Rorug05G0507800

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003319
Physical Location & Seq
Forward (+)
69059939 .. 69067722
7784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0507800.1

Sequence Viewer

Length: 2910 bp
ATGAGATATCTATGGGAGGAGCTGGTGTTGGAGGTCATTGATGATAACTTAAGCATCACCGCGGATGAACTTTTTCAGGTGTTAGAAGTGTCAGGATGCTTGTCAAGAGGATTCCAGGTAGAGTTTGAGTCAGCTCAATGTGTCTTAGATGCTGATATGAATTCTAAATCATATACCACACACTCTCTTGCTATTGTACCTGTTGGCAACACATTGGATAGTAATTTGTTAGTTGATCATGATGATTTTATGAAGAATGTATTGGACTGTAGGGCTGGGATTGCTGATGAACAAAGTGAAGGTTTGTCGATCATTGAAAGGACCTCCCGACAAAACTTCAATGGAACTTCTTCTGCCAAATCTGATATTAGCAGTGATGGAATTTGTGTTACTAAATCCAAAGGCAGAAGAACAGCAAATTGGCTACCTGTGGAACTTCATAAAGAGTCTTGCCCTAGTGCTGTTGATAAGTACTTGGGTAAGGGACGGCTGCCTTCAGGGGAGTTACAAACAGCTGTTAGGAAGCATCTTTTATATTTGGGTTGGAAAGTAGAGTATATGATAGATAAGGGCAGAATGAGATACCGGTACTTGTCGCCTGATGGAGAACCCGAATACTCTCTTATTAAAGTGTGCAGTAACTTGAGAAAGTCCTCGAAAGATTCACAATTTGCAATCTCTCAAGATGCACCTCAGTGTTTGCATGGTTCACCTGGACAGCTTCTTGTCACTGAAGAACCACAAGAGATTCAGCATCCTAATTATTGTCCTCAACAGGTAGCGTCTCCTTTTTCCAATTCCAAGTTACATCCTGAGGTATTTATTTACAAACCCGAATATTGCCCTCAAGCAGTTGTGGCATATGTAGACTCTCCCATAAGGGGACCCAGAAGTTTGAGAGTAAAAACAATGCGGTCTAAAGCAAAGAAGCACCTCTCTGCTGTGGGGTGGGAGTTCTACTACTCAGAAATAAGATCATCAAATAGCTTGCGCTTCAAATCTCCCAAAGGAAATGTATACAACTCACTTCTGGATGCCTGCAAAGTCTGTATGGATGAAGAAAATTCTGAAAGAAGACCTGCTGAATGCAGGTATGTCATTGACGAAGACGAGGCCCACTTAATTAAGAAAAAAATATTTTCTGTAGCAAATAGAAAATGCAAAAGGAATAGAATTCGTAGCTTGTTAAACAGTGGACCTCACTTGCTTCACGAATGCCCAAAGGATCAATGTGCTAACCCTCCAAAGTTGAAAAGGCGAAAGGCATCTGCATCTTCCTCTGGGTTTAGAAATGGTTCTGGTGTTAGTCAGCCAACTCGTGTGCTCAGGTCAAGCAAACGAGTCCAGGAAGTGGTTACTCCTACTTCCACACACCAGAATCCCCGCACTGTCTTATCTTGGTTGATAGACAATAATGTGGTTTTGCCAAGGGAAAAAGTACATTATTGTAGCAGAAAGGGTGGTCCTTCAATGGCAGAAGGGAAAATAAGTAGAGAGGGGATCAAGTGCAGCTGTTGCCAAAAGGTGTTTACTCTTAGCTGCTTTGAGAGTCATGCTGGCTTCAATGAGACTCATGCTGGCTGCAGTAACCACAGACCTGCTTCCAATATTTTTCTGGATGATGGTAGGTCTCTCTTGGATTGCCAGATGCAAATTATACTTGAAAGAAGGAAGAGGACTTGTAGAACAGAACCACGCCATAGGATGAAGGGAAATCGAGTTCGAGGCGAGAGTGATTACATATGTACTGTGTGTCACTATGGTGGTGATTTAATCTTATGTGACGAATGTCCGTCATCATTTCACAAGAGTTGCGTTGGGTTGAAGGATGTTCCAGATGGTGAGTGGTTCTGTCCATCTTGCTGTTGTGGATTATGTGGCCAAAGAAAACTCAAAGAAGACAAAGAACCTATTATGCATTCTGATTTTCTCACATGTGGTCAATGCGAGCACAAATATCACACTGGGTGCTTGAGAAAAGGAGGTGTGGATATGTCGGAAAGTGATTCAAAAGGAAATTGGTTTTGCAGCAAGAATTGTAAAAAGATATCTTTGGGCCTCCACAAGCTTTTAGGGAAACAATTTCCAGCGGGTGTTGGCAATTTAACTTGGTCACTTCTGAAGTCCATGAAATCTGATAGTGATGATGCTACTGAACCTGACAATGATGCCATAACGGAGAGTTTTAGCAGGCTTAGTATTGCCCTTGATGTGATGCACGAGTGTTTTGAGCCTGTTAAGGAACCTCTTACCAGGAGAGATCTTGCAGAAGATATCATCTTCAGTAGAGGGTCAAATCTCAATCGCTTGAACTTTCAAGGGTTCTATACCGTGCTATTGGAAAGAAATGATGAGCTAATCACTGTGGCTACTGTAAGGATCTACGGAAAGAAGGTGGCCGAAGTACCTCTTGTTGCTACCAGATTTCAATATCGTCGACTTGGAATGTGTCGTGTGTTGATGAATTTACTTGAAAAGATGCTTATGGATTTAGGTGTGGAGAGATTGGTTTTGCCCGCTGTCCCCAGTGTGCTAAACACATGGACTACCGCATTTGGGTTTTCAAGAATGACAGAGTCTGAGAGGCTACAGTTTCTGGATCATACTTTCCTGGATTTTCAGGATACCATTATGTGTCAGAAACTTTTAATGAAGATCTCTCCAGCTGAACCAAGCCTGTTGAAAGGAACACAGCCTAATATTTCTGGAAGTGGTGATAATATTGATCTTGATGGGTCCAGTTCTGTCTCTGAAGTGTGTCAACTGGAAAAAACAGAGGATAGCCAAACCGTATTCCAGGGACTTGAAAGTGCTGCAGGGAAAAGGAGAGCATGCGTTGATAAGAACTGTCCAGAGTTCAAGCAGTACAAGCGAATGAGGAAATCAAATTTGGCTGCCATAGTTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

969

Amino Acids

109.0

Weight (kDa)

8.53

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7028 PF22970 144 - 218 3.9e-21 Domain of unknown function (DUF7028)
DUF7028 PF22970 276 - 354 1.1e-23 Domain of unknown function (DUF7028)
TDBD PF16135 494 - 551 8.4e-18 Tify domain binding domain
PHD-1st_NSD PF23011 579 - 621 5.3e-07 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD PF00628 582 - 621 3.7e-08 PHD-finger
IDM1_C PF23209 743 - 881 4.4e-55 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 1080, 1087, 1606
AccB7I CCANNNNNTGG 1 cut(s) 1351
AccI GTMKAC 3 cut(s) 867, 1017, 2437
AccII CGCG 1 cut(s) 62
AciI CCGC 7 cut(s) 60, 62, 913, 1384, 2090, 2517, 2550
AclWI GGATC 4 cut(s) 1233, 1508, 2387, 2607
AcoI YGGCCR 2 cut(s) 1879, 2397
AcsI RAATTY 6 cut(s) 160, 381, 1063, 1173, 2464, 2887
AcuI CTGAAG 5 cut(s) 480, 753, 2141, 2266, 2772
AdeI CACNNNGTG 1 cut(s) 1968
AfaI GTAC 7 cut(s) 198, 473, 590, 1440, 1747, 2406, 2867
AfiI CCNNNNNNNGG 3 cut(s) 881, 1351, 2556
AflII CTTAAG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 1934
AgeI ACCGGT 1 cut(s) 585
AjnI CCWGG 6 cut(s) 114, 712, 1344, 2252, 2610, 2796
AjuI GAANNNNNNNTTGG 6 cut(s) 245, 277, 403, 435, 2873, 2905
AleI CACNNNNGTG 2 cut(s) 694, 1761
AloI GAACNNNNNNTCC 2 cut(s) 1704, 1736
Alw21I GWGCWC 2 cut(s) 1326, 1953
Alw26I GTCTC 4 cut(s) 789, 1562, 1635, 2752
AlwI GGATC 4 cut(s) 1233, 1508, 2387, 2607
AlwNI CAGNNNCTG 2 cut(s) 2579, 2596
AoxI GGCC 4 cut(s) 1113, 1879, 2056, 2397
ApeKI GCWGC 7 cut(s) 490, 1509, 1539, 1581, 2028, 2813, 2894
ApoI RAATTY 6 cut(s) 160, 381, 1063, 1173, 2464, 2887
AsiGI ACCGGT 1 cut(s) 585
Asp700I GAANNNNTTC 3 cut(s) 72, 349, 1294
AspLEI GCGC 1 cut(s) 993
AspS9I GGNCC 7 cut(s) 321, 884, 1114, 1196, 1463, 2056, 2736
AsuHPI GGTGA 5 cut(s) 49, 702, 1778, 1853, 2726
AvaII GGWCC 5 cut(s) 321, 884, 1196, 1463, 2736
AxyI CCTNAGG 1 cut(s) 813
BalI TGGCCA 1 cut(s) 1881
BauI CACGAG 2 cut(s) 1317, 2219
BbsI GAAGAC 3 cut(s) 1081, 1113, 1905
Bbv12I GWGCWC 2 cut(s) 1326, 1953
BbvI GCAGC 7 cut(s) 477, 1521, 1526, 1568, 2040, 2800, 2881
BccI CCATC 6 cut(s) 371, 596, 1616, 1832, 1864, 2726
BceAI ACGGC 1 cut(s) 503
BciT130I CCWGG 6 cut(s) 116, 714, 1346, 2254, 2612, 2798
BciVI GTATCC 1 cut(s) 2617
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 4 cut(s) 789, 1562, 1635, 2752
BfaI CTAG 1 cut(s) 456
BfmI CTRYAG 5 cut(s) 268, 1143, 1582, 2588, 2814
BfrI CTTAAG 1 cut(s) 49
BfuAI ACCTGC 3 cut(s) 1080, 1087, 1606
BfuI GTATCC 1 cut(s) 2617
BglII AGATCT 2 cut(s) 2260, 2655
BisI GCNGC 7 cut(s) 491, 1510, 1540, 1582, 2029, 2814, 2895
BlsI GCNGC 7 cut(s) 492, 1511, 1541, 1583, 2030, 2815, 2896
BmcAI AGTACT 1 cut(s) 473
Bme1390I CCNGG 6 cut(s) 116, 714, 1346, 2254, 2612, 2798
Bme18I GGWCC 5 cut(s) 321, 884, 1196, 1463, 2736
BmgT120I GGNCC 7 cut(s) 321, 884, 1114, 1196, 1463, 2056, 2736
BmiI GGNNCC 4 cut(s) 885, 886, 2244, 2737
BmrFI CCNGG 6 cut(s) 116, 714, 1346, 2254, 2612, 2798
BmrI ACTGGG 2 cut(s) 1974, 2520
BmuI ACTGGG 2 cut(s) 1974, 2520
BoxI GACNNNNGTC 1 cut(s) 1788
BpiI GAAGAC 3 cut(s) 1081, 1113, 1905
BpmI CTGGAG 1 cut(s) 2646
Bpu10I CCTNAGC 1 cut(s) 1325
BpuEI CTTGAG 4 cut(s) 664, 666, 831, 1993
BsaI GGTCTC 1 cut(s) 1635
BsaJI CCNNGG 3 cut(s) 60, 1427, 2797
BsaWI WCCGGW 1 cut(s) 585
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 3 cut(s) 881, 1351, 2556
Bse118I RCCGGY 1 cut(s) 585
Bse1I ACTGG 4 cut(s) 1969, 2526, 2739, 2769
Bse21I CCTNAGG 1 cut(s) 813
BseBI CCWGG 6 cut(s) 116, 714, 1346, 2254, 2612, 2798
BseDI CCNNGG 3 cut(s) 60, 1427, 2797
BseGI GGATG 9 cut(s) 70, 101, 754, 808, 1039, 1060, 1624, 1710, 1834
BseLI CCNNNNNNNGG 3 cut(s) 881, 1351, 2556
BseMII CTCAG 5 cut(s) 707, 804, 978, 1339, 2571
BseNI ACTGG 4 cut(s) 1969, 2526, 2739, 2769
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 7 cut(s) 477, 1521, 1526, 1568, 2040, 2800, 2881
BseYI CCCAGC 1 cut(s) 275
BsgI GTGCAG 2 cut(s) 655, 1528
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 4 cut(s) 1115, 1881, 2058, 2399
BshTI ACCGGT 1 cut(s) 585
BsiHKAI GWGCWC 2 cut(s) 1326, 1953
BsiSI CCGG 1 cut(s) 586
BslFI GGGAC 4 cut(s) 498, 897, 2507, 2814
BslI CCNNNNNNNGG 3 cut(s) 881, 1351, 2556
BsmAI GTCTC 4 cut(s) 789, 1562, 1635, 2752
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 4 cut(s) 498, 897, 2507, 2814
BsmI GAATGC 3 cut(s) 1091, 1220, 1918
BsnI GGCC 4 cut(s) 1115, 1881, 2058, 2399
Bso31I GGTCTC 1 cut(s) 1635
Bsp1286I GDGCHC 2 cut(s) 1326, 1953
BspACI CCGC 7 cut(s) 60, 62, 913, 1384, 2090, 2517, 2550
BspANI GGCC 4 cut(s) 1115, 1881, 2058, 2399
BspCNI CTCAG 5 cut(s) 706, 805, 977, 1338, 2572
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 4 cut(s) 885, 886, 2244, 2737
BspMAI CTGCAG 2 cut(s) 1586, 2818
BspMI ACCTGC 3 cut(s) 1080, 1087, 1606
BspPI GGATC 4 cut(s) 1233, 1508, 2387, 2607
BspTI CTTAAG 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 1635
BsrFI RCCGGY 1 cut(s) 585
BsrI ACTGG 4 cut(s) 1969, 2526, 2739, 2769
BssAI RCCGGY 1 cut(s) 585
BssECI CCNNGG 3 cut(s) 60, 1427, 2797
BssNAI GTATAC 1 cut(s) 1018
BssSI CACGAG 2 cut(s) 1317, 2219
BssT1I CCWWGG 1 cut(s) 1427
Bst1107I GTATAC 1 cut(s) 1018
Bst2BI CACGAG 2 cut(s) 1317, 2219
Bst2UI CCWGG 6 cut(s) 116, 714, 1346, 2254, 2612, 2798
Bst6I CTCTTC 1 cut(s) 1667
BstAFI CTTAAG 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 1515
BstC8I GCNNGC 8 cut(s) 989, 1039, 1558, 1579, 1949, 2192, 2517, 2833
BstDEI CTNAG 8 cut(s) 145, 693, 813, 964, 1325, 1535, 2195, 2580
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 9 cut(s) 70, 101, 754, 808, 1039, 1060, 1624, 1710, 1834
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 993
BstMAI GTCTC 4 cut(s) 789, 1562, 1635, 2752
BstMWI GCNNNNNNNGC 4 cut(s) 281, 857, 1515, 2869
BstNI CCWGG 6 cut(s) 116, 714, 1346, 2254, 2612, 2798
BstNSI RCATGY 2 cut(s) 1938, 2835
BstPAI GACNNNNGTC 1 cut(s) 1788
BstSCI CCNGG 6 cut(s) 114, 712, 1344, 2252, 2610, 2796
BstSFI CTRYAG 5 cut(s) 268, 1143, 1582, 2588, 2814
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 7 cut(s) 477, 1521, 1526, 1568, 2040, 2800, 2881
BstV2I GAAGAC 3 cut(s) 1081, 1113, 1905
BstX2I RGATCY 3 cut(s) 2260, 2379, 2655
BstYI RGATCY 3 cut(s) 2260, 2379, 2655
BstZ17I GTATAC 1 cut(s) 1018
Bsu36I CCTNAGG 1 cut(s) 813
BsuI GTATCC 1 cut(s) 2617
BsuRI GGCC 4 cut(s) 1115, 1881, 2058, 2399
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 9 cut(s) 70, 101, 754, 808, 1039, 1060, 1624, 1710, 1834
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 8 cut(s) 379, 701, 729, 1198, 1386, 1962, 2361, 2533
BveI ACCTGC 3 cut(s) 1080, 1087, 1606
Cac8I GCNNGC 8 cut(s) 989, 1039, 1558, 1579, 1949, 2192, 2517, 2833
CaiI CAGNNNCTG 2 cut(s) 2579, 2596
CciI TCATGA 1 cut(s) 238
CfoI GCGC 1 cut(s) 993
Cfr10I RCCGGY 1 cut(s) 585
Cfr13I GGNCC 7 cut(s) 321, 884, 1114, 1196, 1463, 2056, 2736
Cfr42I CCGCGG 1 cut(s) 63
CseI GACGC 1 cut(s) 771
Csp6I GTAC 7 cut(s) 197, 472, 589, 1439, 1746, 2405, 2866
CspAI ACCGGT 1 cut(s) 585
CviAII CATG 8 cut(s) 239, 704, 1553, 1574, 1935, 2128, 2541, 2832
CviQI GTAC 7 cut(s) 197, 472, 589, 1439, 1746, 2405, 2866
DdeI CTNAG 8 cut(s) 145, 693, 813, 964, 1325, 1535, 2195, 2580
DraIII CACNNNGTG 1 cut(s) 1968
EaeI YGGCCR 2 cut(s) 1879, 2397
Eam1104I CTCTTC 1 cut(s) 1667
EarI CTCTTC 1 cut(s) 1667
Eco130I CCWWGG 1 cut(s) 1427
Eco31I GGTCTC 1 cut(s) 1635
Eco32I GATATC 3 cut(s) 8, 2049, 2275
Eco47I GGWCC 5 cut(s) 321, 884, 1196, 1463, 2736
Eco57I CTGAAG 5 cut(s) 480, 753, 2141, 2266, 2772
Eco81I CCTNAGG 1 cut(s) 813
EcoO109I RGGNCCY 2 cut(s) 321, 884
EcoRI GAATTC 2 cut(s) 160, 1173
EcoRII CCWGG 6 cut(s) 114, 712, 1344, 2252, 2610, 2796
EcoRV GATATC 3 cut(s) 8, 2049, 2275
EcoT14I CCWWGG 1 cut(s) 1427
EcoT22I ATGCAT 1 cut(s) 1920
ErhI CCWWGG 1 cut(s) 1427
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 8 cut(s) 242, 707, 1556, 1577, 1938, 2131, 2544, 2835
FalI AAGNNNNNCTT 2 cut(s) 2394, 2426
FaqI GGGAC 4 cut(s) 498, 897, 2507, 2814
FatI CATG 8 cut(s) 238, 703, 1552, 1573, 1934, 2127, 2540, 2831
FauI CCCGC 3 cut(s) 1391, 2083, 2524
FauNDI CATATG 2 cut(s) 862, 1742
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 3 cut(s) 867, 1017, 2437
Fnu4HI GCNGC 7 cut(s) 491, 1510, 1540, 1582, 2029, 2814, 2895
FokI GGATG 9 cut(s) 77, 108, 741, 795, 1046, 1067, 1631, 1717, 1841
Fsp4HI GCNGC 7 cut(s) 491, 1510, 1540, 1582, 2029, 2814, 2895
FspBI CTAG 1 cut(s) 456
GlaI GCGC 1 cut(s) 992
GluI GCNGC 7 cut(s) 491, 1510, 1540, 1582, 2029, 2814, 2895
GsaI CCCAGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 2646
HaeIII GGCC 4 cut(s) 1115, 1881, 2058, 2399
HapII CCGG 1 cut(s) 586
HgaI GACGC 1 cut(s) 771
HhaI GCGC 1 cut(s) 993
Hin1II CATG 8 cut(s) 242, 707, 1556, 1577, 1938, 2131, 2544, 2835
Hin6I GCGC 1 cut(s) 991
HinP1I GCGC 1 cut(s) 991
HincII GTYRAC 2 cut(s) 2438, 2762
HindII GTYRAC 2 cut(s) 2438, 2762
HindIII AAGCTT 1 cut(s) 2066
HpaII CCGG 1 cut(s) 586
HphI GGTGA 5 cut(s) 49, 702, 1778, 1853, 2726
Hpy166II GTNNAC 7 cut(s) 710, 868, 1018, 1196, 1530, 2438, 2762
Hpy8I GTNNAC 7 cut(s) 710, 868, 1018, 1196, 1530, 2438, 2762
Hpy99I CGWCG 1 cut(s) 2439
HpyAV CCTTC 8 cut(s) 293, 504, 1472, 1476, 1662, 1702, 1819, 2386
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 857, 1515, 2869
HpyF3I CTNAG 8 cut(s) 145, 693, 813, 964, 1325, 1535, 2195, 2580
Hsp92II CATG 8 cut(s) 242, 707, 1556, 1577, 1938, 2131, 2544, 2835
HspAI GCGC 1 cut(s) 991
KflI GGGWCCC 1 cut(s) 884
Ksp22I TGATCA 1 cut(s) 235
KspI CCGCGG 1 cut(s) 63
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 7 cut(s) 477, 1521, 1526, 1568, 2040, 2800, 2881
MaeI CTAG 1 cut(s) 456
MflI RGATCY 3 cut(s) 2260, 2379, 2655
MhlI GDGCHC 2 cut(s) 1326, 1953
MlsI TGGCCA 1 cut(s) 1881
MluNI TGGCCA 1 cut(s) 1881
MlyI GAGTC 7 cut(s) 137, 455, 863, 1350, 1558, 1564, 2585
MmeI TCCRAC 3 cut(s) 9, 524, 1977
Mox20I TGGCCA 1 cut(s) 1881
Mph1103I ATGCAT 1 cut(s) 1920
MroXI GAANNNNTTC 3 cut(s) 72, 349, 1294
MscI TGGCCA 1 cut(s) 1881
MseI TTAA 9 cut(s) 50, 627, 1121, 1125, 1187, 1772, 2105, 2238, 2648
MslI CAYNNNNRTG 2 cut(s) 694, 1761
Msp20I TGGCCA 1 cut(s) 1881
MspA1I CMGCKG 6 cut(s) 62, 515, 1512, 2090, 2519, 2666
MspCI CTTAAG 1 cut(s) 49
MspI CCGG 1 cut(s) 586
MspR9I CCNGG 6 cut(s) 116, 714, 1346, 2254, 2612, 2798
Mva1269I GAATGC 3 cut(s) 1091, 1220, 1918
MvaI CCWGG 6 cut(s) 116, 714, 1346, 2254, 2612, 2798
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 4 cut(s) 281, 857, 1515, 2869
NdeI CATATG 2 cut(s) 862, 1742
NlaIII CATG 8 cut(s) 242, 707, 1556, 1577, 1938, 2131, 2544, 2835
NlaIV GGNNCC 4 cut(s) 885, 886, 2244, 2737
NmuCI GTSAC 4 cut(s) 727, 1754, 1781, 2112
NsiI ATGCAT 1 cut(s) 1920
NspI RCATGY 2 cut(s) 1938, 2835
OliI CACNNNNGTG 2 cut(s) 694, 1761
PacI TTAATTAA 1 cut(s) 1125
PaeI GCATGC 1 cut(s) 2835
PagI TCATGA 1 cut(s) 238
PciI ACATGT 1 cut(s) 1934
PctI GAATGC 3 cut(s) 1091, 1220, 1918
PdmI GAANNNNTTC 3 cut(s) 72, 349, 1294
PfeI GAWTC 5 cut(s) 111, 662, 748, 1378, 2006
PflFI GACNNNGTC 1 cut(s) 2575
PflMI CCANNNNNTGG 1 cut(s) 1351
PfoI TCCNGGA 2 cut(s) 1344, 2610
PinAI ACCGGT 1 cut(s) 585
PkrI GCNGC 7 cut(s) 492, 1511, 1541, 1583, 2030, 2815, 2896
PleI GAGTC 7 cut(s) 136, 454, 863, 1349, 1557, 1564, 2584
PpsI GAGTC 7 cut(s) 136, 454, 863, 1349, 1557, 1564, 2584
PpuMI RGGWCCY 2 cut(s) 321, 884
PscI ACATGT 1 cut(s) 1934
PshAI GACNNNNGTC 1 cut(s) 1788
Psp5II RGGWCCY 2 cut(s) 321, 884
Psp6I CCWGG 6 cut(s) 114, 712, 1344, 2252, 2610, 2796
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 6 cut(s) 114, 712, 1344, 2252, 2610, 2796
PspN4I GGNNCC 4 cut(s) 885, 886, 2244, 2737
PspPI GGNCC 7 cut(s) 321, 884, 1114, 1196, 1463, 2056, 2736
PspPPI RGGWCCY 2 cut(s) 321, 884
PstI CTGCAG 2 cut(s) 1586, 2818
PstNI CAGNNNCTG 2 cut(s) 2579, 2596
PsuI RGATCY 3 cut(s) 2260, 2379, 2655
PsyI GACNNNGTC 1 cut(s) 2575
PvuII CAGCTG 3 cut(s) 515, 1512, 2666
RsaI GTAC 7 cut(s) 198, 473, 590, 1440, 1747, 2406, 2867
RsaNI GTAC 7 cut(s) 197, 472, 589, 1439, 1746, 2405, 2866
RseI CAYNNNNRTG 2 cut(s) 694, 1761
SacII CCGCGG 1 cut(s) 63
SalI GTCGAC 1 cut(s) 2436
SaqAI TTAA 9 cut(s) 50, 627, 1121, 1125, 1187, 1772, 2105, 2238, 2648
SatI GCNGC 7 cut(s) 491, 1510, 1540, 1582, 2029, 2814, 2895
Sau96I GGNCC 7 cut(s) 321, 884, 1114, 1196, 1463, 2056, 2736
ScaI AGTACT 1 cut(s) 473
SchI GAGTC 7 cut(s) 137, 455, 863, 1350, 1558, 1564, 2585
ScrFI CCNGG 6 cut(s) 116, 714, 1346, 2254, 2612, 2798
SduI GDGCHC 2 cut(s) 1326, 1953
SfcI CTRYAG 5 cut(s) 268, 1143, 1582, 2588, 2814
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
SinI GGWCC 5 cut(s) 321, 884, 1196, 1463, 2736
SmiMI CAYNNNNRTG 2 cut(s) 694, 1761
SmlI CTYRAG 5 cut(s) 49, 643, 681, 846, 1972
SmoI CTYRAG 5 cut(s) 49, 643, 681, 846, 1972
SphI GCATGC 1 cut(s) 2835
SsiI CCGC 7 cut(s) 60, 62, 913, 1384, 2090, 2517, 2550
SspI AATATT 5 cut(s) 839, 1137, 1609, 2701, 2722
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 6 cut(s) 114, 712, 1344, 2252, 2610, 2796
StyI CCWWGG 1 cut(s) 1427
TaqI TCGA 5 cut(s) 308, 656, 1717, 1723, 2437
TatI WGTACW 4 cut(s) 471, 1438, 1745, 2865
TfiI GAWTC 5 cut(s) 111, 662, 748, 1378, 2006
Tru1I TTAA 9 cut(s) 50, 627, 1121, 1125, 1187, 1772, 2105, 2238, 2648
Tru9I TTAA 9 cut(s) 50, 627, 1121, 1125, 1187, 1772, 2105, 2238, 2648
TscAI CASTG 8 cut(s) 379, 701, 736, 1198, 1393, 1969, 2368, 2533
TseFI GTSAC 4 cut(s) 727, 1754, 1781, 2112
TseI GCWGC 7 cut(s) 490, 1509, 1539, 1581, 2028, 2813, 2894
Tsp45I GTSAC 4 cut(s) 727, 1754, 1781, 2112
TspGWI ACGGA 3 cut(s) 1782, 2192, 2400
TspRI CASTG 8 cut(s) 379, 701, 736, 1198, 1393, 1969, 2368, 2533
Tth111I GACNNNGTC 1 cut(s) 2575
Van91I CCANNNNNTGG 1 cut(s) 1351
Vha464I CTTAAG 1 cut(s) 49
VpaK11BI GGWCC 5 cut(s) 321, 884, 1196, 1463, 2736
XapI RAATTY 6 cut(s) 160, 381, 1063, 1173, 2464, 2887
XceI RCATGY 2 cut(s) 1938, 2835
XcmI CCANNNNNNNNNTGG 2 cut(s) 1612, 1842
XmiI GTMKAC 3 cut(s) 867, 1017, 2437
XmnI GAANNNNTTC 3 cut(s) 72, 349, 1294
XspI CTAG 1 cut(s) 456
ZrmI AGTACT 1 cut(s) 473
Zsp2I ATGCAT 1 cut(s) 1920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.