Rw6G001840

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003319
Physical Location & Seq
Reverse (-)
2962451 .. 2964988
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G001840.1

Sequence Viewer

Length: 969 bp
ATGCTCCATTTATCCTCCAGGCGTTGCGTTTCCGGTGCTACATTCACCTTCGTCAACAGATGTGACTACACAGTTTGGCCTGGGATTCTCGCAAATGCAAACAGTCCTAGGCTCGACAGTACAGGATTCGAGCTCCCAAGACAAACTGCCAGAACATTCCAAGCCCCGACCGGCTGGTCCGGCCGTTTCTGGGGCCGAACCGGCTGCACTTTCGACGGATCCGGGTCCGGGTCATGCCAAACCGGCGACTGCGGCTCCGGCACCGTGGAATGCAACGGCGCCGGAGCCGCCCCGCCGGCTACTCTAGCCGAGTTCACCCTCGGCACCGGCGGGCAGGACTTCTATGACGTCAGCCTCGTCGACGGGTACAACTTGCCCGTTTTCGTGGAAGGGACTGGCGGGTCGGGTCAGTGCGCTTCCACCGGGTGCTCCACGGATCTGAACCTGCAGTGCCCGACTGAGCTGAGGAGCGAGGATGGGAGCGCGTGCAAGAGCGCGTGTGAGGCGTTTGGGAGCCCTGAGTACTGCTGTAGCGGCGCGTATGGCTCACCCTCGACTTGTCGGCCGTCGGTTTACTCCGAGATGTTTAAGGCTGCTTGTCCCAAGTCGTACAGCTACGCGTACGACGACGCTACGAGTACGTTTACGTGCACCGGAGCTGATTATACGGTGACGTTTTGCCCTTCATCTCCAAGTCAGAAATCTTCTAGAGATTCAACACCAATGACAGGAGGAACAACTTCACAAGATGGGGTTGCTGGGGCAGACCCGGGGTTCACTTATTCGGGTTCGACTGCAGGGTCGGTTCCGGTTACTGGGTCAGGAGGTTCTGGATCTGGTGAGGCAATGCTGACAGATGGGTCATGGTTAGCTGGTTTAGCCATGGGAGACTCACCAAGGGCATTGTGTCCCTCAACCCTAATGTCTTTATCAACTTTATTTATTATCTTGTCCTATCTTTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

322

Amino Acids

33.05

Weight (kDa)

4.44

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 19 - 228 1.3e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 175, 400, 799, 859
AatII GACGTC 1 cut(s) 351
Acc36I ACCTGC 1 cut(s) 453
AccB1I GGYRCC 3 cut(s) 260, 278, 323
AccI GTMKAC 1 cut(s) 360
AccII CGCG 4 cut(s) 485, 497, 539, 620
AciI CCGC 6 cut(s) 252, 288, 293, 330, 399, 534
AclWI GGATC 4 cut(s) 213, 226, 444, 841
AcoI YGGCCR 2 cut(s) 181, 563
AcyI GRCGYC 2 cut(s) 279, 348
AdeI CACNNNGTG 1 cut(s) 426
AfaI GTAC 6 cut(s) 121, 368, 524, 611, 623, 640
AfiI CCNNNNNNNGG 4 cut(s) 190, 228, 728, 815
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 1 cut(s) 717
AjnI CCWGG 2 cut(s) 17, 79
AluBI AGCT 5 cut(s) 133, 463, 615, 659, 872
AluI AGCT 5 cut(s) 133, 463, 615, 659, 872
Alw21I GWGCWC 3 cut(s) 135, 431, 653
Alw26I GTCTC 1 cut(s) 882
Alw44I GTGCAC 1 cut(s) 649
AlwI GGATC 4 cut(s) 213, 226, 444, 841
Ama87I CYCGRG 1 cut(s) 769
AoxI GGCC 4 cut(s) 77, 181, 193, 563
ApaLI GTGCAC 1 cut(s) 649
ApeKI GCWGC 2 cut(s) 204, 593
Asp700I GAANNNNTTC 1 cut(s) 739
AspA2I CCTAGG 1 cut(s) 107
AspLEI GCGC 5 cut(s) 281, 416, 485, 497, 539
AspS9I GGNCC 3 cut(s) 177, 193, 225
AsuC2I CCSGG 5 cut(s) 223, 229, 424, 770, 771
AsuHPI GGTGA 6 cut(s) 37, 307, 540, 682, 851, 885
AvaI CYCGRG 1 cut(s) 769
AvaII GGWCC 2 cut(s) 177, 225
AvrII CCTAGG 1 cut(s) 107
BaeGI GKGCMC 2 cut(s) 455, 653
BamHI GGATCC 1 cut(s) 218
BanI GGYRCC 3 cut(s) 260, 278, 323
BanII GRGCYC 2 cut(s) 135, 518
Bbv12I GWGCWC 3 cut(s) 135, 431, 653
BbvCI CCTCAGC 1 cut(s) 464
BbvI GCAGC 2 cut(s) 191, 580
BccI CCATC 3 cut(s) 470, 743, 851
BceAI ACGGC 3 cut(s) 168, 292, 550
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BciT130I CCWGG 2 cut(s) 19, 81
BcnI CCSGG 5 cut(s) 223, 229, 424, 770, 771
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 3 cut(s) 108, 305, 708
BfmI CTRYAG 3 cut(s) 446, 529, 795
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 453
BglI GCCNNNNNGGC 3 cut(s) 201, 243, 296
BisI GCNGC 5 cut(s) 205, 253, 288, 535, 594
BlnI CCTAGG 1 cut(s) 107
BlsI GCNGC 5 cut(s) 206, 254, 289, 536, 595
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 7 cut(s) 19, 81, 223, 229, 424, 770, 771
Bme18I GGWCC 2 cut(s) 177, 225
BmeT110I CYCGRG 1 cut(s) 769
BmgT120I GGNCC 3 cut(s) 177, 193, 225
BmrFI CCNGG 7 cut(s) 19, 81, 223, 229, 424, 770, 771
BmrI ACTGGG 1 cut(s) 825
BmuI ACTGGG 1 cut(s) 825
Bpu10I CCTNAGC 1 cut(s) 464
BpuMI CCSGG 5 cut(s) 223, 229, 424, 770, 771
BsaAI YACGTR 1 cut(s) 648
BsaHI GRCGYC 2 cut(s) 279, 348
BsaJI CCNNGG 9 cut(s) 80, 107, 264, 319, 432, 769, 770, 882, 896
BsaWI WCCGGW 3 cut(s) 32, 653, 808
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 228, 728, 815
Bse118I RCCGGY 5 cut(s) 170, 200, 242, 295, 326
Bse1I ACTGG 2 cut(s) 400, 820
Bse3DI GCAATG 1 cut(s) 852
BseBI CCWGG 2 cut(s) 19, 81
BseDI CCNNGG 9 cut(s) 80, 107, 264, 319, 432, 769, 770, 882, 896
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 4 cut(s) 190, 228, 728, 815
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 3 cut(s) 450, 455, 510
BseNI ACTGG 2 cut(s) 400, 820
BseRI GAGGAG 1 cut(s) 481
BseSI GKGCMC 2 cut(s) 455, 653
BseX3I CGGCCG 2 cut(s) 181, 563
BseXI GCAGC 2 cut(s) 191, 580
BseYI CCCAGC 1 cut(s) 758
BsgI GTGCAG 1 cut(s) 190
Bsh1236I CGCG 4 cut(s) 485, 497, 539, 620
Bsh1285I CGRYCG 3 cut(s) 171, 184, 566
BshFI GGCC 4 cut(s) 79, 183, 195, 565
BshNI GGYRCC 3 cut(s) 260, 278, 323
BsiEI CGRYCG 3 cut(s) 171, 184, 566
BsiHKAI GWGCWC 3 cut(s) 135, 431, 653
BsiHKCI CYCGRG 1 cut(s) 769
BsiWI CGTACG 1 cut(s) 621
BslFI GGGAC 3 cut(s) 406, 585, 894
BslI CCNNNNNNNGG 4 cut(s) 190, 228, 728, 815
BsmAI GTCTC 1 cut(s) 882
BsmFI GGGAC 3 cut(s) 406, 585, 894
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 4 cut(s) 79, 183, 195, 565
BsoBI CYCGRG 1 cut(s) 769
Bsp1286I GDGCHC 5 cut(s) 135, 431, 455, 518, 653
Bsp143I GATC 3 cut(s) 218, 436, 833
Bsp19I CCATGG 1 cut(s) 882
BspACI CCGC 6 cut(s) 252, 288, 293, 330, 399, 534
BspANI GGCC 4 cut(s) 79, 183, 195, 565
BspCNI CTCAG 3 cut(s) 451, 456, 511
BspFNI CGCG 4 cut(s) 485, 497, 539, 620
BspMAI CTGCAG 2 cut(s) 450, 799
BspMI ACCTGC 1 cut(s) 453
BspPI GGATC 4 cut(s) 213, 226, 444, 841
BspT107I GGYRCC 3 cut(s) 260, 278, 323
BsrDI GCAATG 1 cut(s) 852
BsrFI RCCGGY 5 cut(s) 170, 200, 242, 295, 326
BsrI ACTGG 2 cut(s) 400, 820
BssAI RCCGGY 5 cut(s) 170, 200, 242, 295, 326
BssECI CCNNGG 9 cut(s) 80, 107, 264, 319, 432, 769, 770, 882, 896
BssMI GATC 3 cut(s) 218, 436, 833
BssNI GRCGYC 2 cut(s) 279, 348
BssT1I CCWWGG 3 cut(s) 107, 882, 896
Bst2UI CCWGG 2 cut(s) 19, 81
Bst4CI ACNGT 5 cut(s) 73, 104, 119, 265, 670
BstACI GRCGYC 2 cut(s) 279, 348
BstBAI YACGTR 1 cut(s) 648
BstC8I GCNNGC 3 cut(s) 297, 332, 487
BstDEI CTNAG 3 cut(s) 459, 464, 519
BstDSI CCRYGG 3 cut(s) 264, 432, 882
BstF5I GGATG 1 cut(s) 481
BstFNI CGCG 4 cut(s) 485, 497, 539, 620
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 5 cut(s) 281, 416, 485, 497, 539
BstKTI GATC 3 cut(s) 221, 439, 836
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 3 cut(s) 218, 436, 833
BstMCI CGRYCG 3 cut(s) 171, 184, 566
BstNI CCWGG 2 cut(s) 19, 81
BstSCI CCNGG 7 cut(s) 17, 79, 221, 227, 422, 768, 769
BstSFI CTRYAG 3 cut(s) 446, 529, 795
BstSLI GKGCMC 2 cut(s) 455, 653
BstUI CGCG 4 cut(s) 485, 497, 539, 620
BstV1I GCAGC 2 cut(s) 191, 580
BstX2I RGATCY 3 cut(s) 218, 436, 833
BstYI RGATCY 3 cut(s) 218, 436, 833
BstZI CGGCCG 2 cut(s) 181, 563
BsuRI GGCC 4 cut(s) 79, 183, 195, 565
BtgI CCRYGG 3 cut(s) 264, 432, 882
BtsCI GGATG 1 cut(s) 481
BtsI GCAGTG 1 cut(s) 455
BtsIMutI CAGTG 2 cut(s) 416, 455
BveI ACCTGC 1 cut(s) 453
Cac8I GCNNGC 3 cut(s) 297, 332, 487
CfoI GCGC 5 cut(s) 281, 416, 485, 497, 539
Cfr10I RCCGGY 5 cut(s) 170, 200, 242, 295, 326
Cfr13I GGNCC 3 cut(s) 177, 193, 225
Cfr9I CCCGGG 1 cut(s) 769
CseI GACGC 1 cut(s) 638
Csp6I GTAC 6 cut(s) 120, 367, 523, 610, 622, 639
CviAII CATG 3 cut(s) 234, 864, 883
CviQI GTAC 6 cut(s) 120, 367, 523, 610, 622, 639
DdeI CTNAG 3 cut(s) 459, 464, 519
DinI GGCGCC 1 cut(s) 280
DpnI GATC 3 cut(s) 220, 438, 835
DpnII GATC 3 cut(s) 218, 436, 833
DraIII CACNNNGTG 1 cut(s) 426
DrdI GACNNNNNNGTC 4 cut(s) 175, 400, 799, 859
DseDI GACNNNNNNGTC 4 cut(s) 175, 400, 799, 859
EaeI YGGCCR 2 cut(s) 181, 563
EagI CGGCCG 2 cut(s) 181, 563
Ecl136II GAGCTC 1 cut(s) 133
EclXI CGGCCG 2 cut(s) 181, 563
Eco130I CCWWGG 3 cut(s) 107, 882, 896
Eco24I GRGCYC 2 cut(s) 135, 518
Eco47I GGWCC 2 cut(s) 177, 225
Eco52I CGGCCG 2 cut(s) 181, 563
Eco53kI GAGCTC 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 769
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 17, 79
EcoT14I CCWWGG 3 cut(s) 107, 882, 896
EcoT38I GRGCYC 2 cut(s) 135, 518
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
ErhI CCWWGG 3 cut(s) 107, 882, 896
FaeI CATG 3 cut(s) 237, 867, 886
FaiI YATR 6 cut(s) 235, 345, 543, 666, 865, 884
FaqI GGGAC 3 cut(s) 406, 585, 894
FatI CATG 3 cut(s) 233, 863, 882
FauI CCCGC 3 cut(s) 300, 323, 392
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 5 cut(s) 205, 253, 288, 535, 594
FokI GGATG 1 cut(s) 488
FriOI GRGCYC 2 cut(s) 135, 518
Fsp4HI GCNGC 5 cut(s) 205, 253, 288, 535, 594
FspBI CTAG 3 cut(s) 108, 305, 708
GlaI GCGC 5 cut(s) 280, 415, 484, 496, 538
GluI GCNGC 5 cut(s) 205, 253, 288, 535, 594
GsaI CCCAGC 1 cut(s) 762
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 4 cut(s) 79, 183, 195, 565
HgaI GACGC 1 cut(s) 638
HhaI GCGC 5 cut(s) 281, 416, 485, 497, 539
Hin1I GRCGYC 2 cut(s) 279, 348
Hin1II CATG 3 cut(s) 237, 867, 886
Hin6I GCGC 5 cut(s) 279, 414, 483, 495, 537
HinP1I GCGC 5 cut(s) 279, 414, 483, 495, 537
HincII GTYRAC 2 cut(s) 55, 361
HindII GTYRAC 2 cut(s) 55, 361
HinfI GANTC 4 cut(s) 85, 126, 713, 890
HphI GGTGA 6 cut(s) 37, 307, 540, 682, 851, 885
Hpy166II GTNNAC 7 cut(s) 55, 315, 361, 574, 645, 651, 777
Hpy188I TCNGA 3 cut(s) 441, 580, 699
Hpy188III TCNNGA 3 cut(s) 708, 822, 831
Hpy8I GTNNAC 7 cut(s) 55, 315, 361, 574, 645, 651, 777
Hpy99I CGWCG 6 cut(s) 218, 362, 365, 571, 629, 632
HpyAV CCTTC 3 cut(s) 58, 383, 693
HpyCH4III ACNGT 5 cut(s) 73, 104, 119, 265, 670
HpyCH4IV ACGT 4 cut(s) 348, 641, 647, 674
HpyCH4V TGCA 7 cut(s) 98, 207, 273, 448, 489, 651, 797
HpyF3I CTNAG 3 cut(s) 459, 464, 519
HpySE526I ACGT 4 cut(s) 348, 641, 647, 674
Hsp92I GRCGYC 2 cut(s) 279, 348
Hsp92II CATG 3 cut(s) 237, 867, 886
HspAI GCGC 5 cut(s) 279, 414, 483, 495, 537
KasI GGCGCC 1 cut(s) 278
KroI GCCGGC 1 cut(s) 295
KroNI GCCGGC 1 cut(s) 297
Kzo9I GATC 3 cut(s) 218, 436, 833
LmnI GCTCC 9 cut(s) 9, 138, 260, 284, 434, 468, 480, 513, 656
Lsp1109I GCAGC 2 cut(s) 191, 580
MaeI CTAG 3 cut(s) 108, 305, 708
MaeII ACGT 4 cut(s) 348, 641, 647, 674
MaeIII GTNAC 3 cut(s) 62, 670, 811
MalI GATC 3 cut(s) 220, 438, 835
MboI GATC 3 cut(s) 218, 436, 833
MboII GAAGA 1 cut(s) 696
MflI RGATCY 3 cut(s) 218, 436, 833
MhlI GDGCHC 5 cut(s) 135, 431, 455, 518, 653
MluI ACGCGT 1 cut(s) 618
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 1 cut(s) 884
MroNI GCCGGC 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 739
MseI TTAA 1 cut(s) 588
MspR9I CCNGG 7 cut(s) 19, 81, 223, 229, 424, 770, 771
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 2 cut(s) 19, 81
MvnI CGCG 4 cut(s) 485, 497, 539, 620
NaeI GCCGGC 1 cut(s) 297
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 5 cut(s) 223, 229, 424, 770, 771
NcoI CCATGG 1 cut(s) 882
NdeII GATC 3 cut(s) 218, 436, 833
NgoMIV GCCGGC 1 cut(s) 295
NlaIII CATG 3 cut(s) 237, 867, 886
NmeAIII GCCGAG 2 cut(s) 300, 334
NmuCI GTSAC 2 cut(s) 62, 670
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 624
PctI GAATGC 1 cut(s) 275
PdiI GCCGGC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 739
PfeI GAWTC 3 cut(s) 85, 126, 713
Pfl23II CGTACG 1 cut(s) 621
PkrI GCNGC 5 cut(s) 206, 254, 289, 536, 595
PleI GAGTC 1 cut(s) 884
PluTI GGCGCC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 884
Ppu21I YACGTR 1 cut(s) 648
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 2 cut(s) 17, 79
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 2 cut(s) 17, 79
PspLI CGTACG 1 cut(s) 621
PspPI GGNCC 3 cut(s) 177, 193, 225
PstI CTGCAG 2 cut(s) 450, 799
PsuI RGATCY 3 cut(s) 218, 436, 833
RsaI GTAC 6 cut(s) 121, 368, 524, 611, 623, 640
RsaNI GTAC 6 cut(s) 120, 367, 523, 610, 622, 639
SacI GAGCTC 1 cut(s) 135
SalI GTCGAC 1 cut(s) 359
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 5 cut(s) 205, 253, 288, 535, 594
Sau3AI GATC 3 cut(s) 218, 436, 833
Sau96I GGNCC 3 cut(s) 177, 193, 225
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 1 cut(s) 884
ScrFI CCNGG 7 cut(s) 19, 81, 223, 229, 424, 770, 771
SduI GDGCHC 5 cut(s) 135, 431, 455, 518, 653
SfcI CTRYAG 3 cut(s) 446, 529, 795
SfoI GGCGCC 1 cut(s) 280
SgrAI CRCCGGYG 1 cut(s) 326
SgrDI CGTCGACG 1 cut(s) 359
SinI GGWCC 2 cut(s) 177, 225
SmaI CCCGGG 1 cut(s) 771
SsiI CCGC 6 cut(s) 252, 288, 293, 330, 399, 534
SspDI GGCGCC 1 cut(s) 278
SspMI CTAG 3 cut(s) 108, 305, 708
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 7 cut(s) 17, 79, 221, 227, 422, 768, 769
StyI CCWWGG 3 cut(s) 107, 882, 896
TaaI ACNGT 5 cut(s) 73, 104, 119, 265, 670
TaiI ACGT 4 cut(s) 351, 644, 650, 677
TaqI TCGA 6 cut(s) 114, 129, 213, 360, 554, 791
TatI WGTACW 2 cut(s) 119, 522
TauI GCSGC 3 cut(s) 255, 290, 537
TfiI GAWTC 3 cut(s) 85, 126, 713
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 2 cut(s) 416, 455
TseFI GTSAC 2 cut(s) 62, 670
TseI GCWGC 2 cut(s) 204, 593
Tsp45I GTSAC 2 cut(s) 62, 670
TspDTI ATGAA 1 cut(s) 675
TspGWI ACGGA 2 cut(s) 231, 449
TspMI CCCGGG 1 cut(s) 769
TspRI CASTG 2 cut(s) 416, 455
VneI GTGCAC 1 cut(s) 649
VpaK11BI GGWCC 2 cut(s) 177, 225
XbaI TCTAGA 1 cut(s) 707
XmaI CCCGGG 1 cut(s) 769
XmaJI CCTAGG 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 739
XspI CTAG 3 cut(s) 108, 305, 708
ZraI GACGTC 1 cut(s) 349
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.