Rroxscaffold_2G00143240

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003319
Physical Location & Seq
Forward (+)
81263567 .. 81265328
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143240.1

Sequence Viewer

Length: 927 bp
ATGCTCGCGGGAACTCCATTTTCCTATTACCTCAGCCTCATTTTTCTAATCACCACCAAAGGAGTATCAGGAGCTACATTCACCTTCGTAAACAAATGTGACTTCACGGTATGGCCAGGAATTCTAGCCAGCGCCGGTAGTCCTAAGCTGGACAGCACCGGCTTTGAGCTCACCAAAGGCGACTCCCGCACCTTCCAAGCTCCAGCGGGCTGGTCAGGCCGCTTTTGGGCCCGAACCCGCTGCAGCTTCGACGCATCCGGCCTTGGCTCGTGTGCCACTGCCGATTGCGGCTCGGGGCTGGAGTGCAACGGAGCGGGAGCTGCTCCACCTGCAACCCTAGCCGAGTTCACGCTCGGCTCCGGCTCGGGTGGCACGCTGGATTTTTATGACGTCAGCCTGGTTGATGGTTATAACTTGCCTATGATCGTGGAGGGGAGTGGGGGATCAGGTACGTGCGCCACCACCGGGTGTGCGTCGGACCTCAACCGGAGTTGTCCGAATGAGCTCAAGGTCGTCGATGGCGACGCCTGTAAGAGCGCGTGCGACGCGTTTGGGACGCCGGAGTATTGTTGTAACGGCGCGTATGCTTCACCTGACACATGCAAGCCGTCCATGTACTCGCAGGTGTTTAAATCGGCTTGTCCCAAGTCGTATAGCTATGCTTATGATGATGCCTCGAGTACGTTTACATGTACCGGAGCGGACTATACAATCACATTTTGTGCTTCACTTCTTCCTAGTGTAAAGTCCGCAACAAATTCTTCTCCACAAATATCAGGTACCGGGTCAGGGTCGGAATCTGAAGGCGGCACGTCATTGCTAGCAAGTTTGGCAACCGGAGACTCAACTAAAACCCATTCTTCAATTGCTTTCCACAGTGTGTTGATTTTGGTTGTCTCCTTGGCTCTCTCATTTTTACGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

308

Amino Acids

31.54

Weight (kDa)

4.7

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 241 1.4e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AarI CACCTGC 2 cut(s) 337, 613
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 2 cut(s) 337, 613
Acc65I GGTACC 1 cut(s) 779
AccB1I GGYRCC 1 cut(s) 779
AccBSI CCGCTC 2 cut(s) 314, 701
AccII CGCG 4 cut(s) 8, 539, 548, 581
AclWI GGATC 1 cut(s) 451
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 2 cut(s) 120, 757
AcuI CTGAAG 1 cut(s) 822
AcyI GRCGYC 3 cut(s) 390, 525, 557
AdeI CACNNNGTG 2 cut(s) 468, 880
AfaI GTAC 5 cut(s) 451, 617, 682, 694, 781
AfiI CCNNNNNNNGG 3 cut(s) 226, 465, 789
AflIII ACRYGT 2 cut(s) 546, 689
AgsI TTSAA 1 cut(s) 864
AjiI CACGTC 1 cut(s) 813
AjnI CCWGG 2 cut(s) 115, 396
AluBI AGCT 8 cut(s) 74, 148, 169, 200, 246, 320, 505, 657
AluI AGCT 8 cut(s) 74, 148, 169, 200, 246, 320, 505, 657
Alw21I GWGCWC 2 cut(s) 171, 507
Alw26I GTCTC 2 cut(s) 834, 901
AlwI GGATC 1 cut(s) 451
Ama87I CYCGRG 3 cut(s) 292, 364, 676
AoxI GGCC 4 cut(s) 113, 217, 228, 259
ApaI GGGCCC 1 cut(s) 232
ApeKI GCWGC 3 cut(s) 240, 243, 320
ApoI RAATTY 2 cut(s) 120, 757
Asp718I GGTACC 1 cut(s) 779
AspLEI GCGC 4 cut(s) 134, 458, 539, 581
AspS9I GGNCC 3 cut(s) 228, 229, 478
AsuC2I CCSGG 2 cut(s) 466, 784
AsuHPI GGTGA 4 cut(s) 43, 73, 163, 582
AsuNHI GCTAGC 1 cut(s) 820
AvaI CYCGRG 3 cut(s) 292, 364, 676
AvaII GGWCC 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 115
BanI GGYRCC 1 cut(s) 779
BanII GRGCYC 3 cut(s) 171, 232, 507
BauI CACGAG 1 cut(s) 268
Bbv12I GWGCWC 2 cut(s) 171, 507
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 3 cut(s) 227, 255, 307
BccI CCATC 2 cut(s) 398, 512
BceAI ACGGC 2 cut(s) 592, 592
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 2 cut(s) 117, 398
BcnI CCSGG 2 cut(s) 466, 784
BcoDI GTCTC 2 cut(s) 834, 901
BfaI CTAG 4 cut(s) 125, 338, 738, 821
BfmI CTRYAG 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 2 cut(s) 337, 613
BisI GCNGC 6 cut(s) 220, 241, 244, 289, 321, 808
BlsI GCNGC 6 cut(s) 221, 242, 245, 290, 322, 809
Bme1390I CCNGG 4 cut(s) 117, 398, 466, 784
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 3 cut(s) 292, 364, 676
BmgBI CACGTC 1 cut(s) 813
BmgT120I GGNCC 3 cut(s) 228, 229, 478
BmiI GGNNCC 3 cut(s) 230, 358, 781
BmrFI CCNGG 4 cut(s) 117, 398, 466, 784
BmsI GCATC 2 cut(s) 263, 661
BmtI GCTAGC 1 cut(s) 824
BpmI CTGGAG 2 cut(s) 186, 320
Bpu10I CCTNAGC 2 cut(s) 32, 144
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 2 cut(s) 466, 784
BsaAI YACGTR 1 cut(s) 453
BsaHI GRCGYC 3 cut(s) 390, 525, 557
BsaJI CCNNGG 2 cut(s) 262, 900
BsaWI WCCGGW 3 cut(s) 486, 695, 836
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 465, 789
Bse118I RCCGGY 2 cut(s) 134, 158
Bse3DI GCAATG 1 cut(s) 815
BseBI CCWGG 2 cut(s) 117, 398
BseDI CCNNGG 2 cut(s) 262, 900
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 3 cut(s) 226, 465, 789
BseMI GCAATG 1 cut(s) 815
BseMII CTCAG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 3 cut(s) 227, 255, 307
Bsh1236I CGCG 4 cut(s) 8, 539, 548, 581
BshFI GGCC 4 cut(s) 115, 219, 230, 261
BshNI GGYRCC 1 cut(s) 779
BsiHKAI GWGCWC 2 cut(s) 171, 507
BsiHKCI CYCGRG 3 cut(s) 292, 364, 676
BslFI GGGAC 2 cut(s) 568, 627
BslI CCNNNNNNNGG 3 cut(s) 226, 465, 789
BsmAI GTCTC 2 cut(s) 834, 901
BsmFI GGGAC 2 cut(s) 568, 627
BsnI GGCC 4 cut(s) 115, 219, 230, 261
BsoBI CYCGRG 3 cut(s) 292, 364, 676
Bsp120I GGGCCC 1 cut(s) 228
Bsp1286I GDGCHC 3 cut(s) 171, 232, 507
Bsp143I GATC 2 cut(s) 423, 443
BspANI GGCC 4 cut(s) 115, 219, 230, 261
BspCNI CTCAG 1 cut(s) 45
BspFNI CGCG 4 cut(s) 8, 539, 548, 581
BspLI GGNNCC 3 cut(s) 230, 358, 781
BspMAI CTGCAG 1 cut(s) 245
BspMI ACCTGC 2 cut(s) 337, 613
BspOI GCTAGC 1 cut(s) 824
BspPI GGATC 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 779
BsrBI CCGCTC 2 cut(s) 314, 701
BsrDI GCAATG 1 cut(s) 815
BsrFI RCCGGY 2 cut(s) 134, 158
BssAI RCCGGY 2 cut(s) 134, 158
BssECI CCNNGG 2 cut(s) 262, 900
BssMI GATC 2 cut(s) 423, 443
BssNI GRCGYC 3 cut(s) 390, 525, 557
BssSI CACGAG 1 cut(s) 268
BssT1I CCWWGG 2 cut(s) 262, 900
Bst2BI CACGAG 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 117, 398
Bst4CI ACNGT 2 cut(s) 109, 878
BstACI GRCGYC 3 cut(s) 390, 525, 557
BstBAI YACGTR 1 cut(s) 453
BstC8I GCNNGC 7 cut(s) 6, 130, 208, 374, 541, 605, 822
BstDEI CTNAG 2 cut(s) 32, 144
BstF5I GGATG 1 cut(s) 254
BstFNI CGCG 4 cut(s) 8, 539, 548, 581
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 4 cut(s) 134, 458, 539, 581
BstKTI GATC 2 cut(s) 426, 446
BstMAI GTCTC 2 cut(s) 834, 901
BstMBI GATC 2 cut(s) 423, 443
BstMWI GCNNNNNNNGC 8 cut(s) 186, 216, 320, 329, 338, 369, 545, 830
BstNI CCWGG 2 cut(s) 117, 398
BstNSI RCATGY 2 cut(s) 603, 693
BstSCI CCNGG 4 cut(s) 115, 396, 464, 782
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 232
BstUI CGCG 4 cut(s) 8, 539, 548, 581
BstV1I GCAGC 3 cut(s) 227, 255, 307
BstXI CCANNNNNNTGG 1 cut(s) 210
BsuRI GGCC 4 cut(s) 115, 219, 230, 261
BtrI CACGTC 1 cut(s) 813
BtsCI GGATG 1 cut(s) 254
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 276, 883
BveI ACCTGC 2 cut(s) 337, 613
Cac8I GCNNGC 7 cut(s) 6, 130, 208, 374, 541, 605, 822
CfoI GCGC 4 cut(s) 134, 458, 539, 581
Cfr10I RCCGGY 2 cut(s) 134, 158
Cfr13I GGNCC 3 cut(s) 228, 229, 478
CseI GACGC 5 cut(s) 260, 462, 533, 554, 565
Csp6I GTAC 5 cut(s) 450, 616, 681, 693, 780
CviAII CATG 3 cut(s) 600, 613, 690
CviQI GTAC 5 cut(s) 450, 616, 681, 693, 780
DdeI CTNAG 2 cut(s) 32, 144
DpnI GATC 2 cut(s) 425, 445
DpnII GATC 2 cut(s) 423, 443
DraI TTTAAA 1 cut(s) 631
DraIII CACNNNGTG 2 cut(s) 468, 880
EaeI YGGCCR 1 cut(s) 113
Ecl136II GAGCTC 2 cut(s) 169, 505
Eco130I CCWWGG 2 cut(s) 262, 900
Eco24I GRGCYC 3 cut(s) 171, 232, 507
Eco47I GGWCC 1 cut(s) 478
Eco53kI GAGCTC 2 cut(s) 169, 505
Eco57I CTGAAG 1 cut(s) 822
Eco88I CYCGRG 3 cut(s) 292, 364, 676
EcoICRI GAGCTC 2 cut(s) 169, 505
EcoRI GAATTC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 115, 396
EcoT14I CCWWGG 2 cut(s) 262, 900
EcoT38I GRGCYC 3 cut(s) 171, 232, 507
ErhI CCWWGG 2 cut(s) 262, 900
FaeI CATG 3 cut(s) 603, 616, 693
FaqI GGGAC 2 cut(s) 568, 627
FatI CATG 3 cut(s) 599, 612, 689
FauI CCCGC 4 cut(s) 194, 199, 245, 307
Fnu4HI GCNGC 6 cut(s) 220, 241, 244, 289, 321, 808
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 3 cut(s) 171, 232, 507
Fsp4HI GCNGC 6 cut(s) 220, 241, 244, 289, 321, 808
FspBI CTAG 4 cut(s) 125, 338, 738, 821
GlaI GCGC 4 cut(s) 133, 457, 538, 580
GluI GCNGC 6 cut(s) 220, 241, 244, 289, 321, 808
GsuI CTGGAG 2 cut(s) 186, 320
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 4 cut(s) 115, 219, 230, 261
HgaI GACGC 5 cut(s) 260, 462, 533, 554, 565
HhaI GCGC 4 cut(s) 134, 458, 539, 581
Hin1I GRCGYC 3 cut(s) 390, 525, 557
Hin1II CATG 3 cut(s) 603, 616, 693
Hin6I GCGC 4 cut(s) 132, 456, 537, 579
HinP1I GCGC 4 cut(s) 132, 456, 537, 579
HinfI GANTC 3 cut(s) 182, 797, 842
HphI GGTGA 4 cut(s) 43, 73, 163, 582
Hpy166II GTNNAC 3 cut(s) 91, 348, 687
Hpy188I TCNGA 4 cut(s) 478, 498, 796, 802
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 3 cut(s) 91, 348, 687
Hpy99I CGWCG 5 cut(s) 254, 478, 518, 527, 548
HpyAV CCTTC 3 cut(s) 94, 202, 797
HpyCH4III ACNGT 2 cut(s) 109, 878
HpyCH4IV ACGT 4 cut(s) 390, 452, 683, 812
HpyCH4V TGCA 4 cut(s) 243, 306, 332, 603
HpyF10VI GCNNNNNNNGC 8 cut(s) 186, 216, 320, 329, 338, 369, 545, 830
HpyF3I CTNAG 2 cut(s) 32, 144
HpySE526I ACGT 4 cut(s) 390, 452, 683, 812
Hsp92I GRCGYC 3 cut(s) 390, 525, 557
Hsp92II CATG 3 cut(s) 603, 616, 693
HspAI GCGC 4 cut(s) 132, 456, 537, 579
KpnI GGTACC 1 cut(s) 783
Kzo9I GATC 2 cut(s) 423, 443
LmnI GCTCC 7 cut(s) 71, 205, 311, 317, 328, 362, 698
Lsp1109I GCAGC 3 cut(s) 227, 255, 307
LweI GCATC 2 cut(s) 263, 661
MaeI CTAG 4 cut(s) 125, 338, 738, 821
MaeII ACGT 4 cut(s) 390, 452, 683, 812
MaeIII GTNAC 2 cut(s) 98, 572
MalI GATC 2 cut(s) 425, 445
MbiI CCGCTC 2 cut(s) 314, 701
MboI GATC 2 cut(s) 423, 443
MboII GAAGA 3 cut(s) 725, 753, 852
MfeI CAATTG 1 cut(s) 864
MhlI GDGCHC 3 cut(s) 171, 232, 507
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 3 cut(s) 120, 757, 864
MluI ACGCGT 1 cut(s) 546
MluNI TGGCCA 1 cut(s) 115
MlyI GAGTC 2 cut(s) 176, 836
MmeI TCCRAC 2 cut(s) 456, 774
MnlI CCTC 5 cut(s) 41, 47, 424, 491, 685
Mox20I TGGCCA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 115
MseI TTAA 1 cut(s) 630
Msp20I TGGCCA 1 cut(s) 115
MspA1I CMGCKG 2 cut(s) 206, 240
MspR9I CCNGG 4 cut(s) 117, 398, 466, 784
MunI CAATTG 1 cut(s) 864
MvaI CCWGG 2 cut(s) 117, 398
MvnI CGCG 4 cut(s) 8, 539, 548, 581
MwoI GCNNNNNNNGC 8 cut(s) 186, 216, 320, 329, 338, 369, 545, 830
NciI CCSGG 2 cut(s) 466, 784
NdeII GATC 2 cut(s) 423, 443
NheI GCTAGC 1 cut(s) 820
NlaIII CATG 3 cut(s) 603, 616, 693
NlaIV GGNNCC 3 cut(s) 230, 358, 781
NmeAIII GCCGAG 2 cut(s) 333, 367
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 2 cut(s) 603, 693
PaeR7I CTCGAG 1 cut(s) 676
PaqCI CACCTGC 2 cut(s) 337, 613
PciI ACATGT 1 cut(s) 689
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PfeI GAWTC 1 cut(s) 797
PkrI GCNGC 6 cut(s) 221, 242, 245, 290, 322, 809
PleI GAGTC 2 cut(s) 176, 836
PpsI GAGTC 2 cut(s) 176, 836
Ppu21I YACGTR 1 cut(s) 453
PscI ACATGT 1 cut(s) 689
PsiI TTATAA 1 cut(s) 411
Psp124BI GAGCTC 2 cut(s) 171, 507
Psp6I CCWGG 2 cut(s) 115, 396
PspGI CCWGG 2 cut(s) 115, 396
PspN4I GGNNCC 3 cut(s) 230, 358, 781
PspOMI GGGCCC 1 cut(s) 228
PspPI GGNCC 3 cut(s) 228, 229, 478
PspXI VCTCGAGB 1 cut(s) 676
PstI CTGCAG 1 cut(s) 245
RsaI GTAC 5 cut(s) 451, 617, 682, 694, 781
RsaNI GTAC 5 cut(s) 450, 616, 681, 693, 780
SacI GAGCTC 2 cut(s) 171, 507
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 6 cut(s) 220, 241, 244, 289, 321, 808
Sau3AI GATC 2 cut(s) 423, 443
Sau96I GGNCC 3 cut(s) 228, 229, 478
SchI GAGTC 2 cut(s) 176, 836
ScrFI CCNGG 4 cut(s) 117, 398, 466, 784
SduI GDGCHC 3 cut(s) 171, 232, 507
SfaNI GCATC 2 cut(s) 263, 661
SfcI CTRYAG 1 cut(s) 241
Sfr274I CTCGAG 1 cut(s) 676
SinI GGWCC 1 cut(s) 478
SlaI CTCGAG 1 cut(s) 676
SmlI CTYRAG 2 cut(s) 506, 676
SmoI CTYRAG 2 cut(s) 506, 676
Sse9I AATT 3 cut(s) 120, 757, 864
SspMI CTAG 4 cut(s) 125, 338, 738, 821
SstI GAGCTC 2 cut(s) 171, 507
StyD4I CCNGG 4 cut(s) 115, 396, 464, 782
StyI CCWWGG 2 cut(s) 262, 900
TaaI ACNGT 2 cut(s) 109, 878
TaiI ACGT 4 cut(s) 393, 455, 686, 815
TaqI TCGA 3 cut(s) 249, 516, 677
TasI AATT 3 cut(s) 120, 757, 864
TatI WGTACW 1 cut(s) 615
TauI GCSGC 3 cut(s) 222, 291, 810
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 2 cut(s) 283, 883
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 3 cut(s) 240, 243, 320
Tsp45I GTSAC 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 2 cut(s) 283, 883
VpaK11BI GGWCC 1 cut(s) 478
XapI RAATTY 2 cut(s) 120, 757
XceI RCATGY 2 cut(s) 603, 693
XhoI CTCGAG 1 cut(s) 676
XspI CTAG 4 cut(s) 125, 338, 738, 821
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.