MD15G1244200.v1.1

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003319
Physical Location & Seq
Reverse (-)
20041655 .. 20043614
1960 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1244200.v1.1.491

Sequence Viewer

Length: 957 bp
ATGATTCCCCCAAATTTGACCAAAATCCTCATGGCAGCTCCATTTTCTTACCACATCACCTTCCTTCTTCTAATCATTACCAGAGGGGTGTCAGCAGCCACATTCACGTTCACAAATAAGTGCGACTTCACAGTATGGCCGGGAATTCTAGCTAGCTCCGGCAGCGAAAAGCTCGACAGCACCGGCTTCGAGCTCCCCAAAGGCAGCTCCCGCGTTTTCCAAGCCCCTACTGGCTGGTCCGGTCGGTTCTGGGGCCGAACCGGCTGCAGCTTCGACGGTTCCGGTCGCGGTTCGTGTTCAACCGGGGACTGCGGCTCGGGCGAGCTCGAGTGCAACGGAGCTGGAGCGGCCCCGCCAGCCACTCTAGCCGAGTTCACACTCGGTTCGGGTTCTCAAGACTTCTATGATGTCAGCCTTGTTGACGGTTATAACTTACCTATGATCGTTCAGGGGAGTGGGGGATCGGGTGCGTGCGCGTCCACCGGGTGTGTTACGGACCTTAACCGGAGGTGCCCTGCTGAGCTCAAAGCCGAAGGTGGCGGCGCGTGCAAGAGCGCGTGTGACGCGTTTGGAAGTCCGGAGTATTGTTGCAACGGCGCGTATGGTTCACCGTCTACATGCAAGCCGTCCATGTACTCACAATTGTTTAAGTCCGCATGTCCTAAGTCGTATAGCTACGCTTATGATGACGCTTCGAGTACGTTTACGTGTACGGGTGCTGATTATACAATCATATTTTGCGCTTCTCTCACTTCGAGTCTAAAATCTTCAAGAGATTCGTCTCCACAAACTGATGAATCAGGGTCGGGGTCAGGGTCAGATTCTGGGTCGAACTCAATAGGTTCTTCATTGCTAGCCAATTTGGCCACTGGAGATTCAACCAAAACCCAACCTTCCACTTCCATGGCTCTTCAAAGCATGCTGATTTTGGTCATCTCTTTGGCTCTCACATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

319

Amino Acids

32.67

Weight (kDa)

4.82

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 39 - 247 7e-85 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 510
AccBSI CCGCTC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 614
AccII CGCG 7 cut(s) 213, 288, 476, 545, 557, 566, 599
AccIII TCCGGA 1 cut(s) 577
AciI CCGC 7 cut(s) 211, 288, 312, 347, 353, 540, 654
AclWI GGATC 1 cut(s) 469
AcoI YGGCCR 2 cut(s) 137, 864
AcsI RAATTY 2 cut(s) 13, 144
AdeI CACNNNGTG 1 cut(s) 486
AfaI GTAC 3 cut(s) 635, 700, 712
AflIII ACRYGT 2 cut(s) 564, 707
AgsI TTSAA 4 cut(s) 300, 771, 879, 914
Alw21I GWGCWC 3 cut(s) 195, 327, 525
Alw26I GTCTC 1 cut(s) 786
AlwI GGATC 1 cut(s) 469
AlwNI CAGNNNCTG 1 cut(s) 824
Ama87I CYCGRG 2 cut(s) 316, 326
Aor13HI TCCGGA 1 cut(s) 577
AoxI GGCC 4 cut(s) 137, 253, 348, 864
ApeKI GCWGC 6 cut(s) 35, 95, 162, 204, 264, 267
ApoI RAATTY 2 cut(s) 13, 144
AspLEI GCGC 5 cut(s) 476, 545, 557, 599, 743
AspS9I GGNCC 4 cut(s) 237, 253, 349, 496
AsuC2I CCSGG 3 cut(s) 141, 304, 484
AsuHPI GGTGA 2 cut(s) 49, 600
AsuNHI GCTAGC 2 cut(s) 152, 853
AvaI CYCGRG 2 cut(s) 316, 326
AvaII GGWCC 2 cut(s) 237, 496
BaeGI GKGCMC 1 cut(s) 515
BalI TGGCCA 1 cut(s) 866
BanI GGYRCC 1 cut(s) 510
BanII GRGCYC 3 cut(s) 195, 327, 525
Bbv12I GWGCWC 3 cut(s) 195, 327, 525
BbvI GCAGC 6 cut(s) 47, 107, 174, 216, 251, 279
BceAI ACGGC 2 cut(s) 610, 610
BcgI CGANNNNNNTGC 4 cut(s) 169, 203, 246, 280
BcnI CCSGG 3 cut(s) 141, 304, 484
BcoDI GTCTC 1 cut(s) 786
BfaI CTAG 4 cut(s) 149, 153, 365, 854
BfmI CTRYAG 1 cut(s) 265
BglI GCCNNNNNGGC 2 cut(s) 261, 863
BisI GCNGC 9 cut(s) 36, 96, 163, 205, 265, 268, 313, 348, 541
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 9 cut(s) 37, 97, 164, 206, 266, 269, 314, 349, 542
Bme1390I CCNGG 3 cut(s) 141, 304, 484
Bme18I GGWCC 2 cut(s) 237, 496
BmeT110I CYCGRG 2 cut(s) 316, 326
BmgT120I GGNCC 4 cut(s) 237, 253, 349, 496
BmiI GGNNCC 4 cut(s) 254, 280, 351, 512
BmrFI CCNGG 3 cut(s) 141, 304, 484
BmtI GCTAGC 2 cut(s) 156, 857
BpmI CTGGAG 2 cut(s) 363, 891
Bpu1102I GCTNAGC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 378
BpuMI CCSGG 3 cut(s) 141, 304, 484
BsaAI YACGTR 1 cut(s) 708
BsaJI CCNNGG 2 cut(s) 303, 903
BsaWI WCCGGW 4 cut(s) 239, 281, 504, 577
Bse118I RCCGGY 2 cut(s) 182, 260
Bse1I ACTGG 2 cut(s) 235, 874
Bse3DI GCAATG 1 cut(s) 848
BseAI TCCGGA 1 cut(s) 577
BseDI CCNNGG 2 cut(s) 303, 903
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 2 cut(s) 235, 874
BseSI GKGCMC 1 cut(s) 515
BseXI GCAGC 6 cut(s) 47, 107, 174, 216, 251, 279
Bsh1236I CGCG 7 cut(s) 213, 288, 476, 545, 557, 566, 599
Bsh1285I CGRYCG 2 cut(s) 244, 286
BshFI GGCC 4 cut(s) 139, 255, 350, 866
BshNI GGYRCC 1 cut(s) 510
BsiEI CGRYCG 2 cut(s) 244, 286
BsiHKAI GWGCWC 3 cut(s) 195, 327, 525
BsiHKCI CYCGRG 2 cut(s) 316, 326
BslFI GGGAC 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 786
BsmBI CGTCTC 1 cut(s) 786
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 4 cut(s) 139, 255, 350, 866
BsoBI CYCGRG 2 cut(s) 316, 326
Bsp1286I GDGCHC 4 cut(s) 195, 327, 515, 525
Bsp13I TCCGGA 1 cut(s) 577
Bsp143I GATC 2 cut(s) 441, 461
Bsp1720I GCTNAGC 1 cut(s) 519
Bsp19I CCATGG 1 cut(s) 903
BspACI CCGC 7 cut(s) 211, 288, 312, 347, 353, 540, 654
BspANI GGCC 4 cut(s) 139, 255, 350, 866
BspCNI CTCAG 1 cut(s) 511
BspEI TCCGGA 1 cut(s) 577
BspFNI CGCG 7 cut(s) 213, 288, 476, 545, 557, 566, 599
BspLI GGNNCC 4 cut(s) 254, 280, 351, 512
BspMAI CTGCAG 1 cut(s) 269
BspOI GCTAGC 2 cut(s) 156, 857
BspPI GGATC 1 cut(s) 469
BspQI GCTCTTC 1 cut(s) 915
BspT107I GGYRCC 1 cut(s) 510
BsrBI CCGCTC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 848
BsrFI RCCGGY 2 cut(s) 182, 260
BsrI ACTGG 2 cut(s) 235, 874
BssAI RCCGGY 2 cut(s) 182, 260
BssECI CCNNGG 2 cut(s) 303, 903
BssMI GATC 2 cut(s) 441, 461
BssT1I CCWWGG 1 cut(s) 903
Bst4CI ACNGT 4 cut(s) 133, 278, 425, 612
Bst6I CTCTTC 1 cut(s) 915
BstBAI YACGTR 1 cut(s) 708
BstC8I GCNNGC 8 cut(s) 154, 323, 357, 472, 547, 623, 855, 920
BstDEI CTNAG 2 cut(s) 519, 663
BstDSI CCRYGG 1 cut(s) 903
BstFNI CGCG 7 cut(s) 213, 288, 476, 545, 557, 566, 599
BstHHI GCGC 5 cut(s) 476, 545, 557, 599, 743
BstKTI GATC 2 cut(s) 444, 464
BstMAI GTCTC 1 cut(s) 786
BstMBI GATC 2 cut(s) 441, 461
BstMCI CGRYCG 2 cut(s) 244, 286
BstNSI RCATGY 3 cut(s) 621, 660, 922
BstSCI CCNGG 3 cut(s) 139, 302, 482
BstSFI CTRYAG 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 515
BstUI CGCG 7 cut(s) 213, 288, 476, 545, 557, 566, 599
BstV1I GCAGC 6 cut(s) 47, 107, 174, 216, 251, 279
BstXI CCANNNNNNTGG 1 cut(s) 904
BsuRI GGCC 4 cut(s) 139, 255, 350, 866
BtgI CCRYGG 1 cut(s) 903
BtsIMutI CAGTG 1 cut(s) 867
Cac8I GCNNGC 8 cut(s) 154, 323, 357, 472, 547, 623, 855, 920
CaiI CAGNNNCTG 1 cut(s) 824
CfoI GCGC 5 cut(s) 476, 545, 557, 599, 743
Cfr10I RCCGGY 2 cut(s) 182, 260
Cfr13I GGNCC 4 cut(s) 237, 253, 349, 496
CseI GACGC 3 cut(s) 465, 572, 698
Csp6I GTAC 3 cut(s) 634, 699, 711
CviAII CATG 6 cut(s) 31, 618, 631, 657, 904, 919
CviQI GTAC 3 cut(s) 634, 699, 711
DdeI CTNAG 2 cut(s) 519, 663
DpnI GATC 2 cut(s) 443, 463
DpnII GATC 2 cut(s) 441, 461
DraIII CACNNNGTG 1 cut(s) 486
EaeI YGGCCR 2 cut(s) 137, 864
Eam1104I CTCTTC 1 cut(s) 915
EarI CTCTTC 1 cut(s) 915
Ecl136II GAGCTC 3 cut(s) 193, 325, 523
Eco130I CCWWGG 1 cut(s) 903
Eco24I GRGCYC 3 cut(s) 195, 327, 525
Eco47I GGWCC 2 cut(s) 237, 496
Eco53kI GAGCTC 3 cut(s) 193, 325, 523
Eco88I CYCGRG 2 cut(s) 316, 326
EcoICRI GAGCTC 3 cut(s) 193, 325, 523
EcoRI GAATTC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 903
EcoT38I GRGCYC 3 cut(s) 195, 327, 525
ErhI CCWWGG 1 cut(s) 903
Esp3I CGTCTC 1 cut(s) 786
FaeI CATG 6 cut(s) 34, 621, 634, 660, 907, 922
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 1 cut(s) 320
FatI CATG 6 cut(s) 30, 617, 630, 656, 903, 918
FauI CCCGC 2 cut(s) 218, 360
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 9 cut(s) 36, 96, 163, 205, 265, 268, 313, 348, 541
FriOI GRGCYC 3 cut(s) 195, 327, 525
Fsp4HI GCNGC 9 cut(s) 36, 96, 163, 205, 265, 268, 313, 348, 541
FspBI CTAG 4 cut(s) 149, 153, 365, 854
GlaI GCGC 5 cut(s) 475, 544, 556, 598, 742
GluI GCNGC 9 cut(s) 36, 96, 163, 205, 265, 268, 313, 348, 541
GsuI CTGGAG 2 cut(s) 363, 891
HaeIII GGCC 4 cut(s) 139, 255, 350, 866
HgaI GACGC 3 cut(s) 465, 572, 698
HhaI GCGC 5 cut(s) 476, 545, 557, 599, 743
Hin1II CATG 6 cut(s) 34, 621, 634, 660, 907, 922
Hin6I GCGC 5 cut(s) 474, 543, 555, 597, 741
HinP1I GCGC 5 cut(s) 474, 543, 555, 597, 741
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 6 cut(s) 4, 757, 776, 797, 821, 875
HphI GGTGA 2 cut(s) 49, 600
Hpy166II GTNNAC 8 cut(s) 111, 375, 421, 480, 608, 615, 705, 711
Hpy188I TCNGA 1 cut(s) 820
Hpy188III TCNNGA 3 cut(s) 395, 578, 771
Hpy8I GTNNAC 8 cut(s) 111, 375, 421, 480, 608, 615, 705, 711
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 4 cut(s) 70, 74, 527, 903
HpyCH4III ACNGT 4 cut(s) 133, 278, 425, 612
HpyCH4IV ACGT 3 cut(s) 107, 701, 707
HpyCH4V TGCA 5 cut(s) 267, 333, 549, 591, 621
HpyF3I CTNAG 2 cut(s) 519, 663
HpySE526I ACGT 3 cut(s) 107, 701, 707
Hsp92II CATG 6 cut(s) 34, 621, 634, 660, 907, 922
HspAI GCGC 5 cut(s) 474, 543, 555, 597, 741
Kpn2I TCCGGA 1 cut(s) 577
Kzo9I GATC 2 cut(s) 441, 461
LguI GCTCTTC 1 cut(s) 915
LmnI GCTCC 6 cut(s) 43, 161, 198, 212, 338, 344
Lsp1109I GCAGC 6 cut(s) 47, 107, 174, 216, 251, 279
MaeI CTAG 4 cut(s) 149, 153, 365, 854
MaeII ACGT 3 cut(s) 107, 701, 707
MaeIII GTNAC 2 cut(s) 490, 560
MalI GATC 2 cut(s) 443, 463
MbiI CCGCTC 1 cut(s) 347
MboI GATC 2 cut(s) 441, 461
MboII GAAGA 4 cut(s) 59, 759, 837, 902
MfeI CAATTG 1 cut(s) 641
MhlI GDGCHC 4 cut(s) 195, 327, 515, 525
MlsI TGGCCA 1 cut(s) 866
MluCI AATT 4 cut(s) 13, 144, 641, 859
MluI ACGCGT 1 cut(s) 564
MluNI TGGCCA 1 cut(s) 866
MlyI GAGTC 1 cut(s) 766
MnlI CCTC 3 cut(s) 38, 77, 501
Mox20I TGGCCA 1 cut(s) 866
MroI TCCGGA 1 cut(s) 577
MscI TGGCCA 1 cut(s) 866
MseI TTAA 2 cut(s) 501, 648
MslI CAYNNNNRTG 1 cut(s) 902
Msp20I TGGCCA 1 cut(s) 866
MspR9I CCNGG 3 cut(s) 141, 304, 484
MunI CAATTG 1 cut(s) 641
MvnI CGCG 7 cut(s) 213, 288, 476, 545, 557, 566, 599
NciI CCSGG 3 cut(s) 141, 304, 484
NcoI CCATGG 1 cut(s) 903
NdeII GATC 2 cut(s) 441, 461
NheI GCTAGC 2 cut(s) 152, 853
NlaIII CATG 6 cut(s) 34, 621, 634, 660, 907, 922
NlaIV GGNNCC 4 cut(s) 254, 280, 351, 512
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 560
NspI RCATGY 3 cut(s) 621, 660, 922
PaeI GCATGC 1 cut(s) 922
PaeR7I CTCGAG 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 915
PfeI GAWTC 5 cut(s) 4, 776, 797, 821, 875
PkrI GCNGC 9 cut(s) 37, 97, 164, 206, 266, 269, 314, 349, 542
PleI GAGTC 1 cut(s) 765
PpsI GAGTC 1 cut(s) 765
Ppu21I YACGTR 1 cut(s) 708
PsiI TTATAA 1 cut(s) 429
Psp124BI GAGCTC 3 cut(s) 195, 327, 525
PspN4I GGNNCC 4 cut(s) 254, 280, 351, 512
PspPI GGNCC 4 cut(s) 237, 253, 349, 496
PspXI VCTCGAGB 1 cut(s) 326
PstI CTGCAG 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 824
RsaI GTAC 3 cut(s) 635, 700, 712
RsaNI GTAC 3 cut(s) 634, 699, 711
RseI CAYNNNNRTG 1 cut(s) 902
SacI GAGCTC 3 cut(s) 195, 327, 525
SapI GCTCTTC 1 cut(s) 915
SaqAI TTAA 2 cut(s) 501, 648
SatI GCNGC 9 cut(s) 36, 96, 163, 205, 265, 268, 313, 348, 541
Sau3AI GATC 2 cut(s) 441, 461
Sau96I GGNCC 4 cut(s) 237, 253, 349, 496
SchI GAGTC 1 cut(s) 766
ScrFI CCNGG 3 cut(s) 141, 304, 484
SduI GDGCHC 4 cut(s) 195, 327, 515, 525
SfcI CTRYAG 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 2 cut(s) 237, 496
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 2 cut(s) 326, 393
SmoI CTYRAG 2 cut(s) 326, 393
SphI GCATGC 1 cut(s) 922
Sse9I AATT 4 cut(s) 13, 144, 641, 859
SsiI CCGC 7 cut(s) 211, 288, 312, 347, 353, 540, 654
SspMI CTAG 4 cut(s) 149, 153, 365, 854
SstI GAGCTC 3 cut(s) 195, 327, 525
StyD4I CCNGG 3 cut(s) 139, 302, 482
StyI CCWWGG 1 cut(s) 903
TaaI ACNGT 4 cut(s) 133, 278, 425, 612
TaiI ACGT 3 cut(s) 110, 704, 710
TaqI TCGA 7 cut(s) 174, 189, 273, 327, 695, 755, 830
TasI AATT 4 cut(s) 13, 144, 641, 859
TatI WGTACW 1 cut(s) 633
TauI GCSGC 3 cut(s) 315, 350, 543
TfiI GAWTC 5 cut(s) 4, 776, 797, 821, 875
Tru1I TTAA 2 cut(s) 501, 648
Tru9I TTAA 2 cut(s) 501, 648
TscAI CASTG 1 cut(s) 874
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 6 cut(s) 35, 95, 162, 204, 264, 267
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 2 cut(s) 810, 837
TspGWI ACGGA 2 cut(s) 351, 509
TspRI CASTG 1 cut(s) 874
VpaK11BI GGWCC 2 cut(s) 237, 496
XapI RAATTY 2 cut(s) 13, 144
XceI RCATGY 3 cut(s) 621, 660, 922
XcmI CCANNNNNNNNNTGG 2 cut(s) 28, 227
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 614
XspI CTAG 4 cut(s) 149, 153, 365, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.