Rmu_co8293093.1_g000001

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8293093.1
OG0006096
Physical Location & Seq
Forward (+)
1 .. 726
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8293093.1_g000001.1.cds

Sequence Viewer

Length: 726 bp
aagtgccgccacacgatctggccgggtgttctctccggcgccaacacccaacctctctcgcccaccggcttcgcgctcaagagcggcaagtcccggaccttgtcggtacccaaatcatggtcgggtcggatgtgggcccggaccctctgctccggatcctcccccggaaacttctcctgcctcaccgccgactgcggctccgggaagatcgagtgcgcgggaagcggcgccaagccgccggccactctagcggagttcactctcaacggcgccgacggcttggacttctatgacgtcagcctcgtcgacgggtacaacctcccggtgctggtggtgccgcgtggcgggaggagaggcgggtgcagccccacggggtgcctggtggacttgaacggcgcgtgccccaaggcgctgagggtcgcgcgtgaggggaagagtgggggcgtggtggcgtgtaggagcgcgtgcgaggcgtttggggagccgcagttttgctgcagtgaggcttacgcgacgcccgacacgtgttcgccctcggtgttttcgcagtatttcaaacatgtttgcccacgcgcgtatagctatgcgtatgatgacaagacgagtacgtacacgtgtgcgtcggctgactacattattattttctgccctttgccctataccaggtaccattaccatgtcacacttttcttcaagttcatgttacatgtgatgcatatgagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

241

Amino Acids

25.93

Weight (kDa)

8.76

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 297
Acc65I GGTACC 2 cut(s) 106, 666
AccB1I GGYRCC 7 cut(s) 38, 106, 227, 269, 334, 375, 666
AccB7I CCANNNNNTGG 1 cut(s) 117
AccBSI CCGCTC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 306
AccIII TCCGGA 1 cut(s) 152
AclWI GGATC 2 cut(s) 150, 163
AcoI YGGCCR 2 cut(s) 20, 240
AcvI CACGTG 2 cut(s) 525, 615
AcyI GRCGYC 5 cut(s) 39, 228, 270, 294, 515
AdeI CACNNNGTG 1 cut(s) 375
AfaI GTAC 5 cut(s) 108, 314, 607, 611, 668
AfiI CCNNNNNNNGG 4 cut(s) 117, 328, 344, 663
AflIII ACRYGT 6 cut(s) 522, 524, 559, 612, 614, 706
AgsI TTSAA 3 cut(s) 391, 556, 694
AjnI CCWGG 2 cut(s) 378, 662
AluBI AGCT 1 cut(s) 582
AluI AGCT 1 cut(s) 582
AlwI GGATC 2 cut(s) 150, 163
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 3 cut(s) 20, 135, 240
ApaI GGGCCC 1 cut(s) 139
ApeKI GCWGC 2 cut(s) 363, 495
Asp718I GGTACC 2 cut(s) 106, 666
AspS9I GGNCC 4 cut(s) 96, 135, 136, 141
AsuC2I CCSGG 6 cut(s) 24, 94, 139, 165, 202, 323
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 2 cut(s) 96, 141
BaeGI GKGCMC 2 cut(s) 139, 404
BamHI GGATCC 1 cut(s) 155
BanI GGYRCC 7 cut(s) 38, 106, 227, 269, 334, 375, 666
BanII GRGCYC 1 cut(s) 139
BbrPI CACGTG 2 cut(s) 525, 615
BbvCI CCTCAGC 1 cut(s) 413
BbvI GCAGC 2 cut(s) 375, 482
BceAI ACGGC 3 cut(s) 283, 292, 409
BciT130I CCWGG 2 cut(s) 380, 664
BcnI CCSGG 6 cut(s) 24, 94, 139, 165, 202, 323
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 496
BfoI RGCGCY 4 cut(s) 42, 231, 273, 413
BisI GCNGC 9 cut(s) 7, 85, 196, 226, 236, 338, 364, 485, 496
BlsI GCNGC 9 cut(s) 8, 86, 197, 227, 237, 339, 365, 486, 497
Bme1390I CCNGG 8 cut(s) 24, 94, 139, 165, 202, 323, 380, 664
Bme18I GGWCC 2 cut(s) 96, 141
BmgT120I GGNCC 4 cut(s) 96, 135, 136, 141
BmrFI CCNGG 8 cut(s) 24, 94, 139, 165, 202, 323, 380, 664
BmsI GCATC 1 cut(s) 702
Bpu10I CCTNAGC 1 cut(s) 413
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 6 cut(s) 24, 94, 139, 165, 202, 323
BsaAI YACGTR 3 cut(s) 525, 609, 615
BsaHI GRCGYC 5 cut(s) 39, 228, 270, 294, 515
BsaJI CCNNGG 4 cut(s) 163, 369, 405, 534
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 473, 503
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 328, 344, 663
Bse118I RCCGGY 2 cut(s) 65, 238
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 2 cut(s) 380, 664
BseDI CCNNGG 4 cut(s) 163, 369, 405, 534
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 4 cut(s) 117, 328, 344, 663
BseMII CTCAG 1 cut(s) 404
BseRI GAGGAG 1 cut(s) 364
BseSI GKGCMC 2 cut(s) 139, 404
BseXI GCAGC 2 cut(s) 375, 482
BsgI GTGCAG 1 cut(s) 382
BshFI GGCC 3 cut(s) 22, 137, 242
BshNI GGYRCC 7 cut(s) 38, 106, 227, 269, 334, 375, 666
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 4 cut(s) 117, 328, 344, 663
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 3 cut(s) 22, 137, 242
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 2 cut(s) 139, 404
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 3 cut(s) 15, 155, 207
BspANI GGCC 3 cut(s) 22, 137, 242
BspCNI CTCAG 1 cut(s) 405
BspEI TCCGGA 1 cut(s) 152
BspMAI CTGCAG 1 cut(s) 500
BspPI GGATC 2 cut(s) 150, 163
BspT107I GGYRCC 7 cut(s) 38, 106, 227, 269, 334, 375, 666
BsrBI CCGCTC 1 cut(s) 84
BsrFI RCCGGY 2 cut(s) 65, 238
BssAI RCCGGY 2 cut(s) 65, 238
BssECI CCNNGG 4 cut(s) 163, 369, 405, 534
BssMI GATC 3 cut(s) 15, 155, 207
BssNI GRCGYC 5 cut(s) 39, 228, 270, 294, 515
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 2 cut(s) 380, 664
Bst6I CTCTTC 1 cut(s) 428
BstACI GRCGYC 5 cut(s) 39, 228, 270, 294, 515
BstBAI YACGTR 3 cut(s) 525, 609, 615
BstC8I GCNNGC 3 cut(s) 240, 400, 466
BstDEI CTNAG 1 cut(s) 413
BstDSI CCRYGG 1 cut(s) 369
BstENI CCTNNNNNAGG 1 cut(s) 661
BstF5I GGATG 1 cut(s) 135
BstH2I RGCGCY 4 cut(s) 42, 231, 273, 413
BstKTI GATC 3 cut(s) 18, 158, 210
BstMBI GATC 3 cut(s) 15, 155, 207
BstMWI GCNNNNNNNGC 7 cut(s) 222, 248, 276, 334, 363, 470, 579
BstNI CCWGG 2 cut(s) 380, 664
BstNSI RCATGY 2 cut(s) 563, 710
BstSCI CCNGG 8 cut(s) 22, 92, 137, 163, 200, 321, 378, 662
BstSFI CTRYAG 1 cut(s) 496
BstSLI GKGCMC 2 cut(s) 139, 404
BstSNI TACGTA 1 cut(s) 609
BstV1I GCAGC 2 cut(s) 375, 482
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 3 cut(s) 22, 137, 242
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 3 cut(s) 240, 400, 466
Cfr10I RCCGGY 2 cut(s) 65, 238
Cfr13I GGNCC 4 cut(s) 96, 135, 136, 141
CseI GACGC 2 cut(s) 523, 609
CsiI ACCWGGT 1 cut(s) 662
Csp6I GTAC 5 cut(s) 107, 313, 606, 610, 667
CviAII CATG 5 cut(s) 117, 560, 677, 700, 707
CviQI GTAC 5 cut(s) 107, 313, 606, 610, 667
DdeI CTNAG 1 cut(s) 413
DinI GGCGCC 3 cut(s) 40, 229, 271
DpnI GATC 3 cut(s) 17, 157, 209
DpnII GATC 3 cut(s) 15, 155, 207
DraIII CACNNNGTG 1 cut(s) 375
EaeI YGGCCR 2 cut(s) 20, 240
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco105I TACGTA 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 96, 141
Eco72I CACGTG 2 cut(s) 525, 615
EcoNI CCTNNNNNAGG 1 cut(s) 661
EcoRII CCWGG 2 cut(s) 378, 662
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 717
EcoT38I GRGCYC 1 cut(s) 139
EgeI GGCGCC 3 cut(s) 40, 229, 271
EheI GGCGCC 3 cut(s) 40, 229, 271
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 5 cut(s) 120, 563, 680, 703, 710
FaqI GGGAC 1 cut(s) 76
FatI CATG 5 cut(s) 116, 559, 676, 699, 706
FauI CCCGC 3 cut(s) 211, 338, 350
FauNDI CATATG 1 cut(s) 717
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 9 cut(s) 7, 85, 196, 226, 236, 338, 364, 485, 496
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 9 cut(s) 7, 85, 196, 226, 236, 338, 364, 485, 496
FspBI CTAG 1 cut(s) 248
GluI GCNGC 9 cut(s) 7, 85, 196, 226, 236, 338, 364, 485, 496
HaeII RGCGCY 4 cut(s) 42, 231, 273, 413
HaeIII GGCC 3 cut(s) 22, 137, 242
HgaI GACGC 2 cut(s) 523, 609
Hin1I GRCGYC 5 cut(s) 39, 228, 270, 294, 515
Hin1II CATG 5 cut(s) 120, 563, 680, 703, 710
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 4 cut(s) 258, 307, 385, 612
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 2 cut(s) 79, 153
Hpy8I GTNNAC 4 cut(s) 258, 307, 385, 612
Hpy99I CGWCG 5 cut(s) 278, 308, 311, 517, 625
HpyCH4IV ACGT 4 cut(s) 294, 524, 608, 614
HpyCH4V TGCA 3 cut(s) 363, 498, 715
HpyF10VI GCNNNNNNNGC 7 cut(s) 222, 248, 276, 334, 363, 470, 579
HpyF3I CTNAG 1 cut(s) 413
HpySE526I ACGT 4 cut(s) 294, 524, 608, 614
Hsp92I GRCGYC 5 cut(s) 39, 228, 270, 294, 515
Hsp92II CATG 5 cut(s) 120, 563, 680, 703, 710
KasI GGCGCC 3 cut(s) 38, 227, 269
Kpn2I TCCGGA 1 cut(s) 152
KpnI GGTACC 2 cut(s) 110, 670
KroI GCCGGC 1 cut(s) 238
KroNI GCCGGC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 15, 155, 207
LmnI GCTCC 4 cut(s) 155, 203, 459, 481
Lsp1109I GCAGC 2 cut(s) 375, 482
LweI GCATC 1 cut(s) 702
MabI ACCWGGT 1 cut(s) 662
MaeI CTAG 1 cut(s) 248
MaeII ACGT 4 cut(s) 294, 524, 608, 614
MaeIII GTNAC 2 cut(s) 679, 702
MalI GATC 3 cut(s) 17, 157, 209
MbiI CCGCTC 1 cut(s) 84
MboI GATC 3 cut(s) 15, 155, 207
MboII GAAGA 3 cut(s) 217, 445, 682
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 2 cut(s) 139, 404
Mly113I GGCGCC 3 cut(s) 39, 228, 270
MmeI TCCRAC 1 cut(s) 107
Mph1103I ATGCAT 1 cut(s) 717
MroI TCCGGA 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 238
MslI CAYNNNNRTG 1 cut(s) 675
MspR9I CCNGG 8 cut(s) 24, 94, 139, 165, 202, 323, 380, 664
MvaI CCWGG 2 cut(s) 380, 664
MwoI GCNNNNNNNGC 7 cut(s) 222, 248, 276, 334, 363, 470, 579
NaeI GCCGGC 1 cut(s) 240
NarI GGCGCC 3 cut(s) 39, 228, 270
NciI CCSGG 6 cut(s) 24, 94, 139, 165, 202, 323
NdeI CATATG 1 cut(s) 717
NdeII GATC 3 cut(s) 15, 155, 207
NgoMIV GCCGGC 1 cut(s) 238
NlaIII CATG 5 cut(s) 120, 563, 680, 703, 710
NmuCI GTSAC 1 cut(s) 679
NsiI ATGCAT 1 cut(s) 717
NspI RCATGY 2 cut(s) 563, 710
PciI ACATGT 2 cut(s) 559, 706
PcsI WCGNNNNNNNCGW 3 cut(s) 300, 516, 521
PdiI GCCGGC 1 cut(s) 240
PflFI GACNNNGTC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 117
PfoI TCCNGGA 2 cut(s) 92, 200
PkrI GCNGC 9 cut(s) 8, 86, 197, 227, 237, 339, 365, 486, 497
PluTI GGCGCC 3 cut(s) 42, 231, 273
PmaCI CACGTG 2 cut(s) 525, 615
PmlI CACGTG 2 cut(s) 525, 615
Ppu21I YACGTR 3 cut(s) 525, 609, 615
PscI ACATGT 2 cut(s) 559, 706
Psp6I CCWGG 2 cut(s) 378, 662
PspCI CACGTG 2 cut(s) 525, 615
PspGI CCWGG 2 cut(s) 378, 662
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 4 cut(s) 96, 135, 136, 141
PstI CTGCAG 1 cut(s) 500
PsuI RGATCY 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 100
RsaI GTAC 5 cut(s) 108, 314, 607, 611, 668
RsaNI GTAC 5 cut(s) 107, 313, 606, 610, 667
RseI CAYNNNNRTG 1 cut(s) 675
SalI GTCGAC 1 cut(s) 305
SatI GCNGC 9 cut(s) 7, 85, 196, 226, 236, 338, 364, 485, 496
Sau3AI GATC 3 cut(s) 15, 155, 207
Sau96I GGNCC 4 cut(s) 96, 135, 136, 141
ScrFI CCNGG 8 cut(s) 24, 94, 139, 165, 202, 323, 380, 664
SduI GDGCHC 2 cut(s) 139, 404
SetI ASST 9 cut(s) 55, 101, 297, 321, 527, 584, 611, 617, 668
SexAI ACCWGGT 1 cut(s) 662
SfaNI GCATC 1 cut(s) 702
SfcI CTRYAG 1 cut(s) 496
SfoI GGCGCC 3 cut(s) 40, 229, 271
SgrDI CGTCGACG 1 cut(s) 305
SinI GGWCC 2 cut(s) 96, 141
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SnaBI TACGTA 1 cut(s) 609
SspDI GGCGCC 3 cut(s) 38, 227, 269
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 8 cut(s) 22, 92, 137, 163, 200, 321, 378, 662
StyI CCWWGG 1 cut(s) 405
TaiI ACGT 4 cut(s) 297, 527, 611, 617
TaqI TCGA 2 cut(s) 210, 306
TauI GCSGC 7 cut(s) 9, 87, 198, 228, 238, 340, 487
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 2 cut(s) 363, 495
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 1 cut(s) 688
TspRI CASTG 1 cut(s) 505
Tth111I GACNNNGTC 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 117
VpaK11BI GGWCC 2 cut(s) 96, 141
XagI CCTNNNNNAGG 1 cut(s) 661
XceI RCATGY 2 cut(s) 563, 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 1 cut(s) 248
ZraI GACGTC 1 cut(s) 295
Zsp2I ATGCAT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.