Rh6BG018200

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006096
Physical Location & Seq
Reverse (-)
2691429 .. 2694931
3503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG018200.1

Sequence Viewer

Length: 822 bp
ATGGGTCGTCGTCGTCTTCTACTATCTGCCTCCATAGTCACACTCCTCACCCTCTCGTTCTTCTCAGAAATGGAGTCGGCCTCGTTCAAGATAGTGAACAAGTGCCGCCACACGATCTGGCCGGGTGTTCTCTCCGGCGCCAACAGCCAACCTCTCTCGCCCACCGGCTTCGCGCTCAAGAGCGGCAAGTCCCGGACCTTGTCGGTACCCAAATCATGGTCGGGTCGGATGTGGGCCCGGACCCTCTGCTCCGGATCCTCCCCCGGAAACTTCTCCTGCCTCACCGCCGACTGCGGCTCCGGGAAGATCGAGTGCGCGGGAAGCGGCGCCAAGCCGCCGGCCACTCTAGCGGAGTTCACTCTCAACGGCGCCGACGGCTTGGACTTCTATGACGTCAGCCTCGTCGACGGGTACAACCTCCCGGTGCTGGTGGTGCCGCGTGGCGGGAGGAGAGGCGGGTGCAGCCCCACGGGGTGCCTGGTGGACTTGAACGGCGCGTGCCCCAAGGCGCTGAGGGTCGCGCGTGAGGGGAAGAGTGGGGGGGTGGTGGCGTGTAGGAGCGCGTGCGAGGCGTTTGGGGAGCCGCAGTTTTGTTGCAGTGAGGCGTACGCGACGCCCGACACGTGTTCGCCCTCGGTGTTTTCGCAGTATTTCAAACATGTTTGCCCACGCGCGTATAGCTATGCGTATGATGACCAGACGAGTACGTACACGTGTGCGTCGGCTGACTACATTATTATTTTCTGCCCTTTGCCCTATACCAGGTACCATTACTGTGTCACACTTTTCTTCGTTAATCTTTCGAGTTCATGTTACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

273

Amino Acids

29.26

Weight (kDa)

8.6

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 33 - 250 3.3e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
Acc65I GGTACC 2 cut(s) 205, 765
AccB1I GGYRCC 7 cut(s) 137, 205, 326, 368, 433, 474, 765
AccB7I CCANNNNNTGG 1 cut(s) 216
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 405
AccIII TCCGGA 1 cut(s) 251
AclWI GGATC 2 cut(s) 249, 262
AcoI YGGCCR 2 cut(s) 119, 339
AcvI CACGTG 2 cut(s) 624, 714
AcyI GRCGYC 5 cut(s) 138, 327, 369, 393, 614
AdeI CACNNNGTG 1 cut(s) 474
AfaI GTAC 6 cut(s) 207, 413, 608, 706, 710, 767
AfiI CCNNNNNNNGG 4 cut(s) 216, 427, 443, 762
AflIII ACRYGT 6 cut(s) 621, 623, 658, 711, 713, 816
AgsI TTSAA 3 cut(s) 88, 490, 655
AjnI CCWGG 2 cut(s) 477, 761
AluBI AGCT 1 cut(s) 681
AluI AGCT 1 cut(s) 681
AlwI GGATC 2 cut(s) 249, 262
Aor13HI TCCGGA 1 cut(s) 251
AoxI GGCC 4 cut(s) 78, 119, 234, 339
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 462
Asp718I GGTACC 2 cut(s) 205, 765
AspS9I GGNCC 4 cut(s) 195, 234, 235, 240
AsuC2I CCSGG 6 cut(s) 123, 193, 238, 264, 301, 422
AsuHPI GGTGA 2 cut(s) 40, 274
AvaII GGWCC 2 cut(s) 195, 240
BaeGI GKGCMC 2 cut(s) 238, 503
BamHI GGATCC 1 cut(s) 254
BanI GGYRCC 7 cut(s) 137, 205, 326, 368, 433, 474, 765
BanII GRGCYC 1 cut(s) 238
BbrPI CACGTG 2 cut(s) 624, 714
BbsI GAAGAC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 474
BceAI ACGGC 3 cut(s) 382, 391, 508
BciT130I CCWGG 2 cut(s) 479, 763
BcnI CCSGG 6 cut(s) 123, 193, 238, 264, 301, 422
BfaI CTAG 1 cut(s) 347
BfoI RGCGCY 4 cut(s) 141, 330, 372, 512
BisI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
BlsI GCNGC 8 cut(s) 107, 185, 296, 326, 336, 438, 464, 585
Bme1390I CCNGG 8 cut(s) 123, 193, 238, 264, 301, 422, 479, 763
Bme18I GGWCC 2 cut(s) 195, 240
BmgT120I GGNCC 4 cut(s) 195, 234, 235, 240
BmrFI CCNGG 8 cut(s) 123, 193, 238, 264, 301, 422, 479, 763
BpiI GAAGAC 1 cut(s) 8
BplI GAGNNNNNCTC 2 cut(s) 65, 97
Bpu10I CCTNAGC 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 6 cut(s) 123, 193, 238, 264, 301, 422
BsaAI YACGTR 3 cut(s) 624, 708, 714
BsaHI GRCGYC 5 cut(s) 138, 327, 369, 393, 614
BsaJI CCNNGG 4 cut(s) 262, 468, 504, 633
BsaWI WCCGGW 1 cut(s) 251
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 572, 602
Bsc4I CCNNNNNNNGG 4 cut(s) 216, 427, 443, 762
Bse118I RCCGGY 2 cut(s) 164, 337
BseAI TCCGGA 1 cut(s) 251
BseBI CCWGG 2 cut(s) 479, 763
BseDI CCNNGG 4 cut(s) 262, 468, 504, 633
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 4 cut(s) 216, 427, 443, 762
BseMII CTCAG 2 cut(s) 78, 503
BseRI GAGGAG 2 cut(s) 35, 463
BseSI GKGCMC 2 cut(s) 238, 503
BseXI GCAGC 1 cut(s) 474
BsgI GTGCAG 1 cut(s) 481
BshFI GGCC 4 cut(s) 80, 121, 236, 341
BshNI GGYRCC 7 cut(s) 137, 205, 326, 368, 433, 474, 765
BsiWI CGTACG 1 cut(s) 606
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 4 cut(s) 216, 427, 443, 762
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 4 cut(s) 80, 121, 236, 341
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 238, 503
Bsp13I TCCGGA 1 cut(s) 251
Bsp143I GATC 3 cut(s) 114, 254, 306
BspANI GGCC 4 cut(s) 80, 121, 236, 341
BspCNI CTCAG 2 cut(s) 77, 504
BspEI TCCGGA 1 cut(s) 251
BspPI GGATC 2 cut(s) 249, 262
BspT107I GGYRCC 7 cut(s) 137, 205, 326, 368, 433, 474, 765
BsrBI CCGCTC 1 cut(s) 183
BsrFI RCCGGY 2 cut(s) 164, 337
BssAI RCCGGY 2 cut(s) 164, 337
BssECI CCNNGG 4 cut(s) 262, 468, 504, 633
BssMI GATC 3 cut(s) 114, 254, 306
BssNI GRCGYC 5 cut(s) 138, 327, 369, 393, 614
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 2 cut(s) 479, 763
Bst4CI ACNGT 1 cut(s) 776
Bst6I CTCTTC 1 cut(s) 527
BstACI GRCGYC 5 cut(s) 138, 327, 369, 393, 614
BstBAI YACGTR 3 cut(s) 624, 708, 714
BstC8I GCNNGC 3 cut(s) 339, 499, 565
BstDEI CTNAG 2 cut(s) 64, 512
BstDSI CCRYGG 1 cut(s) 468
BstENI CCTNNNNNAGG 1 cut(s) 760
BstF5I GGATG 1 cut(s) 234
BstH2I RGCGCY 4 cut(s) 141, 330, 372, 512
BstKTI GATC 3 cut(s) 117, 257, 309
BstMBI GATC 3 cut(s) 114, 254, 306
BstMWI GCNNNNNNNGC 8 cut(s) 144, 321, 347, 375, 433, 462, 569, 678
BstNI CCWGG 2 cut(s) 479, 763
BstNSI RCATGY 2 cut(s) 662, 820
BstSCI CCNGG 8 cut(s) 121, 191, 236, 262, 299, 420, 477, 761
BstSLI GKGCMC 2 cut(s) 238, 503
BstSNI TACGTA 1 cut(s) 708
BstV1I GCAGC 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 4 cut(s) 80, 121, 236, 341
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 604
Cac8I GCNNGC 3 cut(s) 339, 499, 565
Cfr10I RCCGGY 2 cut(s) 164, 337
Cfr13I GGNCC 4 cut(s) 195, 234, 235, 240
CseI GACGC 2 cut(s) 622, 708
CsiI ACCWGGT 1 cut(s) 761
Csp6I GTAC 6 cut(s) 206, 412, 607, 705, 709, 766
CviAII CATG 4 cut(s) 216, 659, 810, 817
CviQI GTAC 6 cut(s) 206, 412, 607, 705, 709, 766
DdeI CTNAG 2 cut(s) 64, 512
DinI GGCGCC 3 cut(s) 139, 328, 370
DpnI GATC 3 cut(s) 116, 256, 308
DpnII GATC 3 cut(s) 114, 254, 306
DraIII CACNNNGTG 1 cut(s) 474
EaeI YGGCCR 2 cut(s) 119, 339
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Eco105I TACGTA 1 cut(s) 708
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 195, 240
Eco72I CACGTG 2 cut(s) 624, 714
EcoNI CCTNNNNNAGG 1 cut(s) 760
EcoRII CCWGG 2 cut(s) 477, 761
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 238
EgeI GGCGCC 3 cut(s) 139, 328, 370
EheI GGCGCC 3 cut(s) 139, 328, 370
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 4 cut(s) 219, 662, 813, 820
FaqI GGGAC 1 cut(s) 175
FatI CATG 4 cut(s) 215, 658, 809, 816
FauI CCCGC 3 cut(s) 310, 437, 449
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
FspBI CTAG 1 cut(s) 347
GluI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
HaeII RGCGCY 4 cut(s) 141, 330, 372, 512
HaeIII GGCC 4 cut(s) 80, 121, 236, 341
HgaI GACGC 2 cut(s) 622, 708
Hin1I GRCGYC 5 cut(s) 138, 327, 369, 393, 614
Hin1II CATG 4 cut(s) 219, 662, 813, 820
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 1 cut(s) 74
HphI GGTGA 2 cut(s) 40, 274
Hpy166II GTNNAC 5 cut(s) 97, 357, 406, 484, 711
Hpy188I TCNGA 2 cut(s) 67, 228
Hpy188III TCNNGA 3 cut(s) 88, 178, 252
Hpy8I GTNNAC 5 cut(s) 97, 357, 406, 484, 711
Hpy99I CGWCG 7 cut(s) 12, 15, 377, 407, 410, 616, 724
HpyCH4III ACNGT 1 cut(s) 776
HpyCH4IV ACGT 4 cut(s) 393, 623, 707, 713
HpyCH4V TGCA 2 cut(s) 462, 597
HpyF10VI GCNNNNNNNGC 8 cut(s) 144, 321, 347, 375, 433, 462, 569, 678
HpyF3I CTNAG 2 cut(s) 64, 512
HpySE526I ACGT 4 cut(s) 393, 623, 707, 713
Hsp92I GRCGYC 5 cut(s) 138, 327, 369, 393, 614
Hsp92II CATG 4 cut(s) 219, 662, 813, 820
KasI GGCGCC 3 cut(s) 137, 326, 368
Kpn2I TCCGGA 1 cut(s) 251
KpnI GGTACC 2 cut(s) 209, 769
KroI GCCGGC 1 cut(s) 337
KroNI GCCGGC 1 cut(s) 339
Kzo9I GATC 3 cut(s) 114, 254, 306
LmnI GCTCC 4 cut(s) 254, 302, 558, 580
Lsp1109I GCAGC 1 cut(s) 474
MabI ACCWGGT 1 cut(s) 761
MaeI CTAG 1 cut(s) 347
MaeII ACGT 4 cut(s) 393, 623, 707, 713
MaeIII GTNAC 3 cut(s) 37, 778, 812
MalI GATC 3 cut(s) 116, 256, 308
MbiI CCGCTC 1 cut(s) 183
MboI GATC 3 cut(s) 114, 254, 306
MboII GAAGA 5 cut(s) 8, 52, 316, 544, 781
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 2 cut(s) 238, 503
Mly113I GGCGCC 3 cut(s) 138, 327, 369
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 206
MroI TCCGGA 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 337
MseI TTAA 1 cut(s) 795
MslI CAYNNNNRTG 1 cut(s) 774
MspR9I CCNGG 8 cut(s) 123, 193, 238, 264, 301, 422, 479, 763
MvaI CCWGG 2 cut(s) 479, 763
MwoI GCNNNNNNNGC 8 cut(s) 144, 321, 347, 375, 433, 462, 569, 678
NaeI GCCGGC 1 cut(s) 339
NarI GGCGCC 3 cut(s) 138, 327, 369
NciI CCSGG 6 cut(s) 123, 193, 238, 264, 301, 422
NdeII GATC 3 cut(s) 114, 254, 306
NgoMIV GCCGGC 1 cut(s) 337
NlaIII CATG 4 cut(s) 219, 662, 813, 820
NmuCI GTSAC 2 cut(s) 37, 778
NspI RCATGY 2 cut(s) 662, 820
PciI ACATGT 2 cut(s) 658, 816
PcsI WCGNNNNNNNCGW 3 cut(s) 399, 615, 620
PdiI GCCGGC 1 cut(s) 339
Pfl23II CGTACG 1 cut(s) 606
PflFI GACNNNGTC 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 216
PfoI TCCNGGA 2 cut(s) 191, 299
PkrI GCNGC 8 cut(s) 107, 185, 296, 326, 336, 438, 464, 585
PleI GAGTC 1 cut(s) 82
PluTI GGCGCC 3 cut(s) 141, 330, 372
PmaCI CACGTG 2 cut(s) 624, 714
PmlI CACGTG 2 cut(s) 624, 714
PpsI GAGTC 1 cut(s) 82
Ppu21I YACGTR 3 cut(s) 624, 708, 714
PscI ACATGT 2 cut(s) 658, 816
Psp6I CCWGG 2 cut(s) 477, 761
PspCI CACGTG 2 cut(s) 624, 714
PspGI CCWGG 2 cut(s) 477, 761
PspLI CGTACG 1 cut(s) 606
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 4 cut(s) 195, 234, 235, 240
PsuI RGATCY 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 199
RsaI GTAC 6 cut(s) 207, 413, 608, 706, 710, 767
RsaNI GTAC 6 cut(s) 206, 412, 607, 705, 709, 766
RseI CAYNNNNRTG 1 cut(s) 774
SalI GTCGAC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 795
SatI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
Sau3AI GATC 3 cut(s) 114, 254, 306
Sau96I GGNCC 4 cut(s) 195, 234, 235, 240
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 8 cut(s) 123, 193, 238, 264, 301, 422, 479, 763
SduI GDGCHC 2 cut(s) 238, 503
SetI ASST 9 cut(s) 154, 200, 396, 420, 626, 683, 710, 716, 767
SexAI ACCWGGT 1 cut(s) 761
SfoI GGCGCC 3 cut(s) 139, 328, 370
SgrDI CGTCGACG 1 cut(s) 404
SinI GGWCC 2 cut(s) 195, 240
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SnaBI TACGTA 1 cut(s) 708
SspDI GGCGCC 3 cut(s) 137, 326, 368
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 8 cut(s) 121, 191, 236, 262, 299, 420, 477, 761
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 776
TaiI ACGT 4 cut(s) 396, 626, 710, 716
TaqI TCGA 3 cut(s) 309, 405, 803
TauI GCSGC 7 cut(s) 108, 186, 297, 327, 337, 439, 586
Tru1I TTAA 1 cut(s) 795
Tru9I TTAA 1 cut(s) 795
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 2 cut(s) 37, 778
TseI GCWGC 1 cut(s) 462
Tsp45I GTSAC 2 cut(s) 37, 778
TspDTI ATGAA 1 cut(s) 798
TspRI CASTG 1 cut(s) 604
Tth111I GACNNNGTC 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 216
VpaK11BI GGWCC 2 cut(s) 195, 240
XagI CCTNNNNNAGG 1 cut(s) 760
XceI RCATGY 2 cut(s) 662, 820
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 1 cut(s) 347
ZraI GACGTC 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.