pycom02g10220

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0003319
Physical Location & Seq
Reverse (-)
7061733 .. 7062792
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10220.1

Sequence Viewer

Length: 729 bp
ATGCTCAAATTTTTTAAGGTGCTCCTCTTAGTTAAATTTCTGGCTTCACTGACCACCACCACCACCTCCTCCTCCTCCTCCAGCCTCACTTCATTTTCTCACACAACATTTGCCATTTGCAGACTCTGTTTCTGTGTGAGAAAAAAACCCAACATTCTGTGCCATTCAAGATTTAATCCAATTTCTTACCACTTCACCTTCATTCTTCTAATCATTACCAAAGTACGGCCGCGAATTCTAGCCAGCGCCGCCAGCGACAAGCTCGACAGCACCGGCTTCGAGCTTCCCAAAGGCAGTTCCCGCGTTTTCCAAGCCCCGACCGGCTGGTCCGGTCGCTTCAGGGGCCGAACTGGCTGCAGCTTTGACGGTTCAGGTCGCGATTCTTGTTCGACCGGAGACTGCGCCTCGGGCGAGCTCGAGTGCAACGGTGCTGGAGCCGCGCCACCGGCCACCTTAGCCGAGTTCACACTTGGCTCGGGTTCTCAAGACTTCTATGACGTTAGCCTCGTTGACGGTTATAACTTACCAATGATCGTTGAGGGGAGTGGGGGAACCGGTGCGTGCCCGTCCACCGGGTGCGTTACGGACCTCGACCTTTGCGTTTTGGTGGGATATACATATGGTGGTTGTTGCAAGAGGGTTTTAATTTCTCTGATGGATGGTAAGTGTTGTCGTTTGGCGAACAAGTTTTCCCCTTTTACATACATATATGTGGCGGTTCGGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

243

Amino Acids

25.9

Weight (kDa)

8.81

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 74 - 225 5.1e-39 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
AasI GACNNNNNNGTC 1 cut(s) 325
AccII CGCG 4 cut(s) 232, 303, 378, 440
AciI CCGC 5 cut(s) 230, 249, 301, 438, 716
AcoI YGGCCR 2 cut(s) 227, 447
AcsI RAATTY 3 cut(s) 8, 35, 234
AcuI CTGAAG 1 cut(s) 322
AdeI CACNNNGTG 1 cut(s) 576
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 2 cut(s) 225, 572
AgeI ACCGGT 1 cut(s) 554
AgsI TTSAA 1 cut(s) 168
AloI GAACNNNNNNTCC 2 cut(s) 674, 706
AluBI AGCT 4 cut(s) 262, 283, 360, 415
AluI AGCT 4 cut(s) 262, 283, 360, 415
Alw21I GWGCWC 2 cut(s) 24, 417
Alw26I GTCTC 1 cut(s) 390
AlwNI CAGNNNCTG 1 cut(s) 126
Ama87I CYCGRG 3 cut(s) 406, 416, 475
AoxI GGCC 3 cut(s) 227, 343, 447
ApeKI GCWGC 2 cut(s) 354, 357
ApoI RAATTY 3 cut(s) 8, 35, 234
AsiGI ACCGGT 1 cut(s) 554
AspLEI GCGC 3 cut(s) 248, 404, 442
AspS9I GGNCC 3 cut(s) 327, 343, 586
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 3 cut(s) 406, 416, 475
AvaII GGWCC 2 cut(s) 327, 586
BaeGI GKGCMC 1 cut(s) 566
BanII GRGCYC 1 cut(s) 417
Bbv12I GWGCWC 2 cut(s) 24, 417
BbvI GCAGC 2 cut(s) 341, 369
BccI CCATC 2 cut(s) 649, 653
BceAI ACGGC 1 cut(s) 242
BcgI CGANNNNNNTGC 4 cut(s) 259, 293, 336, 370
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 2 cut(s) 355, 725
BfoI RGCGCY 1 cut(s) 249
BglI GCCNNNNNGGC 1 cut(s) 351
BisI GCNGC 5 cut(s) 230, 249, 355, 358, 438
BlsI GCNGC 5 cut(s) 231, 250, 356, 359, 439
Bme1390I CCNGG 1 cut(s) 574
Bme18I GGWCC 2 cut(s) 327, 586
BmeT110I CYCGRG 3 cut(s) 406, 416, 475
BmgT120I GGNCC 3 cut(s) 327, 343, 586
BmiI GGNNCC 3 cut(s) 344, 436, 553
BmrFI CCNGG 1 cut(s) 574
BpmI CTGGAG 2 cut(s) 64, 453
Bpu10I CCTNAGC 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 468
BpuMI CCSGG 1 cut(s) 574
BsaJI CCNNGG 1 cut(s) 405
BsaWI WCCGGW 3 cut(s) 329, 392, 554
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 572
Bse118I RCCGGY 4 cut(s) 272, 320, 445, 554
Bse1I ACTGG 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 664
BseLI CCNNNNNNNGG 2 cut(s) 225, 572
BseNI ACTGG 1 cut(s) 355
BseRI GAGGAG 5 cut(s) 14, 58, 61, 64, 67
BseSI GKGCMC 1 cut(s) 566
BseX3I CGGCCG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 341, 369
Bsh1236I CGCG 4 cut(s) 232, 303, 378, 440
Bsh1285I CGRYCG 4 cut(s) 230, 321, 334, 393
BshFI GGCC 3 cut(s) 229, 345, 449
BshTI ACCGGT 1 cut(s) 554
BsiEI CGRYCG 4 cut(s) 230, 321, 334, 393
BsiHKAI GWGCWC 2 cut(s) 24, 417
BsiHKCI CYCGRG 3 cut(s) 406, 416, 475
BsiSI CCGG 7 cut(s) 273, 321, 330, 393, 446, 555, 573
BslI CCNNNNNNNGG 2 cut(s) 225, 572
BsmAI GTCTC 1 cut(s) 390
BsnI GGCC 3 cut(s) 229, 345, 449
BsoBI CYCGRG 3 cut(s) 406, 416, 475
Bsp1286I GDGCHC 3 cut(s) 24, 417, 566
Bsp143I GATC 1 cut(s) 531
Bsp68I TCGCGA 1 cut(s) 378
BspACI CCGC 5 cut(s) 230, 249, 301, 438, 716
BspANI GGCC 3 cut(s) 229, 345, 449
BspFNI CGCG 4 cut(s) 232, 303, 378, 440
BspLI GGNNCC 3 cut(s) 344, 436, 553
BspMAI CTGCAG 1 cut(s) 359
BsrFI RCCGGY 4 cut(s) 272, 320, 445, 554
BsrI ACTGG 1 cut(s) 355
BssAI RCCGGY 4 cut(s) 272, 320, 445, 554
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 1 cut(s) 531
Bst4CI ACNGT 3 cut(s) 368, 428, 515
BstC8I GCNNGC 4 cut(s) 244, 253, 413, 562
BstDEI CTNAG 2 cut(s) 28, 454
BstF5I GGATG 1 cut(s) 664
BstFNI CGCG 4 cut(s) 232, 303, 378, 440
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 3 cut(s) 248, 404, 442
BstKTI GATC 1 cut(s) 534
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 1 cut(s) 531
BstMCI CGRYCG 4 cut(s) 230, 321, 334, 393
BstMWI GCNNNNNNNGC 9 cut(s) 248, 252, 300, 342, 351, 408, 437, 446, 455
BstSCI CCNGG 1 cut(s) 572
BstSFI CTRYAG 2 cut(s) 355, 725
BstSLI GKGCMC 1 cut(s) 566
BstUI CGCG 4 cut(s) 232, 303, 378, 440
BstV1I GCAGC 2 cut(s) 341, 369
BstZI CGGCCG 1 cut(s) 227
BsuRI GGCC 3 cut(s) 229, 345, 449
BtsCI GGATG 1 cut(s) 664
BtsIMutI CAGTG 1 cut(s) 47
BtuMI TCGCGA 1 cut(s) 378
Cac8I GCNNGC 4 cut(s) 244, 253, 413, 562
CaiI CAGNNNCTG 1 cut(s) 126
CfoI GCGC 3 cut(s) 248, 404, 442
Cfr10I RCCGGY 4 cut(s) 272, 320, 445, 554
Cfr13I GGNCC 3 cut(s) 327, 343, 586
Csp6I GTAC 1 cut(s) 224
CspAI ACCGGT 1 cut(s) 554
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 2 cut(s) 28, 454
DpnI GATC 1 cut(s) 533
DpnII GATC 1 cut(s) 531
DraIII CACNNNGTG 1 cut(s) 576
DrdI GACNNNNNNGTC 1 cut(s) 325
DseDI GACNNNNNNGTC 1 cut(s) 325
EaeI YGGCCR 2 cut(s) 227, 447
EagI CGGCCG 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 415
EclXI CGGCCG 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 327, 586
Eco52I CGGCCG 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 322
Eco88I CYCGRG 3 cut(s) 406, 416, 475
EcoICRI GAGCTC 1 cut(s) 415
EcoRI GAATTC 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 417
FauI CCCGC 1 cut(s) 308
FauNDI CATATG 1 cut(s) 619
Fnu4HI GCNGC 5 cut(s) 230, 249, 355, 358, 438
FokI GGATG 1 cut(s) 671
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 5 cut(s) 230, 249, 355, 358, 438
FspBI CTAG 1 cut(s) 239
GlaI GCGC 3 cut(s) 247, 403, 441
GluI GCNGC 5 cut(s) 230, 249, 355, 358, 438
GsuI CTGGAG 2 cut(s) 64, 453
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 3 cut(s) 229, 345, 449
HapII CCGG 7 cut(s) 273, 321, 330, 393, 446, 555, 573
HhaI GCGC 3 cut(s) 248, 404, 442
Hin6I GCGC 3 cut(s) 246, 402, 440
HinP1I GCGC 3 cut(s) 246, 402, 440
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 2 cut(s) 123, 380
HpaII CCGG 7 cut(s) 273, 321, 330, 393, 446, 555, 573
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 3 cut(s) 465, 511, 570
Hpy188I TCNGA 1 cut(s) 654
Hpy188III TCNNGA 3 cut(s) 168, 377, 485
Hpy8I GTNNAC 3 cut(s) 465, 511, 570
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 3 cut(s) 368, 428, 515
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 4 cut(s) 120, 357, 423, 633
HpyF10VI GCNNNNNNNGC 9 cut(s) 248, 252, 300, 342, 351, 408, 437, 446, 455
HpyF3I CTNAG 2 cut(s) 28, 454
HpySE526I ACGT 1 cut(s) 498
HspAI GCGC 3 cut(s) 246, 402, 440
Kzo9I GATC 1 cut(s) 531
LmnI GCTCC 2 cut(s) 27, 434
Lsp1109I GCAGC 2 cut(s) 341, 369
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 1 cut(s) 580
MalI GATC 1 cut(s) 533
MboI GATC 1 cut(s) 531
MboII GAAGA 1 cut(s) 197
MhlI GDGCHC 3 cut(s) 24, 417, 566
MluCI AATT 5 cut(s) 8, 35, 180, 234, 645
MlyI GAGTC 1 cut(s) 117
MseI TTAA 4 cut(s) 15, 33, 174, 644
MslI CAYNNNNRTG 1 cut(s) 710
MspI CCGG 7 cut(s) 273, 321, 330, 393, 446, 555, 573
MspR9I CCNGG 1 cut(s) 574
MvnI CGCG 4 cut(s) 232, 303, 378, 440
MwoI GCNNNNNNNGC 9 cut(s) 248, 252, 300, 342, 351, 408, 437, 446, 455
NciI CCSGG 1 cut(s) 574
NdeI CATATG 1 cut(s) 619
NdeII GATC 1 cut(s) 531
NlaIV GGNNCC 3 cut(s) 344, 436, 553
NmeAIII GCCGAG 1 cut(s) 484
NruI TCGCGA 1 cut(s) 378
PaeR7I CTCGAG 1 cut(s) 416
PcsI WCGNNNNNNNCGW 2 cut(s) 504, 597
PfeI GAWTC 1 cut(s) 380
PinAI ACCGGT 1 cut(s) 554
PkrI GCNGC 5 cut(s) 231, 250, 356, 359, 439
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PsiI TTATAA 1 cut(s) 519
Psp124BI GAGCTC 1 cut(s) 417
PspN4I GGNNCC 3 cut(s) 344, 436, 553
PspPI GGNCC 3 cut(s) 327, 343, 586
PspXI VCTCGAGB 1 cut(s) 416
PstI CTGCAG 1 cut(s) 359
PstNI CAGNNNCTG 1 cut(s) 126
RruI TCGCGA 1 cut(s) 378
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 710
SacI GAGCTC 1 cut(s) 417
SaqAI TTAA 4 cut(s) 15, 33, 174, 644
SatI GCNGC 5 cut(s) 230, 249, 355, 358, 438
Sau3AI GATC 1 cut(s) 531
Sau96I GGNCC 3 cut(s) 327, 343, 586
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 574
SduI GDGCHC 3 cut(s) 24, 417, 566
SfcI CTRYAG 2 cut(s) 355, 725
Sfr274I CTCGAG 1 cut(s) 416
SinI GGWCC 2 cut(s) 327, 586
SlaI CTCGAG 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 2 cut(s) 416, 483
SmoI CTYRAG 2 cut(s) 416, 483
Sse9I AATT 5 cut(s) 8, 35, 180, 234, 645
SsiI CCGC 5 cut(s) 230, 249, 301, 438, 716
SspMI CTAG 1 cut(s) 239
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 572
TaaI ACNGT 3 cut(s) 368, 428, 515
TaiI ACGT 1 cut(s) 501
TaqI TCGA 5 cut(s) 264, 279, 389, 417, 591
TasI AATT 5 cut(s) 8, 35, 180, 234, 645
TauI GCSGC 3 cut(s) 232, 251, 440
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 4 cut(s) 15, 33, 174, 644
Tru9I TTAA 4 cut(s) 15, 33, 174, 644
TscAI CASTG 1 cut(s) 54
TseI GCWGC 2 cut(s) 354, 357
TspDTI ATGAA 2 cut(s) 81, 190
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 1 cut(s) 54
VpaK11BI GGWCC 2 cut(s) 327, 586
XapI RAATTY 3 cut(s) 8, 35, 234
XhoI CTCGAG 1 cut(s) 416
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.