RLG00000015376

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003319
Physical Location & Seq
Forward (+)
65240312 .. 65242063
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015376

Sequence Viewer

Length: 1020 bp
ATGGACAACTTAATTCTCAGCCTACTTCTCATACTGGTCACCTCCAAAGGCGTTTCCGGTGCTACATTCACCTTCGTCAACAGATGTGACTACACAGTTTGGCCCGGGATTCTCGCAAATGCAAACAGTCCTAGGCTCGACAGCACAGGATTCGAGCTCCCAAGACAAACTGCCAGAACATTCCAAGCCCCGACCGGCTGGTCCGGCCGTTTCTGGGGCCGAACCGGCTGCACTTTCGACGGATCCGGGTCCGGGTCATGCCAAACCGGCGACTGCGGCTCCGGCACCGTGGAATGCAACGGCGCCGGAGCCGCCCCGCCGGCTACTCTAGCCGAGTTCACCCTCGGCACCGGCGGGCAGGACTTCTATGACGTCAGCCTAGTCGACGGGTACAACTTGCCCGTTTTCGTGGAAGGGACTGGCGGGTCGGGTCAGTGCGCTTCCACCGGGTGCTCCACGGATCTGAACCTGCAGTGCCCGACCGAGCTGAGGAGCGAGGACGGGAGCGCGTGCAAGAGCGCGTGTGAGGCGTTTGGGAGCCCTGAGTACTGCTGTAGCGGCGCGTACGGCTCACCCTCGACCTGTCGGCCGTCGGTTTACTCCGAGATGTTTAAGGCTGCTTGTCCCAAGTCGTATAGCTACGCGTACGACGATGCTACGAGTACGTTTACGTGCACCGGAGCTGATTATACGGTGACGTTTTGCCCTTCATCTCCAAGTCAGAAATCTTCTAGAGATTCAACACCAACGACGGGAGGAGCAACTTCACAAGATGGGGTTGCTGGGGCAGACCCAGGGTTCACTTATTCGGGTTCGACTGCAGGGTCGGTTCCGGGTACTGGGTCAGGAGGTTCTGGATCTGGTGAGGCAATGCTGACAGATGGGTCATGCCCCCTAACTCTCTCTCTGGCTTTTGCTCTTAAATCTGAACCCTTCGGAGAGATTTGCAGTGCTTTAGTGGTCACTGGAGTTTTGCCTAGCTTTGGTAGAAAAGCTGAACATTTCATCAAGATTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

340

Amino Acids

34.55

Weight (kDa)

4.48

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 27 - 236 1.6e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 199, 424, 823, 883
AatII GACGTC 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 477
AccB1I GGYRCC 3 cut(s) 284, 302, 347
AccI GTMKAC 1 cut(s) 384
AccII CGCG 4 cut(s) 509, 521, 563, 644
AciI CCGC 6 cut(s) 276, 312, 317, 354, 423, 558
AclWI GGATC 4 cut(s) 237, 250, 468, 865
AcoI YGGCCR 2 cut(s) 205, 587
AcyI GRCGYC 2 cut(s) 303, 372
AdeI CACNNNGTG 1 cut(s) 450
AfaI GTAC 6 cut(s) 392, 548, 566, 647, 664, 838
AfiI CCNNNNNNNGG 6 cut(s) 214, 252, 489, 752, 839, 983
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 1 cut(s) 741
AjnI CCWGG 1 cut(s) 793
AluBI AGCT 6 cut(s) 157, 487, 639, 683, 981, 995
AluI AGCT 6 cut(s) 157, 487, 639, 683, 981, 995
Alw21I GWGCWC 3 cut(s) 159, 455, 677
Alw44I GTGCAC 1 cut(s) 673
AlwI GGATC 4 cut(s) 237, 250, 468, 865
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 4 cut(s) 101, 205, 217, 587
ApaLI GTGCAC 1 cut(s) 673
ApeKI GCWGC 2 cut(s) 228, 617
AspA2I CCTAGG 1 cut(s) 131
AspLEI GCGC 5 cut(s) 305, 440, 509, 521, 563
AspS9I GGNCC 4 cut(s) 102, 201, 217, 249
AsuC2I CCSGG 6 cut(s) 105, 106, 247, 253, 448, 834
AsuHPI GGTGA 6 cut(s) 31, 61, 331, 564, 706, 875
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 201, 249
AvrII CCTAGG 1 cut(s) 131
BaeGI GKGCMC 2 cut(s) 479, 677
BamHI GGATCC 1 cut(s) 242
BanI GGYRCC 3 cut(s) 284, 302, 347
BanII GRGCYC 2 cut(s) 159, 542
Bbv12I GWGCWC 3 cut(s) 159, 455, 677
BbvCI CCTCAGC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 215, 604
BccI CCATC 2 cut(s) 767, 875
BceAI ACGGC 4 cut(s) 192, 316, 574, 583
BcgI CGANNNNNNTGC 4 cut(s) 133, 167, 210, 244
BciT130I CCWGG 1 cut(s) 795
BcnI CCSGG 6 cut(s) 105, 106, 247, 253, 448, 834
BfaI CTAG 6 cut(s) 132, 329, 380, 732, 978, 1018
BfmI CTRYAG 3 cut(s) 470, 553, 819
BfoI RGCGCY 1 cut(s) 306
BfuAI ACCTGC 1 cut(s) 477
BglI GCCNNNNNGGC 3 cut(s) 225, 267, 320
BisI GCNGC 5 cut(s) 229, 277, 312, 559, 618
BlnI CCTAGG 1 cut(s) 131
BlsI GCNGC 5 cut(s) 230, 278, 313, 560, 619
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 7 cut(s) 105, 106, 247, 253, 448, 795, 834
Bme18I GGWCC 2 cut(s) 201, 249
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 4 cut(s) 102, 201, 217, 249
BmrFI CCNGG 7 cut(s) 105, 106, 247, 253, 448, 795, 834
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 1 cut(s) 643
BmuI ACTGGG 1 cut(s) 849
BpmI CTGGAG 1 cut(s) 987
Bpu10I CCTNAGC 1 cut(s) 488
BpuMI CCSGG 6 cut(s) 105, 106, 247, 253, 448, 834
BsaAI YACGTR 1 cut(s) 672
BsaHI GRCGYC 2 cut(s) 303, 372
BsaJI CCNNGG 7 cut(s) 104, 131, 288, 343, 456, 793, 794
BsaWI WCCGGW 2 cut(s) 56, 677
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 6 cut(s) 214, 252, 489, 752, 839, 983
Bse118I RCCGGY 5 cut(s) 194, 224, 266, 319, 350
Bse1I ACTGG 4 cut(s) 39, 424, 844, 970
Bse3DI GCAATG 1 cut(s) 876
BseBI CCWGG 1 cut(s) 795
BseDI CCNNGG 7 cut(s) 104, 131, 288, 343, 456, 793, 794
BseLI CCNNNNNNNGG 6 cut(s) 214, 252, 489, 752, 839, 983
BseMI GCAATG 1 cut(s) 876
BseMII CTCAG 3 cut(s) 31, 479, 534
BseNI ACTGG 4 cut(s) 39, 424, 844, 970
BseRI GAGGAG 2 cut(s) 505, 771
BseSI GKGCMC 2 cut(s) 479, 677
BseX3I CGGCCG 2 cut(s) 205, 587
BseXI GCAGC 2 cut(s) 215, 604
BseYI CCCAGC 1 cut(s) 782
BsgI GTGCAG 1 cut(s) 214
Bsh1236I CGCG 4 cut(s) 509, 521, 563, 644
Bsh1285I CGRYCG 4 cut(s) 195, 208, 483, 590
BshFI GGCC 4 cut(s) 103, 207, 219, 589
BshNI GGYRCC 3 cut(s) 284, 302, 347
BsiEI CGRYCG 4 cut(s) 195, 208, 483, 590
BsiHKAI GWGCWC 3 cut(s) 159, 455, 677
BsiHKCI CYCGRG 1 cut(s) 104
BsiWI CGTACG 2 cut(s) 564, 645
BslFI GGGAC 2 cut(s) 430, 609
BslI CCNNNNNNNGG 6 cut(s) 214, 252, 489, 752, 839, 983
BsmFI GGGAC 2 cut(s) 430, 609
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 4 cut(s) 103, 207, 219, 589
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 5 cut(s) 159, 455, 479, 542, 677
Bsp143I GATC 3 cut(s) 242, 460, 857
BspACI CCGC 6 cut(s) 276, 312, 317, 354, 423, 558
BspANI GGCC 4 cut(s) 103, 207, 219, 589
BspCNI CTCAG 3 cut(s) 30, 480, 535
BspFNI CGCG 4 cut(s) 509, 521, 563, 644
BspMAI CTGCAG 2 cut(s) 474, 823
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 4 cut(s) 237, 250, 468, 865
BspT107I GGYRCC 3 cut(s) 284, 302, 347
BsrDI GCAATG 1 cut(s) 876
BsrFI RCCGGY 5 cut(s) 194, 224, 266, 319, 350
BsrI ACTGG 4 cut(s) 39, 424, 844, 970
BssAI RCCGGY 5 cut(s) 194, 224, 266, 319, 350
BssECI CCNNGG 7 cut(s) 104, 131, 288, 343, 456, 793, 794
BssMI GATC 3 cut(s) 242, 460, 857
BssNI GRCGYC 2 cut(s) 303, 372
BssT1I CCWWGG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 4 cut(s) 97, 128, 289, 694
BstACI GRCGYC 2 cut(s) 303, 372
BstBAI YACGTR 1 cut(s) 672
BstC8I GCNNGC 3 cut(s) 321, 356, 511
BstDEI CTNAG 3 cut(s) 17, 488, 543
BstDSI CCRYGG 2 cut(s) 288, 456
BstEII GGTNACC 1 cut(s) 37
BstFNI CGCG 4 cut(s) 509, 521, 563, 644
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 5 cut(s) 305, 440, 509, 521, 563
BstKTI GATC 3 cut(s) 245, 463, 860
BstMBI GATC 3 cut(s) 242, 460, 857
BstMCI CGRYCG 4 cut(s) 195, 208, 483, 590
BstNI CCWGG 1 cut(s) 795
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 7 cut(s) 103, 104, 245, 251, 446, 793, 832
BstSFI CTRYAG 3 cut(s) 470, 553, 819
BstSLI GKGCMC 2 cut(s) 479, 677
BstUI CGCG 4 cut(s) 509, 521, 563, 644
BstV1I GCAGC 2 cut(s) 215, 604
BstX2I RGATCY 3 cut(s) 242, 460, 857
BstYI RGATCY 3 cut(s) 242, 460, 857
BstZI CGGCCG 2 cut(s) 205, 587
BsuRI GGCC 4 cut(s) 103, 207, 219, 589
BtgI CCRYGG 2 cut(s) 288, 456
BtsI GCAGTG 2 cut(s) 479, 955
BtsIMutI CAGTG 4 cut(s) 440, 479, 955, 963
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 3 cut(s) 321, 356, 511
CfoI GCGC 5 cut(s) 305, 440, 509, 521, 563
Cfr10I RCCGGY 5 cut(s) 194, 224, 266, 319, 350
Cfr13I GGNCC 4 cut(s) 102, 201, 217, 249
Cfr9I CCCGGG 1 cut(s) 104
Csp6I GTAC 6 cut(s) 391, 547, 565, 646, 663, 837
CviAII CATG 2 cut(s) 258, 888
CviQI GTAC 6 cut(s) 391, 547, 565, 646, 663, 837
DdeI CTNAG 3 cut(s) 17, 488, 543
DinI GGCGCC 1 cut(s) 304
DpnI GATC 3 cut(s) 244, 462, 859
DpnII GATC 3 cut(s) 242, 460, 857
DraIII CACNNNGTG 1 cut(s) 450
DrdI GACNNNNNNGTC 4 cut(s) 199, 424, 823, 883
DseDI GACNNNNNNGTC 4 cut(s) 199, 424, 823, 883
EaeI YGGCCR 2 cut(s) 205, 587
EagI CGGCCG 2 cut(s) 205, 587
Ecl136II GAGCTC 1 cut(s) 157
EclXI CGGCCG 2 cut(s) 205, 587
Eco130I CCWWGG 1 cut(s) 131
Eco24I GRGCYC 2 cut(s) 159, 542
Eco47I GGWCC 2 cut(s) 201, 249
Eco52I CGGCCG 2 cut(s) 205, 587
Eco53kI GAGCTC 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 793
EcoT14I CCWWGG 1 cut(s) 131
EcoT38I GRGCYC 2 cut(s) 159, 542
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 2 cut(s) 261, 891
FaiI YATR 6 cut(s) 32, 259, 369, 636, 690, 889
FaqI GGGAC 2 cut(s) 430, 609
FatI CATG 2 cut(s) 257, 887
FauI CCCGC 3 cut(s) 324, 347, 416
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 5 cut(s) 229, 277, 312, 559, 618
FriOI GRGCYC 2 cut(s) 159, 542
Fsp4HI GCNGC 5 cut(s) 229, 277, 312, 559, 618
FspBI CTAG 6 cut(s) 132, 329, 380, 732, 978, 1018
GlaI GCGC 5 cut(s) 304, 439, 508, 520, 562
GluI GCNGC 5 cut(s) 229, 277, 312, 559, 618
GsaI CCCAGC 1 cut(s) 786
GsuI CTGGAG 1 cut(s) 987
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 4 cut(s) 103, 207, 219, 589
HhaI GCGC 5 cut(s) 305, 440, 509, 521, 563
Hin1I GRCGYC 2 cut(s) 303, 372
Hin1II CATG 2 cut(s) 261, 891
Hin6I GCGC 5 cut(s) 303, 438, 507, 519, 561
HinP1I GCGC 5 cut(s) 303, 438, 507, 519, 561
HincII GTYRAC 2 cut(s) 79, 385
HindII GTYRAC 2 cut(s) 79, 385
HinfI GANTC 3 cut(s) 109, 150, 737
HphI GGTGA 6 cut(s) 31, 61, 331, 564, 706, 875
Hpy166II GTNNAC 7 cut(s) 79, 339, 385, 598, 669, 675, 801
Hpy188I TCNGA 5 cut(s) 465, 604, 723, 928, 938
Hpy188III TCNNGA 4 cut(s) 732, 846, 855, 1009
Hpy8I GTNNAC 7 cut(s) 79, 339, 385, 598, 669, 675, 801
Hpy99I CGWCG 5 cut(s) 242, 389, 595, 653, 754
HpyAV CCTTC 4 cut(s) 82, 407, 717, 943
HpyCH4III ACNGT 4 cut(s) 97, 128, 289, 694
HpyCH4IV ACGT 4 cut(s) 372, 665, 671, 698
HpyCH4V TGCA 8 cut(s) 122, 231, 297, 472, 513, 675, 821, 948
HpyF3I CTNAG 3 cut(s) 17, 488, 543
HpySE526I ACGT 4 cut(s) 372, 665, 671, 698
Hsp92I GRCGYC 2 cut(s) 303, 372
Hsp92II CATG 2 cut(s) 261, 891
HspAI GCGC 5 cut(s) 303, 438, 507, 519, 561
KasI GGCGCC 1 cut(s) 302
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
Kzo9I GATC 3 cut(s) 242, 460, 857
LmnI GCTCC 9 cut(s) 162, 284, 308, 458, 492, 504, 537, 680, 758
Lsp1109I GCAGC 2 cut(s) 215, 604
LweI GCATC 1 cut(s) 643
MaeI CTAG 6 cut(s) 132, 329, 380, 732, 978, 1018
MaeII ACGT 4 cut(s) 372, 665, 671, 698
MaeIII GTNAC 4 cut(s) 37, 86, 694, 961
MalI GATC 3 cut(s) 244, 462, 859
MboI GATC 3 cut(s) 242, 460, 857
MboII GAAGA 1 cut(s) 720
MflI RGATCY 3 cut(s) 242, 460, 857
MhlI GDGCHC 5 cut(s) 159, 455, 479, 542, 677
MluCI AATT 1 cut(s) 12
MluI ACGCGT 1 cut(s) 642
Mly113I GGCGCC 1 cut(s) 303
MnlI CCTC 9 cut(s) 52, 353, 483, 490, 520, 586, 749, 842, 859
MroNI GCCGGC 1 cut(s) 319
MseI TTAA 3 cut(s) 11, 612, 921
MspR9I CCNGG 7 cut(s) 105, 106, 247, 253, 448, 795, 834
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 1 cut(s) 795
MvnI CGCG 4 cut(s) 509, 521, 563, 644
NaeI GCCGGC 1 cut(s) 321
NarI GGCGCC 1 cut(s) 303
NciI CCSGG 6 cut(s) 105, 106, 247, 253, 448, 834
NdeII GATC 3 cut(s) 242, 460, 857
NgoMIV GCCGGC 1 cut(s) 319
NlaIII CATG 2 cut(s) 261, 891
NmeAIII GCCGAG 2 cut(s) 324, 358
NmuCI GTSAC 4 cut(s) 37, 86, 694, 961
PasI CCCWGGG 1 cut(s) 794
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PctI GAATGC 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 321
PfeI GAWTC 3 cut(s) 109, 150, 737
Pfl23II CGTACG 2 cut(s) 564, 645
PkrI GCNGC 5 cut(s) 230, 278, 313, 560, 619
PluTI GGCGCC 1 cut(s) 306
Ppu21I YACGTR 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 793
PspEI GGTNACC 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 782
PspGI CCWGG 1 cut(s) 793
PspLI CGTACG 2 cut(s) 564, 645
PspPI GGNCC 4 cut(s) 102, 201, 217, 249
PstI CTGCAG 2 cut(s) 474, 823
PsuI RGATCY 3 cut(s) 242, 460, 857
RsaI GTAC 6 cut(s) 392, 548, 566, 647, 664, 838
RsaNI GTAC 6 cut(s) 391, 547, 565, 646, 663, 837
SacI GAGCTC 1 cut(s) 159
SalI GTCGAC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 11, 612, 921
SatI GCNGC 5 cut(s) 229, 277, 312, 559, 618
Sau3AI GATC 3 cut(s) 242, 460, 857
Sau96I GGNCC 4 cut(s) 102, 201, 217, 249
ScaI AGTACT 1 cut(s) 548
ScrFI CCNGG 7 cut(s) 105, 106, 247, 253, 448, 795, 834
SduI GDGCHC 5 cut(s) 159, 455, 479, 542, 677
SfaNI GCATC 1 cut(s) 643
SfcI CTRYAG 3 cut(s) 470, 553, 819
SfoI GGCGCC 1 cut(s) 304
SgrAI CRCCGGYG 1 cut(s) 350
SinI GGWCC 2 cut(s) 201, 249
SmaI CCCGGG 1 cut(s) 106
Sse9I AATT 1 cut(s) 12
SsiI CCGC 6 cut(s) 276, 312, 317, 354, 423, 558
SspDI GGCGCC 1 cut(s) 302
SspMI CTAG 6 cut(s) 132, 329, 380, 732, 978, 1018
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 7 cut(s) 103, 104, 245, 251, 446, 793, 832
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 4 cut(s) 97, 128, 289, 694
TaiI ACGT 4 cut(s) 375, 668, 674, 701
TaqI TCGA 6 cut(s) 138, 153, 237, 384, 578, 815
TaqII GACCGA 1 cut(s) 497
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 546
TauI GCSGC 3 cut(s) 279, 314, 561
TfiI GAWTC 3 cut(s) 109, 150, 737
Tru1I TTAA 3 cut(s) 11, 612, 921
Tru9I TTAA 3 cut(s) 11, 612, 921
TscAI CASTG 4 cut(s) 440, 479, 955, 970
TseFI GTSAC 4 cut(s) 37, 86, 694, 961
TseI GCWGC 2 cut(s) 228, 617
Tsp45I GTSAC 4 cut(s) 37, 86, 694, 961
TspDTI ATGAA 2 cut(s) 699, 994
TspGWI ACGGA 2 cut(s) 255, 473
TspMI CCCGGG 1 cut(s) 104
TspRI CASTG 4 cut(s) 440, 479, 955, 970
VneI GTGCAC 1 cut(s) 673
VpaK11BI GGWCC 2 cut(s) 201, 249
XbaI TCTAGA 1 cut(s) 731
XmaI CCCGGG 1 cut(s) 104
XmaJI CCTAGG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 6 cut(s) 132, 329, 380, 732, 978, 1018
ZraI GACGTC 1 cut(s) 373
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.