Rroxscaffold_7G00215960

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003319
Physical Location & Seq
Forward (+)
66637283 .. 66638933
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215960.1

Sequence Viewer

Length: 1011 bp
ATGGACAACTTAATTCTCAGCCTCCTTCTCATACTGGTCACCTCCAAAGGCGTTTCCGGTGCTACATTCACCTTCGTCAACAGATGTGACTACACAGTTTGGCCTGGGATACTCGCAAATGCAAACAGTCCTAGGCTCGACAGTACAGGATTCGAGCTCCCAAGACAAACTGCCCGAACATTCCAAGCCCCGACCGGCTGGTCCGGCCGTTTCTGGGGCCGAACCGGCTGCACTTTCGACGGTTCCGGGTCCGGGTCATGCCAAACCGGCGACTGCGGCTCCGGCACCGTGGAATGCAACGGCGCCGGAGCCGCCCCGCCGGCTACTCTAGCCGAGTTCACCCTCGGCACCGGCGGGCAGGACTTCTATGACGTCAGCCTTGTCGACGGGTACAACTTGCCCGTTTTCGTGGAAGGGACTGGCGGGTCGGGTCAGTGTGCTTCCACCGGGTGCTCCACGGATCTGAACCTGCAGTGCCCGACTGAGCTGAGGAGCGAGGACGGGAGCGCGTGCAAGAGCGCGTGTGAGGCGTTTGGGAGCCCTGAGTACTGCTGTAGCGGCGCGTATGGCTCACCCTCGACTTGTCGGCCGTCGGTTTACTCCGAGATGTTTAAGGCTGCTTGTCCCAAGTCGTATAGCTACGCGTACGACGACGCTACGAGTACGTTTACGTGCACCGGAGCTGATTATACGGTGACGTTTTGCCCTTCATCTCCAAGTCAGAAATCTTCTAGAGATTCTACACCAATGACAGGAGGAGCAACTTCGCAAGATGGGGTTGCCGGGGCAGACCCGGGGTTCACTTATTCGGGTTCGACTGCAGGGTCGGTTCCGGGTACTGGGTCGGTTCCGGTTACTGGGTCAGGAGGTTCTGGATCTGGTGAGGCAATGCTGGCAGATGGGTCATGGCTAGCTGGTTTAGCCATGGGAGACTCAGCAAGGGCATTGTGTGCCTCAACCCTAATGACTTTATCAACTTTATTTATTATTTTGTCCTATCTTGTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

336

Amino Acids

34.14

Weight (kDa)

4.27

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 27 - 236 1.5e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 199, 424, 823
AatII GACGTC 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 477
AccB1I GGYRCC 3 cut(s) 284, 302, 347
AccI GTMKAC 1 cut(s) 384
AccII CGCG 4 cut(s) 509, 521, 563, 644
AciI CCGC 6 cut(s) 276, 312, 317, 354, 423, 558
AclWI GGATC 2 cut(s) 468, 883
AcoI YGGCCR 2 cut(s) 205, 587
AcyI GRCGYC 2 cut(s) 303, 372
AdeI CACNNNGTG 1 cut(s) 450
AfaI GTAC 6 cut(s) 145, 392, 548, 647, 664, 838
AfiI CCNNNNNNNGG 5 cut(s) 214, 252, 752, 839, 857
AflIII ACRYGT 1 cut(s) 642
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 5 cut(s) 157, 487, 639, 683, 914
AluI AGCT 5 cut(s) 157, 487, 639, 683, 914
Alw21I GWGCWC 3 cut(s) 159, 455, 677
Alw26I GTCTC 1 cut(s) 924
Alw44I GTGCAC 1 cut(s) 673
AlwI GGATC 2 cut(s) 468, 883
Ama87I CYCGRG 1 cut(s) 793
AoxI GGCC 4 cut(s) 101, 205, 217, 587
ApaLI GTGCAC 1 cut(s) 673
ApeKI GCWGC 2 cut(s) 228, 617
AspA2I CCTAGG 1 cut(s) 131
AspLEI GCGC 4 cut(s) 305, 509, 521, 563
AspS9I GGNCC 3 cut(s) 201, 217, 249
AsuC2I CCSGG 7 cut(s) 247, 253, 448, 784, 794, 795, 834
AsuHPI GGTGA 6 cut(s) 31, 61, 331, 564, 706, 893
AsuNHI GCTAGC 1 cut(s) 910
AvaI CYCGRG 1 cut(s) 793
AvaII GGWCC 2 cut(s) 201, 249
AvrII CCTAGG 1 cut(s) 131
BaeGI GKGCMC 2 cut(s) 479, 677
BanI GGYRCC 3 cut(s) 284, 302, 347
BanII GRGCYC 2 cut(s) 159, 542
Bbv12I GWGCWC 3 cut(s) 159, 455, 677
BbvCI CCTCAGC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 215, 604
BccI CCATC 2 cut(s) 767, 893
BceAI ACGGC 3 cut(s) 192, 316, 574
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 1 cut(s) 105
BciVI GTATCC 1 cut(s) 102
BcnI CCSGG 7 cut(s) 247, 253, 448, 784, 794, 795, 834
BcoDI GTCTC 1 cut(s) 924
BfaI CTAG 4 cut(s) 132, 329, 732, 911
BfmI CTRYAG 3 cut(s) 470, 553, 819
BfoI RGCGCY 1 cut(s) 306
BfuAI ACCTGC 1 cut(s) 477
BfuI GTATCC 1 cut(s) 102
BglI GCCNNNNNGGC 3 cut(s) 225, 267, 320
BisI GCNGC 5 cut(s) 229, 277, 312, 559, 618
BlnI CCTAGG 1 cut(s) 131
BlsI GCNGC 5 cut(s) 230, 278, 313, 560, 619
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 8 cut(s) 105, 247, 253, 448, 784, 794, 795, 834
Bme18I GGWCC 2 cut(s) 201, 249
BmeT110I CYCGRG 1 cut(s) 793
BmgT120I GGNCC 3 cut(s) 201, 217, 249
BmrFI CCNGG 8 cut(s) 105, 247, 253, 448, 784, 794, 795, 834
BmrI ACTGGG 2 cut(s) 849, 867
BmtI GCTAGC 1 cut(s) 914
BmuI ACTGGG 2 cut(s) 849, 867
Bpu10I CCTNAGC 1 cut(s) 488
BpuMI CCSGG 7 cut(s) 247, 253, 448, 784, 794, 795, 834
BsaAI YACGTR 1 cut(s) 672
BsaHI GRCGYC 2 cut(s) 303, 372
BsaJI CCNNGG 9 cut(s) 104, 131, 288, 343, 456, 783, 793, 794, 924
BsaWI WCCGGW 3 cut(s) 56, 677, 850
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 5 cut(s) 214, 252, 752, 839, 857
Bse118I RCCGGY 5 cut(s) 194, 224, 266, 319, 350
Bse1I ACTGG 4 cut(s) 39, 424, 844, 862
Bse3DI GCAATG 1 cut(s) 894
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 9 cut(s) 104, 131, 288, 343, 456, 783, 793, 794, 924
BseLI CCNNNNNNNGG 5 cut(s) 214, 252, 752, 839, 857
BseMI GCAATG 1 cut(s) 894
BseMII CTCAG 5 cut(s) 31, 474, 479, 534, 948
BseNI ACTGG 4 cut(s) 39, 424, 844, 862
BseRI GAGGAG 2 cut(s) 505, 771
BseSI GKGCMC 2 cut(s) 479, 677
BseX3I CGGCCG 2 cut(s) 205, 587
BseXI GCAGC 2 cut(s) 215, 604
BsgI GTGCAG 1 cut(s) 214
Bsh1236I CGCG 4 cut(s) 509, 521, 563, 644
Bsh1285I CGRYCG 3 cut(s) 195, 208, 590
BshFI GGCC 4 cut(s) 103, 207, 219, 589
BshNI GGYRCC 3 cut(s) 284, 302, 347
BsiEI CGRYCG 3 cut(s) 195, 208, 590
BsiHKAI GWGCWC 3 cut(s) 159, 455, 677
BsiHKCI CYCGRG 1 cut(s) 793
BsiWI CGTACG 1 cut(s) 645
BslFI GGGAC 2 cut(s) 430, 609
BslI CCNNNNNNNGG 5 cut(s) 214, 252, 752, 839, 857
BsmAI GTCTC 1 cut(s) 924
BsmFI GGGAC 2 cut(s) 430, 609
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 4 cut(s) 103, 207, 219, 589
BsoBI CYCGRG 1 cut(s) 793
Bsp1286I GDGCHC 5 cut(s) 159, 455, 479, 542, 677
Bsp143I GATC 2 cut(s) 460, 875
Bsp19I CCATGG 1 cut(s) 924
BspACI CCGC 6 cut(s) 276, 312, 317, 354, 423, 558
BspANI GGCC 4 cut(s) 103, 207, 219, 589
BspCNI CTCAG 5 cut(s) 30, 475, 480, 535, 947
BspFNI CGCG 4 cut(s) 509, 521, 563, 644
BspMAI CTGCAG 2 cut(s) 474, 823
BspMI ACCTGC 1 cut(s) 477
BspOI GCTAGC 1 cut(s) 914
BspPI GGATC 2 cut(s) 468, 883
BspT107I GGYRCC 3 cut(s) 284, 302, 347
BsrDI GCAATG 1 cut(s) 894
BsrFI RCCGGY 5 cut(s) 194, 224, 266, 319, 350
BsrI ACTGG 4 cut(s) 39, 424, 844, 862
BssAI RCCGGY 5 cut(s) 194, 224, 266, 319, 350
BssECI CCNNGG 9 cut(s) 104, 131, 288, 343, 456, 783, 793, 794, 924
BssMI GATC 2 cut(s) 460, 875
BssNI GRCGYC 2 cut(s) 303, 372
BssT1I CCWWGG 2 cut(s) 131, 924
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 6 cut(s) 97, 128, 143, 242, 289, 694
BstACI GRCGYC 2 cut(s) 303, 372
BstAPI GCANNNNNTGC 1 cut(s) 950
BstBAI YACGTR 1 cut(s) 672
BstC8I GCNNGC 5 cut(s) 321, 356, 511, 894, 912
BstDEI CTNAG 5 cut(s) 17, 483, 488, 543, 934
BstDSI CCRYGG 3 cut(s) 288, 456, 924
BstEII GGTNACC 1 cut(s) 37
BstFNI CGCG 4 cut(s) 509, 521, 563, 644
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 4 cut(s) 305, 509, 521, 563
BstKTI GATC 2 cut(s) 463, 878
BstMAI GTCTC 1 cut(s) 924
BstMBI GATC 2 cut(s) 460, 875
BstMCI CGRYCG 3 cut(s) 195, 208, 590
BstNI CCWGG 1 cut(s) 105
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 8 cut(s) 103, 245, 251, 446, 782, 792, 793, 832
BstSFI CTRYAG 3 cut(s) 470, 553, 819
BstSLI GKGCMC 2 cut(s) 479, 677
BstUI CGCG 4 cut(s) 509, 521, 563, 644
BstV1I GCAGC 2 cut(s) 215, 604
BstX2I RGATCY 2 cut(s) 460, 875
BstYI RGATCY 2 cut(s) 460, 875
BstZI CGGCCG 2 cut(s) 205, 587
BsuI GTATCC 1 cut(s) 102
BsuRI GGCC 4 cut(s) 103, 207, 219, 589
BtgI CCRYGG 3 cut(s) 288, 456, 924
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 2 cut(s) 440, 479
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 5 cut(s) 321, 356, 511, 894, 912
CfoI GCGC 4 cut(s) 305, 509, 521, 563
Cfr10I RCCGGY 5 cut(s) 194, 224, 266, 319, 350
Cfr13I GGNCC 3 cut(s) 201, 217, 249
Cfr9I CCCGGG 1 cut(s) 793
CseI GACGC 1 cut(s) 662
Csp6I GTAC 6 cut(s) 144, 391, 547, 646, 663, 837
CviAII CATG 3 cut(s) 258, 906, 925
CviQI GTAC 6 cut(s) 144, 391, 547, 646, 663, 837
DdeI CTNAG 5 cut(s) 17, 483, 488, 543, 934
DinI GGCGCC 1 cut(s) 304
DpnI GATC 2 cut(s) 462, 877
DpnII GATC 2 cut(s) 460, 875
DraIII CACNNNGTG 1 cut(s) 450
DrdI GACNNNNNNGTC 3 cut(s) 199, 424, 823
DseDI GACNNNNNNGTC 3 cut(s) 199, 424, 823
EaeI YGGCCR 2 cut(s) 205, 587
EagI CGGCCG 2 cut(s) 205, 587
Ecl136II GAGCTC 1 cut(s) 157
EclXI CGGCCG 2 cut(s) 205, 587
Eco130I CCWWGG 2 cut(s) 131, 924
Eco24I GRGCYC 2 cut(s) 159, 542
Eco47I GGWCC 2 cut(s) 201, 249
Eco52I CGGCCG 2 cut(s) 205, 587
Eco53kI GAGCTC 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 793
Eco91I GGTNACC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 131, 924
EcoT38I GRGCYC 2 cut(s) 159, 542
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
ErhI CCWWGG 2 cut(s) 131, 924
FaeI CATG 3 cut(s) 261, 909, 928
FaiI YATR 8 cut(s) 32, 259, 369, 567, 636, 690, 907, 926
FaqI GGGAC 2 cut(s) 430, 609
FatI CATG 3 cut(s) 257, 905, 924
FauI CCCGC 3 cut(s) 324, 347, 416
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 5 cut(s) 229, 277, 312, 559, 618
FriOI GRGCYC 2 cut(s) 159, 542
Fsp4HI GCNGC 5 cut(s) 229, 277, 312, 559, 618
FspBI CTAG 4 cut(s) 132, 329, 732, 911
GlaI GCGC 4 cut(s) 304, 508, 520, 562
GluI GCNGC 5 cut(s) 229, 277, 312, 559, 618
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 4 cut(s) 103, 207, 219, 589
HgaI GACGC 1 cut(s) 662
HhaI GCGC 4 cut(s) 305, 509, 521, 563
Hin1I GRCGYC 2 cut(s) 303, 372
Hin1II CATG 3 cut(s) 261, 909, 928
Hin6I GCGC 4 cut(s) 303, 507, 519, 561
HinP1I GCGC 4 cut(s) 303, 507, 519, 561
HincII GTYRAC 2 cut(s) 79, 385
HindII GTYRAC 2 cut(s) 79, 385
HinfI GANTC 3 cut(s) 150, 737, 932
HphI GGTGA 6 cut(s) 31, 61, 331, 564, 706, 893
Hpy166II GTNNAC 7 cut(s) 79, 339, 385, 598, 669, 675, 801
Hpy188I TCNGA 3 cut(s) 465, 604, 723
Hpy188III TCNNGA 3 cut(s) 732, 864, 873
Hpy8I GTNNAC 7 cut(s) 79, 339, 385, 598, 669, 675, 801
Hpy99I CGWCG 5 cut(s) 242, 389, 595, 653, 656
HpyAV CCTTC 4 cut(s) 35, 82, 407, 717
HpyCH4III ACNGT 6 cut(s) 97, 128, 143, 242, 289, 694
HpyCH4IV ACGT 4 cut(s) 372, 665, 671, 698
HpyCH4V TGCA 7 cut(s) 122, 231, 297, 472, 513, 675, 821
HpyF3I CTNAG 5 cut(s) 17, 483, 488, 543, 934
HpySE526I ACGT 4 cut(s) 372, 665, 671, 698
Hsp92I GRCGYC 2 cut(s) 303, 372
Hsp92II CATG 3 cut(s) 261, 909, 928
HspAI GCGC 4 cut(s) 303, 507, 519, 561
KasI GGCGCC 1 cut(s) 302
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
Kzo9I GATC 2 cut(s) 460, 875
LmnI GCTCC 9 cut(s) 162, 284, 308, 458, 492, 504, 537, 680, 758
Lsp1109I GCAGC 2 cut(s) 215, 604
MaeI CTAG 4 cut(s) 132, 329, 732, 911
MaeII ACGT 4 cut(s) 372, 665, 671, 698
MaeIII GTNAC 4 cut(s) 37, 86, 694, 853
MalI GATC 2 cut(s) 462, 877
MboI GATC 2 cut(s) 460, 875
MboII GAAGA 1 cut(s) 720
MflI RGATCY 2 cut(s) 460, 875
MhlI GDGCHC 5 cut(s) 159, 455, 479, 542, 677
MluCI AATT 1 cut(s) 12
MluI ACGCGT 1 cut(s) 642
Mly113I GGCGCC 1 cut(s) 303
MlyI GAGTC 1 cut(s) 926
MroNI GCCGGC 1 cut(s) 319
MseI TTAA 2 cut(s) 11, 612
MspR9I CCNGG 8 cut(s) 105, 247, 253, 448, 784, 794, 795, 834
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 4 cut(s) 509, 521, 563, 644
NaeI GCCGGC 1 cut(s) 321
NarI GGCGCC 1 cut(s) 303
NciI CCSGG 7 cut(s) 247, 253, 448, 784, 794, 795, 834
NcoI CCATGG 1 cut(s) 924
NdeII GATC 2 cut(s) 460, 875
NgoMIV GCCGGC 1 cut(s) 319
NheI GCTAGC 1 cut(s) 910
NlaIII CATG 3 cut(s) 261, 909, 928
NmeAIII GCCGAG 2 cut(s) 324, 358
NmuCI GTSAC 3 cut(s) 37, 86, 694
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PctI GAATGC 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 321
PfeI GAWTC 2 cut(s) 150, 737
Pfl23II CGTACG 1 cut(s) 645
PkrI GCNGC 5 cut(s) 230, 278, 313, 560, 619
PleI GAGTC 1 cut(s) 926
PluTI GGCGCC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 926
Ppu21I YACGTR 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 103
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 103
PspLI CGTACG 1 cut(s) 645
PspPI GGNCC 3 cut(s) 201, 217, 249
PstI CTGCAG 2 cut(s) 474, 823
PsuI RGATCY 2 cut(s) 460, 875
RsaI GTAC 6 cut(s) 145, 392, 548, 647, 664, 838
RsaNI GTAC 6 cut(s) 144, 391, 547, 646, 663, 837
SacI GAGCTC 1 cut(s) 159
SalI GTCGAC 1 cut(s) 383
SaqAI TTAA 2 cut(s) 11, 612
SatI GCNGC 5 cut(s) 229, 277, 312, 559, 618
Sau3AI GATC 2 cut(s) 460, 875
Sau96I GGNCC 3 cut(s) 201, 217, 249
ScaI AGTACT 1 cut(s) 548
SchI GAGTC 1 cut(s) 926
ScrFI CCNGG 8 cut(s) 105, 247, 253, 448, 784, 794, 795, 834
SduI GDGCHC 5 cut(s) 159, 455, 479, 542, 677
SfcI CTRYAG 3 cut(s) 470, 553, 819
SfoI GGCGCC 1 cut(s) 304
SgrAI CRCCGGYG 1 cut(s) 350
SinI GGWCC 2 cut(s) 201, 249
SmaI CCCGGG 1 cut(s) 795
Sse9I AATT 1 cut(s) 12
SsiI CCGC 6 cut(s) 276, 312, 317, 354, 423, 558
SspDI GGCGCC 1 cut(s) 302
SspMI CTAG 4 cut(s) 132, 329, 732, 911
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 8 cut(s) 103, 245, 251, 446, 782, 792, 793, 832
StyI CCWWGG 2 cut(s) 131, 924
TaaI ACNGT 6 cut(s) 97, 128, 143, 242, 289, 694
TaiI ACGT 4 cut(s) 375, 668, 674, 701
TaqI TCGA 6 cut(s) 138, 153, 237, 384, 578, 815
TasI AATT 1 cut(s) 12
TatI WGTACW 2 cut(s) 143, 546
TauI GCSGC 3 cut(s) 279, 314, 561
TfiI GAWTC 2 cut(s) 150, 737
Tru1I TTAA 2 cut(s) 11, 612
Tru9I TTAA 2 cut(s) 11, 612
TscAI CASTG 2 cut(s) 440, 479
TseFI GTSAC 3 cut(s) 37, 86, 694
TseI GCWGC 2 cut(s) 228, 617
Tsp45I GTSAC 3 cut(s) 37, 86, 694
TspDTI ATGAA 1 cut(s) 699
TspGWI ACGGA 1 cut(s) 473
TspMI CCCGGG 1 cut(s) 793
TspRI CASTG 2 cut(s) 440, 479
VneI GTGCAC 1 cut(s) 673
VpaK11BI GGWCC 2 cut(s) 201, 249
XbaI TCTAGA 1 cut(s) 731
XmaI CCCGGG 1 cut(s) 793
XmaJI CCTAGG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 4 cut(s) 132, 329, 732, 911
ZraI GACGTC 1 cut(s) 373
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.