FvH4_2g01560

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006096
Physical Location & Seq
Reverse (-)
1412361 .. 1415495
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01560.t1

Sequence Viewer

Length: 831 bp
ATGGGTCGTCGTCTTCTTCTACTCTCTGCCTCCATAGTCACACTCCTCACCTTCTCTTTCTTCTCAGAAATGGAGTCGGCATCGTTCAAGATAGTGAACAAGTGCCGCCACACAATCTGGCCGGGAGTTCTGTCCGGCGCCAACACCGAACCGCTCTCTCCCACCGGCTTCGCGCTCAAGAGCGGCAAGTCCCGGACTTTATCAGTACCCAATTCATGGTCGGGTCGGATGTGGGCCCGGACCCTCTGCTCCGGAACCTCCCCCGGAAACTTCTCCTGCCTCACCGCCGACTGCGGCTCCGGAAAGATCGAGTGCGCGGGAAGCGGCGCCAAGCCGCCGGCTACTCTAGCCGAGTTCACTCTCAACGGCACCGACGGCTTGGACTTCTATGACGTCAGCCTCGTCGATGGGTACAACCTCCCGGTGCTGGTGGTGCCCCGCGGCGGGACGAGAGGCGGGTGCAGCCCCACGGGGTGTTTGGTGGACTTGAACGGCGCGTGTCCCAAGGCGCTGAGGGTGGCGCGTGAGGGCGGGAGCGTCGTGGCGTGTAGGAGCGCGTGTGAGGCGTTTGGGGAACCGCAGTTTTGTTGCAGTGAGGCGTACGCGACGCCTGAAACGTGTGCGCCGTCGGTGTTTTCTCTGTATTTCAAACATATTTGCCCACGCGCGTATAGCTATGCGTATGATGACAAGACGAGTACGTATACGTGTGCCTCGGCTGACTACATTATTATTTTCTGCCCTCTGCCTTATACCAGTCAAAAGGTGTTGGGATTACGCAAAGATGGGGCACCGTTACCACTGGTTAATGAGACAATGATGTACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

277

Amino Acids

29.39

Weight (kDa)

8.11

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 33 - 248 1.4e-81 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
AccB1I GGYRCC 5 cut(s) 137, 326, 368, 433, 790
AccB7I CCANNNNNTGG 1 cut(s) 216
AccBSI CCGCTC 2 cut(s) 154, 183
AccI GTMKAC 1 cut(s) 704
AccII CGCG 9 cut(s) 173, 317, 441, 497, 523, 557, 605, 666, 668
AccIII TCCGGA 2 cut(s) 251, 299
AcoI YGGCCR 1 cut(s) 119
AcyI GRCGYC 4 cut(s) 138, 327, 393, 608
AdeI CACNNNGTG 1 cut(s) 474
AfaI GTAC 5 cut(s) 207, 413, 602, 700, 824
AfiI CCNNNNNNNGG 4 cut(s) 216, 427, 443, 444
AflIII ACRYGT 2 cut(s) 617, 707
AgsI TTSAA 3 cut(s) 88, 490, 649
AluBI AGCT 1 cut(s) 675
AluI AGCT 1 cut(s) 675
Alw26I GTCTC 1 cut(s) 806
Aor13HI TCCGGA 2 cut(s) 251, 299
AoxI GGCC 2 cut(s) 119, 234
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 462
AspS9I GGNCC 3 cut(s) 234, 235, 240
AsuC2I CCSGG 5 cut(s) 123, 193, 238, 264, 422
AsuHPI GGTGA 2 cut(s) 40, 274
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 3 cut(s) 238, 438, 793
BanI GGYRCC 5 cut(s) 137, 326, 368, 433, 790
BanII GRGCYC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 474
BccI CCATC 2 cut(s) 401, 779
BceAI ACGGC 4 cut(s) 382, 391, 508, 610
BcnI CCSGG 5 cut(s) 123, 193, 238, 264, 422
BcoDI GTCTC 1 cut(s) 806
BfaI CTAG 1 cut(s) 347
BfoI RGCGCY 3 cut(s) 141, 330, 512
BisI GCNGC 7 cut(s) 106, 184, 295, 325, 335, 442, 463
BlsI GCNGC 7 cut(s) 107, 185, 296, 326, 336, 443, 464
Bme1390I CCNGG 5 cut(s) 123, 193, 238, 264, 422
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 234, 235, 240
BmrFI CCNGG 5 cut(s) 123, 193, 238, 264, 422
BmsI GCATC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 5
Bpu10I CCTNAGC 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 5 cut(s) 123, 193, 238, 264, 422
BsaAI YACGTR 2 cut(s) 702, 708
BsaHI GRCGYC 4 cut(s) 138, 327, 393, 608
BsaJI CCNNGG 5 cut(s) 262, 439, 468, 504, 714
BsaWI WCCGGW 2 cut(s) 251, 299
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 544, 574
Bsc4I CCNNNNNNNGG 4 cut(s) 216, 427, 443, 444
Bse118I RCCGGY 2 cut(s) 164, 337
Bse1I ACTGG 2 cut(s) 756, 807
BseAI TCCGGA 2 cut(s) 251, 299
BseDI CCNNGG 5 cut(s) 262, 439, 468, 504, 714
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 4 cut(s) 216, 427, 443, 444
BseMII CTCAG 2 cut(s) 78, 503
BseNI ACTGG 2 cut(s) 756, 807
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 3 cut(s) 238, 438, 793
BseXI GCAGC 1 cut(s) 474
BsgI GTGCAG 1 cut(s) 481
Bsh1236I CGCG 9 cut(s) 173, 317, 441, 497, 523, 557, 605, 666, 668
BshFI GGCC 2 cut(s) 121, 236
BshNI GGYRCC 5 cut(s) 137, 326, 368, 433, 790
BsiWI CGTACG 1 cut(s) 600
BslFI GGGAC 3 cut(s) 175, 460, 486
BslI CCNNNNNNNGG 4 cut(s) 216, 427, 443, 444
BsmAI GTCTC 1 cut(s) 806
BsmFI GGGAC 3 cut(s) 175, 460, 486
BsnI GGCC 2 cut(s) 121, 236
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 3 cut(s) 238, 438, 793
Bsp13I TCCGGA 2 cut(s) 251, 299
Bsp143I GATC 1 cut(s) 306
BspANI GGCC 2 cut(s) 121, 236
BspCNI CTCAG 2 cut(s) 77, 504
BspEI TCCGGA 2 cut(s) 251, 299
BspFNI CGCG 9 cut(s) 173, 317, 441, 497, 523, 557, 605, 666, 668
BspT107I GGYRCC 5 cut(s) 137, 326, 368, 433, 790
BsrBI CCGCTC 2 cut(s) 154, 183
BsrFI RCCGGY 2 cut(s) 164, 337
BsrI ACTGG 2 cut(s) 756, 807
BssAI RCCGGY 2 cut(s) 164, 337
BssECI CCNNGG 5 cut(s) 262, 439, 468, 504, 714
BssMI GATC 1 cut(s) 306
BssNAI GTATAC 1 cut(s) 705
BssNI GRCGYC 4 cut(s) 138, 327, 393, 608
BssT1I CCWWGG 1 cut(s) 504
Bst1107I GTATAC 1 cut(s) 705
Bst4CI ACNGT 1 cut(s) 795
BstACI GRCGYC 4 cut(s) 138, 327, 393, 608
BstBAI YACGTR 2 cut(s) 702, 708
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 64, 512
BstDSI CCRYGG 2 cut(s) 439, 468
BstF5I GGATG 1 cut(s) 234
BstFNI CGCG 9 cut(s) 173, 317, 441, 497, 523, 557, 605, 666, 668
BstH2I RGCGCY 3 cut(s) 141, 330, 512
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 1 cut(s) 806
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 7 cut(s) 321, 347, 375, 433, 462, 563, 672
BstSCI CCNGG 5 cut(s) 121, 191, 236, 262, 420
BstSLI GKGCMC 3 cut(s) 238, 438, 793
BstSNI TACGTA 1 cut(s) 702
BstUI CGCG 9 cut(s) 173, 317, 441, 497, 523, 557, 605, 666, 668
BstV1I GCAGC 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 5
BstZ17I GTATAC 1 cut(s) 705
BsuRI GGCC 2 cut(s) 121, 236
BtgI CCRYGG 2 cut(s) 439, 468
BtsCI GGATG 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 2 cut(s) 598, 800
Cac8I GCNNGC 1 cut(s) 339
Cfr10I RCCGGY 2 cut(s) 164, 337
Cfr13I GGNCC 3 cut(s) 234, 235, 240
Cfr42I CCGCGG 1 cut(s) 442
CseI GACGC 2 cut(s) 526, 616
Csp6I GTAC 5 cut(s) 206, 412, 601, 699, 823
CviAII CATG 1 cut(s) 216
CviQI GTAC 5 cut(s) 206, 412, 601, 699, 823
DdeI CTNAG 2 cut(s) 64, 512
DinI GGCGCC 2 cut(s) 139, 328
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
DraIII CACNNNGTG 1 cut(s) 474
EaeI YGGCCR 1 cut(s) 119
Eco105I TACGTA 1 cut(s) 702
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 238
EgeI GGCGCC 2 cut(s) 139, 328
EheI GGCGCC 2 cut(s) 139, 328
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 1 cut(s) 219
FaqI GGGAC 3 cut(s) 175, 460, 486
FatI CATG 1 cut(s) 215
FauI CCCGC 5 cut(s) 310, 437, 446, 449, 524
FblI GTMKAC 1 cut(s) 704
Fnu4HI GCNGC 7 cut(s) 106, 184, 295, 325, 335, 442, 463
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 7 cut(s) 106, 184, 295, 325, 335, 442, 463
FspBI CTAG 1 cut(s) 347
GluI GCNGC 7 cut(s) 106, 184, 295, 325, 335, 442, 463
HaeII RGCGCY 3 cut(s) 141, 330, 512
HaeIII GGCC 2 cut(s) 121, 236
HgaI GACGC 2 cut(s) 526, 616
Hin1I GRCGYC 4 cut(s) 138, 327, 393, 608
Hin1II CATG 1 cut(s) 219
HinfI GANTC 1 cut(s) 74
HphI GGTGA 2 cut(s) 40, 274
Hpy166II GTNNAC 4 cut(s) 97, 357, 484, 705
Hpy188I TCNGA 2 cut(s) 67, 228
Hpy188III TCNNGA 4 cut(s) 88, 178, 252, 300
Hpy8I GTNNAC 4 cut(s) 97, 357, 484, 705
Hpy99I CGWCG 6 cut(s) 12, 377, 407, 542, 610, 631
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 795
HpyCH4IV ACGT 4 cut(s) 393, 617, 701, 707
HpyCH4V TGCA 2 cut(s) 462, 591
HpyF10VI GCNNNNNNNGC 7 cut(s) 321, 347, 375, 433, 462, 563, 672
HpyF3I CTNAG 2 cut(s) 64, 512
HpySE526I ACGT 4 cut(s) 393, 617, 701, 707
Hsp92I GRCGYC 4 cut(s) 138, 327, 393, 608
Hsp92II CATG 1 cut(s) 219
KasI GGCGCC 2 cut(s) 137, 326
Kpn2I TCCGGA 2 cut(s) 251, 299
KroI GCCGGC 1 cut(s) 337
KroNI GCCGGC 1 cut(s) 339
KspI CCGCGG 1 cut(s) 442
Kzo9I GATC 1 cut(s) 306
LmnI GCTCC 4 cut(s) 254, 302, 534, 552
Lsp1109I GCAGC 1 cut(s) 474
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 347
MaeII ACGT 4 cut(s) 393, 617, 701, 707
MaeIII GTNAC 2 cut(s) 37, 795
MalI GATC 1 cut(s) 308
MbiI CCGCTC 2 cut(s) 154, 183
MboI GATC 1 cut(s) 306
MboII GAAGA 3 cut(s) 5, 8, 52
MhlI GDGCHC 3 cut(s) 238, 438, 793
MluCI AATT 1 cut(s) 211
Mly113I GGCGCC 2 cut(s) 138, 327
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 206
MroI TCCGGA 2 cut(s) 251, 299
MroNI GCCGGC 1 cut(s) 337
MseI TTAA 1 cut(s) 807
MspA1I CMGCKG 1 cut(s) 441
MspR9I CCNGG 5 cut(s) 123, 193, 238, 264, 422
MvnI CGCG 9 cut(s) 173, 317, 441, 497, 523, 557, 605, 666, 668
MwoI GCNNNNNNNGC 7 cut(s) 321, 347, 375, 433, 462, 563, 672
NaeI GCCGGC 1 cut(s) 339
NarI GGCGCC 2 cut(s) 138, 327
NciI CCSGG 5 cut(s) 123, 193, 238, 264, 422
NdeII GATC 1 cut(s) 306
NgoMIV GCCGGC 1 cut(s) 337
NlaIII CATG 1 cut(s) 219
NmeAIII GCCGAG 2 cut(s) 376, 695
NmuCI GTSAC 1 cut(s) 37
PcsI WCGNNNNNNNCGW 3 cut(s) 399, 614, 623
PdiI GCCGGC 1 cut(s) 339
Pfl23II CGTACG 1 cut(s) 600
PflMI CCANNNNNTGG 1 cut(s) 216
PfoI TCCNGGA 1 cut(s) 191
PkrI GCNGC 7 cut(s) 107, 185, 296, 326, 336, 443, 464
PleI GAGTC 1 cut(s) 82
PluTI GGCGCC 2 cut(s) 141, 330
PpsI GAGTC 1 cut(s) 82
Ppu21I YACGTR 2 cut(s) 702, 708
PspLI CGTACG 1 cut(s) 600
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 3 cut(s) 234, 235, 240
RsaI GTAC 5 cut(s) 207, 413, 602, 700, 824
RsaNI GTAC 5 cut(s) 206, 412, 601, 699, 823
SacII CCGCGG 1 cut(s) 442
SaqAI TTAA 1 cut(s) 807
SatI GCNGC 7 cut(s) 106, 184, 295, 325, 335, 442, 463
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 3 cut(s) 234, 235, 240
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 5 cut(s) 123, 193, 238, 264, 422
SduI GDGCHC 3 cut(s) 238, 438, 793
SetI ASST 9 cut(s) 53, 260, 396, 420, 620, 677, 704, 710, 768
SfaNI GCATC 1 cut(s) 89
SfoI GGCGCC 2 cut(s) 139, 328
Sfr303I CCGCGG 1 cut(s) 442
SgrBI CCGCGG 1 cut(s) 442
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SnaBI TACGTA 1 cut(s) 702
Sse9I AATT 1 cut(s) 211
SspDI GGCGCC 2 cut(s) 137, 326
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 5 cut(s) 121, 191, 236, 262, 420
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 795
TaiI ACGT 4 cut(s) 396, 620, 704, 710
TaqI TCGA 2 cut(s) 309, 405
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 822
TauI GCSGC 6 cut(s) 108, 186, 297, 327, 337, 444
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TscAI CASTG 2 cut(s) 598, 807
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 1 cut(s) 462
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 2 cut(s) 598, 807
Van91I CCANNNNNTGG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 704
XspI CTAG 1 cut(s) 347
ZraI GACGTC 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.