
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	863, 928
BspMI	ACCTGC	2 cut(s)	42, 427
BspPI	GGATC	3 cut(s)	335, 336, 961
BspQI	GCTCTTC	1 cut(s)	515
BspT107I	GGYRCC	2 cut(s)	861, 926
BspTI	CTTAAG	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	1056
BsrBI	CCGCTC	1 cut(s)	1246
BsrDI	GCAATG	1 cut(s)	1176
BsrFI	RCCGGY	1 cut(s)	729
BsrI	ACTGG	3 cut(s)	201, 269, 408
BssAI	RCCGGY	1 cut(s)	729
BssECI	CCNNGG	1 cut(s)	930
BssMI	GATC	6 cut(s)	328, 340, 550, 715, 953, 1266
BssSI	CACGAG	1 cut(s)	807
Bst2BI	CACGAG	1 cut(s)	807
Bst2UI	CCWGG	3 cut(s)	345, 787, 932
Bst4CI	ACNGT	2 cut(s)	131, 453
Bst6I	CTCTTC	3 cut(s)	18, 515, 1178
BstAFI	CTTAAG	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	1172
BstBAI	YACGTR	2 cut(s)	587, 907
BstC8I	GCNNGC	4 cut(s)	424, 506, 731, 1121
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	4 cut(s)	19, 426, 504, 1159
BstKTI	GATC	6 cut(s)	331, 343, 553, 718, 956, 1269
BstMAI	GTCTC	3 cut(s)	229, 277, 1056
BstMBI	GATC	6 cut(s)	328, 340, 550, 715, 953, 1266
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 1172
BstNI	CCWGG	3 cut(s)	345, 787, 932
BstSCI	CCNGG	4 cut(s)	343, 525, 785, 930
BstSLI	GKGCMC	1 cut(s)	931
BstV1I	GCAGC	2 cut(s)	769, 953
BstV2I	GAAGAC	1 cut(s)	1248
BstX2I	RGATCY	3 cut(s)	328, 340, 550
BstYI	RGATCY	3 cut(s)	328, 340, 550
BsuRI	GGCC	1 cut(s)	729
BtsCI	GGATG	4 cut(s)	19, 426, 504, 1159
BtsIMutI	CAGTG	1 cut(s)	401
BveI	ACCTGC	2 cut(s)	42, 427
Cac8I	GCNNGC	4 cut(s)	424, 506, 731, 1121
CaiI	CAGNNNCTG	1 cut(s)	1172
Cfr10I	RCCGGY	1 cut(s)	729
Csp6I	GTAC	5 cut(s)	449, 482, 588, 862, 1009
CviAII	CATG	4 cut(s)	334, 653, 915, 1085
CviQI	GTAC	5 cut(s)	449, 482, 588, 862, 1009
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	6 cut(s)	330, 342, 552, 717, 955, 1268
DpnII	GATC	6 cut(s)	328, 340, 550, 715, 953, 1266
DraI	TTTAAA	1 cut(s)	1233
DriI	GACNNNNNGTC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	727
Eam1104I	CTCTTC	3 cut(s)	18, 515, 1178
Eam1105I	GACNNNNNGTC	1 cut(s)	300
EarI	CTCTTC	3 cut(s)	18, 515, 1178
Eco24I	GRGCYC	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	1056
Eco57I	CTGAAG	1 cut(s)	1271
Eco88I	CYCGRG	1 cut(s)	1190
EcoRII	CCWGG	3 cut(s)	343, 785, 930
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	4 cut(s)	337, 656, 918, 1088
FalI	AAGNNNNNCTT	2 cut(s)	1244, 1276
FaqI	GGGAC	2 cut(s)	670, 1183
FatI	CATG	4 cut(s)	333, 652, 914, 1084
Fnu4HI	GCNGC	3 cut(s)	783, 942, 1247
FokI	GGATG	4 cut(s)	26, 413, 511, 1166
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	3 cut(s)	783, 942, 1247
FspBI	CTAG	2 cut(s)	366, 408
GluI	GCNGC	3 cut(s)	783, 942, 1247
HaeIII	GGCC	1 cut(s)	729
HapII	CCGG	2 cut(s)	526, 730
Hin1II	CATG	4 cut(s)	337, 656, 918, 1088
HindIII	AAGCTT	3 cut(s)	95, 540, 1206
HinfI	GANTC	5 cut(s)	562, 641, 649, 1004, 1102
HpaII	CCGG	2 cut(s)	526, 730
HphI	GGTGA	5 cut(s)	221, 359, 725, 974, 1028
Hpy166II	GTNNAC	2 cut(s)	449, 1011
Hpy188I	TCNGA	5 cut(s)	601, 646, 720, 889, 1035
Hpy188III	TCNNGA	3 cut(s)	40, 206, 815
Hpy8I	GTNNAC	2 cut(s)	449, 1011
HpyAV	CCTTC	1 cut(s)	1208
HpyCH4III	ACNGT	2 cut(s)	131, 453
HpyCH4IV	ACGT	2 cut(s)	586, 906
HpyCH4V	TGCA	8 cut(s)	337, 469, 547, 740, 854, 962, 1060, 1130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 1172
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	2 cut(s)	586, 906
Hsp92II	CATG	4 cut(s)	337, 656, 918, 1088
KpnI	GGTACC	1 cut(s)	865
KroI	GCCGGC	1 cut(s)	729
KroNI	GCCGGC	1 cut(s)	731
Kzo9I	GATC	6 cut(s)	328, 340, 550, 715, 953, 1266
LguI	GCTCTTC	1 cut(s)	515
LmnI	GCTCC	3 cut(s)	688, 772, 1157
Lsp1109I	GCAGC	2 cut(s)	769, 953
LweI	GCATC	3 cut(s)	435, 841, 1139
MaeI	CTAG	2 cut(s)	366, 408
MaeII	ACGT	2 cut(s)	586, 906
MaeIII	GTNAC	3 cut(s)	107, 321, 582
MalI	GATC	6 cut(s)	330, 342, 552, 717, 955, 1268
MbiI	CCGCTC	1 cut(s)	1246
MboI	GATC	6 cut(s)	328, 340, 550, 715, 953, 1266
MfeI	CAATTG	1 cut(s)	7
MflI	RGATCY	3 cut(s)	328, 340, 550
MhlI	GDGCHC	3 cut(s)	229, 931, 1162
MluCI	AATT	8 cut(s)	7, 464, 627, 802, 838, 883, 892, 1022
MlyI	GAGTC	1 cut(s)	1013
MroNI	GCCGGC	1 cut(s)	729
MroXI	GAANNNNTTC	1 cut(s)	1222
MseI	TTAA	5 cut(s)	141, 306, 441, 1232, 1262
MslI	CAYNNNNRTG	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	299
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	2 cut(s)	526, 730
MspR9I	CCNGG	4 cut(s)	345, 527, 787, 932
MunI	CAATTG	1 cut(s)	7
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	3 cut(s)	345, 787, 932
MwoI	GCNNNNNNNGC	2 cut(s)	224, 1172
NaeI	GCCGGC	1 cut(s)	731
NciI	CCSGG	1 cut(s)	527
NdeII	GATC	6 cut(s)	328, 340, 550, 715, 953, 1266
NgoMIV	GCCGGC	1 cut(s)	729
NlaIII	CATG	4 cut(s)	337, 656, 918, 1088
NlaIV	GGNNCC	2 cut(s)	863, 928
NmuCI	GTSAC	2 cut(s)	107, 582
PaeR7I	CTCGAG	1 cut(s)	1190
PciSI	GCTCTTC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	602
PctI	GAATGC	1 cut(s)	469
PdiI	GCCGGC	1 cut(s)	731
PdmI	GAANNNNTTC	1 cut(s)	1222
PfeI	GAWTC	4 cut(s)	562, 641, 649, 1102
PkrI	GCNGC	3 cut(s)	784, 943, 1248
PleI	GAGTC	1 cut(s)	1012
PpsI	GAGTC	1 cut(s)	1012
Ppu21I	YACGTR	2 cut(s)	587, 907
Psp6I	CCWGG	3 cut(s)	343, 785, 930
PspGI	CCWGG	3 cut(s)	343, 785, 930
PspN4I	GGNNCC	2 cut(s)	863, 928
PspXI	VCTCGAGB	1 cut(s)	1190
PstNI	CAGNNNCTG	1 cut(s)	1172
PsuI	RGATCY	3 cut(s)	328, 340, 550
RsaI	GTAC	5 cut(s)	450, 483, 589, 863, 1010
RsaNI	GTAC	5 cut(s)	449, 482, 588, 862, 1009
RseI	CAYNNNNRTG	1 cut(s)	756
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	5 cut(s)	141, 306, 441, 1232, 1262
SatI	GCNGC	3 cut(s)	783, 942, 1247
Sau3AI	GATC	6 cut(s)	328, 340, 550, 715, 953, 1266
SchI	GAGTC	1 cut(s)	1013
ScrFI	CCNGG	4 cut(s)	345, 527, 787, 932
SduI	GDGCHC	3 cut(s)	229, 931, 1162
SfaNI	GCATC	3 cut(s)	435, 841, 1139
Sfr274I	CTCGAG	1 cut(s)	1190
SlaI	CTCGAG	1 cut(s)	1190
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	5 cut(s)	40, 140, 509, 1045, 1190
SmoI	CTYRAG	5 cut(s)	40, 140, 509, 1045, 1190
Sse9I	AATT	8 cut(s)	7, 464, 627, 802, 838, 883, 892, 1022
SsiI	CCGC	3 cut(s)	242, 297, 1246
SspMI	CTAG	2 cut(s)	366, 408
StyD4I	CCNGG	4 cut(s)	343, 525, 785, 930
TaaI	ACNGT	2 cut(s)	131, 453
TaiI	ACGT	2 cut(s)	589, 909
TaqI	TCGA	3 cut(s)	949, 1191, 1242
TasI	AATT	8 cut(s)	7, 464, 627, 802, 838, 883, 892, 1022
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	1 cut(s)	1249
TfiI	GAWTC	4 cut(s)	562, 641, 649, 1102
Tru1I	TTAA	5 cut(s)	141, 306, 441, 1232, 1262
Tru9I	TTAA	5 cut(s)	141, 306, 441, 1232, 1262
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	107, 582
TseI	GCWGC	2 cut(s)	782, 941
Tsp45I	GTSAC	2 cut(s)	107, 582
TspDTI	ATGAA	5 cut(s)	552, 560, 641, 740, 985
TspRI	CASTG	1 cut(s)	408
Vha464I	CTTAAG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	1190
XmnI	GAANNNNTTC	1 cut(s)	1222
XspI	CTAG	2 cut(s)	366, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.