AT4G38670

Thaumatin-like protein 1b

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006096
Physical Location & Seq
Reverse (-)
18069464 .. 18071530
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38670.2

Sequence Viewer

Length: 846 bp
ATGATGAATCGGATCCTCTTGTTTATGATCCTGGCTTTTGTCTCATCTCTTTCAGAAGTTGAGCCAATTTCGTTCAAGATCACGAATCGTTGCCGGAACACGATATGGCCCGGTTTGCTCTCTGGTGCTAACTCAGCGCCGCTCCCCACAACTGGCTTTCGTCTCTCTAGAGGAAAATCTAAAACCGTCGCAATACCAGAGTCGTGGTCCGGTCGTCTCTGGGCACGAACCTTGTGTTCACAAGATCGGAGTTCCGGTTCTTTCGTCTGCTTAACCGGAGATTGCGGCTCGGGAAAAGTCGAATGTTCAGGCTCCGGAGCTAAACCTCCAGCAACTCTCGCCGAGTTTACTCTCAACGGCACAGGAGGACTAGATTTTTACGACGTTAGCCTCGTCGACGGTTACAATCTCCCGATGCTAATCTTGCCCAAGAAAATCGTCATTGGAGGATGCGGAGCCACCGGGTGTCTCGTGGACTTGAACGGCGCGTGTCCCAGAGACCTAAAGCTGGTGACGCGTGGGAATGGGAACGGTGTTGCTTGCCGTAGCGCGTGCGAGGCATTCGGAGACCCAAGGTATTGCTGCAGCGATGCGTACGCCACGCCGGACACGTGTCAGCCTTCGGTTTACTCGCTCTTCTTTAAGCATGCGTGCCCACGAGCATACAGCTACGCCTATGACGATAAGACGAGCACTTACACTTGCGCCACCGGAGCCGATTACTTCATCATCTTCTGTCCGCCACCGTATACAAGCGAGAAGCTTTTAGGATCGAGGAAAGATGGTGCAACACTGCCACTAGTAAACAAGAGCATGATTCATTTGCCGCATCCGCACAGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

281

Amino Acids

30.1

Weight (kDa)

8.55

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 13 - 231 1.1e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 142
AccI GTMKAC 2 cut(s) 396, 749
AccII CGCG 3 cut(s) 488, 517, 551
AccIII TCCGGA 1 cut(s) 314
AciI CCGC 6 cut(s) 140, 285, 453, 740, 827, 833
AclWI GGATC 4 cut(s) 7, 20, 22, 778
AcvI CACGTG 1 cut(s) 612
AdeI CACNNNGTG 1 cut(s) 465
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 2 cut(s) 152, 508
AflIII ACRYGT 3 cut(s) 515, 609, 611
AgsI TTSAA 2 cut(s) 76, 481
AhlI ACTAGT 1 cut(s) 799
AjnI CCWGG 1 cut(s) 30
AloI GAACNNNNNNTCC 2 cut(s) 241, 273
AluBI AGCT 5 cut(s) 320, 508, 669, 763, 843
AluI AGCT 5 cut(s) 320, 508, 669, 763, 843
Alw21I GWGCWC 1 cut(s) 695
Alw26I GTCTC 6 cut(s) 46, 167, 221, 473, 492, 561
AlwI GGATC 4 cut(s) 7, 20, 22, 778
AlwNI CAGNNNCTG 1 cut(s) 843
Ama87I CYCGRG 1 cut(s) 289
Aor13HI TCCGGA 1 cut(s) 314
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 3 cut(s) 582, 585, 840
AspLEI GCGC 4 cut(s) 139, 488, 551, 707
AspS9I GGNCC 2 cut(s) 108, 207
AsuC2I CCSGG 2 cut(s) 111, 463
AsuHPI GGTGA 1 cut(s) 523
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 207
BaeGI GKGCMC 2 cut(s) 226, 656
BamHI GGATCC 1 cut(s) 12
BauI CACGAG 2 cut(s) 470, 657
BbrPI CACGTG 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 695
BbvI GCAGC 2 cut(s) 569, 597
BccI CCATC 1 cut(s) 776
BceAI ACGGC 3 cut(s) 373, 499, 528
BciT130I CCWGG 1 cut(s) 32
BcnI CCSGG 2 cut(s) 111, 463
BcoDI GTCTC 6 cut(s) 46, 167, 221, 473, 492, 561
BcuI ACTAGT 1 cut(s) 799
BfaI CTAG 3 cut(s) 168, 371, 800
BfmI CTRYAG 1 cut(s) 583
BfoI RGCGCY 1 cut(s) 140
BisI GCNGC 6 cut(s) 140, 286, 583, 586, 827, 841
BlsI GCNGC 6 cut(s) 141, 287, 584, 587, 828, 842
Bme1390I CCNGG 3 cut(s) 32, 111, 463
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 108, 207
BmiI GGNNCC 4 cut(s) 14, 313, 457, 715
BmrFI CCNGG 3 cut(s) 32, 111, 463
BmsI GCATC 4 cut(s) 405, 440, 580, 838
BoxI GACNNNNGTC 1 cut(s) 612
BpmI CTGGAG 1 cut(s) 312
BpuMI CCSGG 2 cut(s) 111, 463
BsaAI YACGTR 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 419
BsaI GGTCTC 2 cut(s) 492, 561
BsaJI CCNNGG 1 cut(s) 572
BsaWI WCCGGW 5 cut(s) 209, 254, 275, 314, 710
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 508
Bse1I ACTGG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 419
BseAI TCCGGA 1 cut(s) 314
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 572
BseGI GGATG 2 cut(s) 455, 829
BseJI GATNNNNATC 1 cut(s) 419
BseLI CCNNNNNNNGG 2 cut(s) 152, 508
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 157
BseSI GKGCMC 2 cut(s) 226, 656
BseXI GCAGC 2 cut(s) 569, 597
Bsh1236I CGCG 3 cut(s) 488, 517, 551
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 1 cut(s) 109
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 695
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 9 cut(s) 94, 111, 210, 255, 276, 315, 462, 605, 711
BsiWI CGTACG 1 cut(s) 594
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 2 cut(s) 152, 508
BsmAI GTCTC 6 cut(s) 46, 167, 221, 473, 492, 561
BsmBI CGTCTC 2 cut(s) 167, 221
BsmFI GGGAC 1 cut(s) 477
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 1 cut(s) 109
Bso31I GGTCTC 2 cut(s) 492, 561
BsoBI CYCGRG 1 cut(s) 289
Bsp1286I GDGCHC 3 cut(s) 226, 656, 695
Bsp13I TCCGGA 1 cut(s) 314
Bsp143I GATC 5 cut(s) 12, 27, 78, 244, 770
BspACI CCGC 6 cut(s) 140, 285, 453, 740, 827, 833
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 146
BspEI TCCGGA 1 cut(s) 314
BspFNI CGCG 3 cut(s) 488, 517, 551
BspLI GGNNCC 4 cut(s) 14, 313, 457, 715
BspMAI CTGCAG 1 cut(s) 587
BspPI GGATC 4 cut(s) 7, 20, 22, 778
BspQI GCTCTTC 1 cut(s) 641
BspTNI GGTCTC 2 cut(s) 492, 561
BsrBI CCGCTC 1 cut(s) 142
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 5 cut(s) 12, 27, 78, 244, 770
BssNAI GTATAC 1 cut(s) 750
BssSI CACGAG 2 cut(s) 470, 657
BssT1I CCWWGG 1 cut(s) 572
Bst1107I GTATAC 1 cut(s) 750
Bst2BI CACGAG 2 cut(s) 470, 657
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 4 cut(s) 187, 401, 533, 747
Bst6I CTCTTC 1 cut(s) 641
BstBAI YACGTR 1 cut(s) 612
BstC8I GCNNGC 4 cut(s) 541, 553, 648, 652
BstDEI CTNAG 1 cut(s) 133
BstF5I GGATG 2 cut(s) 455, 829
BstFNI CGCG 3 cut(s) 488, 517, 551
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 4 cut(s) 139, 488, 551, 707
BstKTI GATC 5 cut(s) 15, 30, 81, 247, 773
BstMAI GTCTC 6 cut(s) 46, 167, 221, 473, 492, 561
BstMBI GATC 5 cut(s) 12, 27, 78, 244, 770
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 8 cut(s) 115, 134, 338, 424, 514, 557, 713, 832
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 650
BstPAI GACNNNNGTC 1 cut(s) 612
BstSCI CCNGG 3 cut(s) 30, 109, 461
BstSFI CTRYAG 1 cut(s) 583
BstSLI GKGCMC 2 cut(s) 226, 656
BstUI CGCG 3 cut(s) 488, 517, 551
BstV1I GCAGC 2 cut(s) 569, 597
BstX2I RGATCY 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 1 cut(s) 12
BstZ17I GTATAC 1 cut(s) 750
BsuRI GGCC 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 603
BtsCI GGATG 2 cut(s) 455, 829
BtsI GCAGTG 1 cut(s) 791
BtsIMutI CAGTG 1 cut(s) 791
Cac8I GCNNGC 4 cut(s) 541, 553, 648, 652
CaiI CAGNNNCTG 1 cut(s) 843
CfoI GCGC 4 cut(s) 139, 488, 551, 707
Cfr13I GGNCC 2 cut(s) 108, 207
CseI GACGC 1 cut(s) 523
Csp6I GTAC 1 cut(s) 595
CviAII CATG 2 cut(s) 647, 814
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 1 cut(s) 133
DpnI GATC 5 cut(s) 14, 29, 80, 246, 772
DpnII GATC 5 cut(s) 12, 27, 78, 244, 770
DraIII CACNNNGTG 1 cut(s) 465
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
EciI GGCGGA 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 572
Eco31I GGTCTC 2 cut(s) 492, 561
Eco47I GGWCC 1 cut(s) 207
Eco72I CACGTG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 572
ErhI CCWWGG 1 cut(s) 572
Esp3I CGTCTC 2 cut(s) 167, 221
FaeI CATG 2 cut(s) 650, 817
FaiI YATR 7 cut(s) 26, 106, 648, 664, 678, 750, 815
FaqI GGGAC 1 cut(s) 477
FatI CATG 2 cut(s) 646, 813
FblI GTMKAC 2 cut(s) 396, 749
Fnu4HI GCNGC 6 cut(s) 140, 286, 583, 586, 827, 841
FokI GGATG 2 cut(s) 462, 816
Fsp4HI GCNGC 6 cut(s) 140, 286, 583, 586, 827, 841
FspBI CTAG 3 cut(s) 168, 371, 800
GlaI GCGC 4 cut(s) 138, 487, 550, 706
GluI GCNGC 6 cut(s) 140, 286, 583, 586, 827, 841
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 1 cut(s) 109
HapII CCGG 9 cut(s) 94, 111, 210, 255, 276, 315, 462, 605, 711
HgaI GACGC 1 cut(s) 523
HhaI GCGC 4 cut(s) 139, 488, 551, 707
Hin1II CATG 2 cut(s) 650, 817
Hin6I GCGC 4 cut(s) 137, 486, 549, 705
HinP1I GCGC 4 cut(s) 137, 486, 549, 705
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 4 cut(s) 7, 85, 200, 817
HpaII CCGG 9 cut(s) 94, 111, 210, 255, 276, 315, 462, 605, 711
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 7 cut(s) 239, 348, 397, 475, 628, 750, 805
Hpy188I TCNGA 4 cut(s) 12, 55, 249, 566
Hpy188III TCNNGA 6 cut(s) 76, 82, 168, 291, 315, 412
Hpy8I GTNNAC 7 cut(s) 239, 348, 397, 475, 628, 750, 805
Hpy99I CGWCG 4 cut(s) 191, 386, 398, 401
HpyAV CCTTC 1 cut(s) 630
HpyCH4III ACNGT 4 cut(s) 187, 401, 533, 747
HpyCH4IV ACGT 2 cut(s) 384, 611
HpyCH4V TGCA 2 cut(s) 585, 788
HpyF10VI GCNNNNNNNGC 8 cut(s) 115, 134, 338, 424, 514, 557, 713, 832
HpyF3I CTNAG 1 cut(s) 133
HpySE526I ACGT 2 cut(s) 384, 611
Hsp92II CATG 2 cut(s) 650, 817
HspAI GCGC 4 cut(s) 137, 486, 549, 705
Kpn2I TCCGGA 1 cut(s) 314
Kzo9I GATC 5 cut(s) 12, 27, 78, 244, 770
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 5 cut(s) 147, 317, 317, 455, 713
Lsp1109I GCAGC 2 cut(s) 569, 597
LweI GCATC 4 cut(s) 405, 440, 580, 838
MaeI CTAG 3 cut(s) 168, 371, 800
MaeII ACGT 2 cut(s) 384, 611
MaeIII GTNAC 2 cut(s) 401, 511
MalI GATC 5 cut(s) 14, 29, 80, 246, 772
MbiI CCGCTC 1 cut(s) 142
MboI GATC 5 cut(s) 12, 27, 78, 244, 770
MboII GAAGA 2 cut(s) 628, 724
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 3 cut(s) 226, 656, 695
MluCI AATT 1 cut(s) 66
MluI ACGCGT 1 cut(s) 515
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 8 cut(s) 26, 164, 336, 359, 401, 440, 550, 768
MroI TCCGGA 1 cut(s) 314
MseI TTAA 2 cut(s) 272, 642
MspA1I CMGCKG 1 cut(s) 843
MspI CCGG 9 cut(s) 94, 111, 210, 255, 276, 315, 462, 605, 711
MspR9I CCNGG 3 cut(s) 32, 111, 463
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 3 cut(s) 488, 517, 551
MwoI GCNNNNNNNGC 8 cut(s) 115, 134, 338, 424, 514, 557, 713, 832
NciI CCSGG 2 cut(s) 111, 463
NdeII GATC 5 cut(s) 12, 27, 78, 244, 770
NlaIII CATG 2 cut(s) 650, 817
NlaIV GGNNCC 4 cut(s) 14, 313, 457, 715
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 511
NspI RCATGY 1 cut(s) 650
PaeI GCATGC 1 cut(s) 650
PciSI GCTCTTC 1 cut(s) 641
PcsI WCGNNNNNNNCGW 3 cut(s) 390, 608, 678
PctI GAATGC 1 cut(s) 560
PfeI GAWTC 3 cut(s) 7, 85, 817
Pfl23II CGTACG 1 cut(s) 594
PkrI GCNGC 6 cut(s) 141, 287, 584, 587, 828, 842
PleI GAGTC 1 cut(s) 208
PmaCI CACGTG 1 cut(s) 612
PmlI CACGTG 1 cut(s) 612
PpsI GAGTC 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 612
PshAI GACNNNNGTC 1 cut(s) 612
Psp6I CCWGG 1 cut(s) 30
PspCI CACGTG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 30
PspLI CGTACG 1 cut(s) 594
PspN4I GGNNCC 4 cut(s) 14, 313, 457, 715
PspPI GGNCC 2 cut(s) 108, 207
PstI CTGCAG 1 cut(s) 587
PstNI CAGNNNCTG 1 cut(s) 843
PsuI RGATCY 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 843
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
SalI GTCGAC 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 2 cut(s) 272, 642
SatI GCNGC 6 cut(s) 140, 286, 583, 586, 827, 841
Sau3AI GATC 5 cut(s) 12, 27, 78, 244, 770
Sau96I GGNCC 2 cut(s) 108, 207
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 3 cut(s) 32, 111, 463
SduI GDGCHC 3 cut(s) 226, 656, 695
SfaNI GCATC 4 cut(s) 405, 440, 580, 838
SfcI CTRYAG 1 cut(s) 583
SgrDI CGTCGACG 1 cut(s) 395
SinI GGWCC 1 cut(s) 207
SpeI ACTAGT 1 cut(s) 799
SphI GCATGC 1 cut(s) 650
Sse9I AATT 1 cut(s) 66
SsiI CCGC 6 cut(s) 140, 285, 453, 740, 827, 833
SspMI CTAG 3 cut(s) 168, 371, 800
StyD4I CCNGG 3 cut(s) 30, 109, 461
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 4 cut(s) 187, 401, 533, 747
TaiI ACGT 2 cut(s) 387, 614
TaqI TCGA 3 cut(s) 300, 396, 773
TasI AATT 1 cut(s) 66
TauI GCSGC 3 cut(s) 142, 288, 829
TfiI GAWTC 3 cut(s) 7, 85, 817
Tru1I TTAA 2 cut(s) 272, 642
Tru9I TTAA 2 cut(s) 272, 642
TscAI CASTG 1 cut(s) 798
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 3 cut(s) 582, 585, 840
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 3 cut(s) 20, 715, 809
TspRI CASTG 1 cut(s) 798
VpaK11BI GGWCC 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 167
XceI RCATGY 1 cut(s) 650
XmiI GTMKAC 2 cut(s) 396, 749
XspI CTAG 3 cut(s) 168, 371, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.