Rroxscaffold_7G00215930

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006096
Physical Location & Seq
Forward (+)
66574385 .. 66577791
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215930.1

Sequence Viewer

Length: 837 bp
ATGGGTCGTCGTCGTCTTCTACTATCTGCCTCCATATTCACACTCCTCACCCTCTCGTTCTTCTCAGAAATGGAGTCGGCCTCGTTCAAGATAGTGAACAAGTGCCGCCACACAATCTGGCCGGGTTTTCTCTCCGGCGCCAACAGCCAACCTCTCTCGCCCACCGGCTTCGCGCTCAAGAGCGGCAAGTCCCGGACCTTGTCGGTACCCAAATCATGGTCGGGTCGGATGTGGGCCCGGACCCTCTGCTCCGGATCCTCCCCCGGAAACTTCTCCTGCCTCACCGCCGACTGCGGCTCCGGAAAGATCGAGTGCGCGGGAAGCGGCGCTAAGCCGCCGGCTACTCTAGCCGAGTTCACTCTCAACGGCACCGACGGCTTGGACTTCTATGACGTCAGCCTCGTCGACGGGTACAACCTCCCGGTGCTGGTGGTGCCGCGTGGCGGGAGGAGAGGCGGGTGCAGCCCCACGGGGTGCTTGGTGGACTTGAACGGCGCGTGCCCCAAGGCGCTGAGGGTCGCGCGTGAGGGGAAGAGTGGGGGCGTGGTGGCGTGTAGGAGCGCGTGCGAGGCGTTTGGGGAGCCGCAGTTTTGTTGCAGTGAGGCGTACGCGACGCCCGACACGTGTTCGCCCTCGGTGTTTTCGCAGTATTTCAAACATGTTTGCCCACGCGCGTATAGCTATGCGTATGATGACAAGACGAGTACGTACACGTGTGCGTCGGCTGACTACATTATTATTTTCTGCCCTTTGCCCTATACCAGTCAAAAGGTGTTGGGAGCACGAAAAGATGGGGCGCCACTACCACTGGTTAATGAGACAATGATGTACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

278

Amino Acids

29.68

Weight (kDa)

8.75

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 33 - 250 6.3e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 835
AatII GACGTC 1 cut(s) 396
Acc65I GGTACC 1 cut(s) 205
AccB1I GGYRCC 5 cut(s) 137, 205, 368, 433, 796
AccB7I CCANNNNNTGG 1 cut(s) 216
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 405
AccIII TCCGGA 2 cut(s) 251, 299
AclWI GGATC 2 cut(s) 249, 262
AcoI YGGCCR 1 cut(s) 119
AcvI CACGTG 2 cut(s) 624, 714
AcyI GRCGYC 4 cut(s) 138, 393, 614, 797
AdeI CACNNNGTG 1 cut(s) 474
AfaI GTAC 6 cut(s) 207, 413, 608, 706, 710, 830
AfiI CCNNNNNNNGG 3 cut(s) 216, 427, 443
AflIII ACRYGT 5 cut(s) 621, 623, 658, 711, 713
AgsI TTSAA 3 cut(s) 88, 490, 655
AluBI AGCT 1 cut(s) 681
AluI AGCT 1 cut(s) 681
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 1 cut(s) 812
AlwI GGATC 2 cut(s) 249, 262
Aor13HI TCCGGA 2 cut(s) 251, 299
AoxI GGCC 3 cut(s) 78, 119, 234
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 462
Asp718I GGTACC 1 cut(s) 205
AspS9I GGNCC 4 cut(s) 195, 234, 235, 240
AsuC2I CCSGG 5 cut(s) 123, 193, 238, 264, 422
AsuHPI GGTGA 2 cut(s) 40, 274
AvaII GGWCC 2 cut(s) 195, 240
BaeGI GKGCMC 2 cut(s) 238, 503
BamHI GGATCC 1 cut(s) 254
BanI GGYRCC 5 cut(s) 137, 205, 368, 433, 796
BanII GRGCYC 1 cut(s) 238
BbrPI CACGTG 2 cut(s) 624, 714
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 784
BbvCI CCTCAGC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 474
BccI CCATC 1 cut(s) 785
BceAI ACGGC 3 cut(s) 382, 391, 508
BcnI CCSGG 5 cut(s) 123, 193, 238, 264, 422
BcoDI GTCTC 1 cut(s) 812
BfaI CTAG 1 cut(s) 347
BfoI RGCGCY 4 cut(s) 141, 330, 512, 800
BisI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 8 cut(s) 107, 185, 296, 326, 336, 438, 464, 585
Bme1390I CCNGG 5 cut(s) 123, 193, 238, 264, 422
Bme18I GGWCC 2 cut(s) 195, 240
BmgT120I GGNCC 4 cut(s) 195, 234, 235, 240
BmrFI CCNGG 5 cut(s) 123, 193, 238, 264, 422
BpiI GAAGAC 1 cut(s) 8
BplI GAGNNNNNCTC 2 cut(s) 65, 97
Bpu10I CCTNAGC 1 cut(s) 512
Bpu1102I GCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 5 cut(s) 123, 193, 238, 264, 422
BsaAI YACGTR 3 cut(s) 624, 708, 714
BsaHI GRCGYC 4 cut(s) 138, 393, 614, 797
BsaJI CCNNGG 4 cut(s) 262, 468, 504, 633
BsaWI WCCGGW 2 cut(s) 251, 299
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 572, 602
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 427, 443
Bse118I RCCGGY 2 cut(s) 164, 337
Bse1I ACTGG 2 cut(s) 762, 813
BseAI TCCGGA 2 cut(s) 251, 299
BseDI CCNNGG 4 cut(s) 262, 468, 504, 633
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 3 cut(s) 216, 427, 443
BseMII CTCAG 2 cut(s) 78, 503
BseNI ACTGG 2 cut(s) 762, 813
BseRI GAGGAG 2 cut(s) 35, 463
BseSI GKGCMC 2 cut(s) 238, 503
BseXI GCAGC 1 cut(s) 474
BsgI GTGCAG 1 cut(s) 481
BshFI GGCC 3 cut(s) 80, 121, 236
BshNI GGYRCC 5 cut(s) 137, 205, 368, 433, 796
BsiHKAI GWGCWC 1 cut(s) 784
BsiWI CGTACG 1 cut(s) 606
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 3 cut(s) 216, 427, 443
BsmAI GTCTC 1 cut(s) 812
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 3 cut(s) 80, 121, 236
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 3 cut(s) 238, 503, 784
Bsp13I TCCGGA 2 cut(s) 251, 299
Bsp143I GATC 2 cut(s) 254, 306
Bsp1720I GCTNAGC 1 cut(s) 330
BspANI GGCC 3 cut(s) 80, 121, 236
BspCNI CTCAG 2 cut(s) 77, 504
BspEI TCCGGA 2 cut(s) 251, 299
BspPI GGATC 2 cut(s) 249, 262
BspT107I GGYRCC 5 cut(s) 137, 205, 368, 433, 796
BsrBI CCGCTC 1 cut(s) 183
BsrFI RCCGGY 2 cut(s) 164, 337
BsrI ACTGG 2 cut(s) 762, 813
BssAI RCCGGY 2 cut(s) 164, 337
BssECI CCNNGG 4 cut(s) 262, 468, 504, 633
BssMI GATC 2 cut(s) 254, 306
BssNI GRCGYC 4 cut(s) 138, 393, 614, 797
BssT1I CCWWGG 1 cut(s) 504
Bst6I CTCTTC 1 cut(s) 527
BstACI GRCGYC 4 cut(s) 138, 393, 614, 797
BstBAI YACGTR 3 cut(s) 624, 708, 714
BstC8I GCNNGC 3 cut(s) 339, 499, 565
BstDEI CTNAG 3 cut(s) 64, 330, 512
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 234
BstH2I RGCGCY 4 cut(s) 141, 330, 512, 800
BstKTI GATC 2 cut(s) 257, 309
BstMAI GTCTC 1 cut(s) 812
BstMBI GATC 2 cut(s) 254, 306
BstMWI GCNNNNNNNGC 8 cut(s) 144, 321, 347, 375, 433, 462, 569, 678
BstNSI RCATGY 1 cut(s) 662
BstSCI CCNGG 5 cut(s) 121, 191, 236, 262, 420
BstSLI GKGCMC 2 cut(s) 238, 503
BstSNI TACGTA 1 cut(s) 708
BstV1I GCAGC 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 3 cut(s) 80, 121, 236
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 2 cut(s) 604, 806
Cac8I GCNNGC 3 cut(s) 339, 499, 565
Cfr10I RCCGGY 2 cut(s) 164, 337
Cfr13I GGNCC 4 cut(s) 195, 234, 235, 240
CseI GACGC 2 cut(s) 622, 708
Csp6I GTAC 6 cut(s) 206, 412, 607, 705, 709, 829
CviAII CATG 2 cut(s) 216, 659
CviQI GTAC 6 cut(s) 206, 412, 607, 705, 709, 829
DdeI CTNAG 3 cut(s) 64, 330, 512
DinI GGCGCC 2 cut(s) 139, 798
DpnI GATC 2 cut(s) 256, 308
DpnII GATC 2 cut(s) 254, 306
DraIII CACNNNGTG 1 cut(s) 474
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Eco105I TACGTA 1 cut(s) 708
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 195, 240
Eco72I CACGTG 2 cut(s) 624, 714
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 238
EgeI GGCGCC 2 cut(s) 139, 798
EheI GGCGCC 2 cut(s) 139, 798
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 2 cut(s) 219, 662
FaiI YATR 9 cut(s) 35, 217, 390, 660, 678, 684, 690, 759, 835
FaqI GGGAC 1 cut(s) 175
FatI CATG 2 cut(s) 215, 658
FauI CCCGC 3 cut(s) 310, 437, 449
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
FspBI CTAG 1 cut(s) 347
GluI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
HaeII RGCGCY 4 cut(s) 141, 330, 512, 800
HaeIII GGCC 3 cut(s) 80, 121, 236
HgaI GACGC 2 cut(s) 622, 708
Hin1I GRCGYC 4 cut(s) 138, 393, 614, 797
Hin1II CATG 2 cut(s) 219, 662
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 1 cut(s) 74
HphI GGTGA 2 cut(s) 40, 274
Hpy166II GTNNAC 5 cut(s) 97, 357, 406, 484, 711
Hpy188I TCNGA 2 cut(s) 67, 228
Hpy188III TCNNGA 4 cut(s) 88, 178, 252, 300
Hpy8I GTNNAC 5 cut(s) 97, 357, 406, 484, 711
Hpy99I CGWCG 7 cut(s) 12, 15, 377, 407, 410, 616, 724
HpyCH4IV ACGT 4 cut(s) 393, 623, 707, 713
HpyCH4V TGCA 2 cut(s) 462, 597
HpyF10VI GCNNNNNNNGC 8 cut(s) 144, 321, 347, 375, 433, 462, 569, 678
HpyF3I CTNAG 3 cut(s) 64, 330, 512
HpySE526I ACGT 4 cut(s) 393, 623, 707, 713
Hsp92I GRCGYC 4 cut(s) 138, 393, 614, 797
Hsp92II CATG 2 cut(s) 219, 662
KasI GGCGCC 2 cut(s) 137, 796
Kpn2I TCCGGA 2 cut(s) 251, 299
KpnI GGTACC 1 cut(s) 209
KroI GCCGGC 1 cut(s) 337
KroNI GCCGGC 1 cut(s) 339
Kzo9I GATC 2 cut(s) 254, 306
LmnI GCTCC 5 cut(s) 254, 302, 558, 580, 779
Lsp1109I GCAGC 1 cut(s) 474
MaeI CTAG 1 cut(s) 347
MaeII ACGT 4 cut(s) 393, 623, 707, 713
MalI GATC 2 cut(s) 256, 308
MbiI CCGCTC 1 cut(s) 183
MboI GATC 2 cut(s) 254, 306
MboII GAAGA 3 cut(s) 8, 52, 544
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 3 cut(s) 238, 503, 784
Mly113I GGCGCC 2 cut(s) 138, 797
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 206
MroI TCCGGA 2 cut(s) 251, 299
MroNI GCCGGC 1 cut(s) 337
MseI TTAA 1 cut(s) 813
MspR9I CCNGG 5 cut(s) 123, 193, 238, 264, 422
MwoI GCNNNNNNNGC 8 cut(s) 144, 321, 347, 375, 433, 462, 569, 678
NaeI GCCGGC 1 cut(s) 339
NarI GGCGCC 2 cut(s) 138, 797
NciI CCSGG 5 cut(s) 123, 193, 238, 264, 422
NdeII GATC 2 cut(s) 254, 306
NgoMIV GCCGGC 1 cut(s) 337
NlaIII CATG 2 cut(s) 219, 662
NmeAIII GCCGAG 1 cut(s) 376
NspI RCATGY 1 cut(s) 662
PciI ACATGT 1 cut(s) 658
PcsI WCGNNNNNNNCGW 3 cut(s) 399, 615, 620
PdiI GCCGGC 1 cut(s) 339
Pfl23II CGTACG 1 cut(s) 606
PflFI GACNNNGTC 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 216
PfoI TCCNGGA 1 cut(s) 191
PkrI GCNGC 8 cut(s) 107, 185, 296, 326, 336, 438, 464, 585
PleI GAGTC 1 cut(s) 82
PluTI GGCGCC 2 cut(s) 141, 800
PmaCI CACGTG 2 cut(s) 624, 714
PmlI CACGTG 2 cut(s) 624, 714
PpsI GAGTC 1 cut(s) 82
Ppu21I YACGTR 3 cut(s) 624, 708, 714
PscI ACATGT 1 cut(s) 658
PsiI TTATAA 1 cut(s) 835
PspCI CACGTG 2 cut(s) 624, 714
PspLI CGTACG 1 cut(s) 606
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 4 cut(s) 195, 234, 235, 240
PsuI RGATCY 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 199
RsaI GTAC 6 cut(s) 207, 413, 608, 706, 710, 830
RsaNI GTAC 6 cut(s) 206, 412, 607, 705, 709, 829
SalI GTCGAC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 813
SatI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
Sau3AI GATC 2 cut(s) 254, 306
Sau96I GGNCC 4 cut(s) 195, 234, 235, 240
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 5 cut(s) 123, 193, 238, 264, 422
SduI GDGCHC 3 cut(s) 238, 503, 784
SetI ASST 9 cut(s) 154, 200, 396, 420, 626, 683, 710, 716, 774
SfoI GGCGCC 2 cut(s) 139, 798
SgrDI CGTCGACG 1 cut(s) 404
SinI GGWCC 2 cut(s) 195, 240
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SnaBI TACGTA 1 cut(s) 708
SspDI GGCGCC 2 cut(s) 137, 796
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 5 cut(s) 121, 191, 236, 262, 420
StyI CCWWGG 1 cut(s) 504
TaiI ACGT 4 cut(s) 396, 626, 710, 716
TaqI TCGA 2 cut(s) 309, 405
TatI WGTACW 1 cut(s) 828
TauI GCSGC 7 cut(s) 108, 186, 297, 327, 337, 439, 586
Tru1I TTAA 1 cut(s) 813
Tru9I TTAA 1 cut(s) 813
TscAI CASTG 2 cut(s) 604, 813
TseI GCWGC 1 cut(s) 462
TspRI CASTG 2 cut(s) 604, 813
Tth111I GACNNNGTC 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 216
VpaK11BI GGWCC 2 cut(s) 195, 240
XceI RCATGY 1 cut(s) 662
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 1 cut(s) 347
ZraI GACGTC 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.