FvH4_1g11710

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003319
Physical Location & Seq
Reverse (-)
6398777 .. 6400392
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11710.t1

Sequence Viewer

Length: 933 bp
ATGTTCATGGCAACTCCGTTTTCCTATTACCTCAGCCTTGTCTTTCTCATCATCACCAAAGGGGTATCAGGAGCTACATTCACCTTCGTAAACAAATGTGAGTTCACCGTTTGGCCAGGAATTCTAGCCAGCGCCGGTAGTCCCAACCTGGACAGCACCGGCTTTGAGCTTGCCAAGGGCGCCTCCCGCACCTTCCAAGCTCCAGCTGGTTGGTCGGGCCGTTTCTGGGCCCGAACCCGCTGCAGCTTTGATGCATCCGGCCTTGGCTCGTGTGCCACGGCCGATTGCGGCTCAGGCCAACTAGAGTGTAACGGAGCAGGAGCGGCCCCACCCGCAACCCTAGCCGAGTTCACGCTCGGCTCGGGGTCGGGTGGAACGCAGGACTTTTATGACGTTAGCCTGGTTGATGGTTATAACTTGCCAATGATCGTGGAAGGGAGTGGGGGATCAGGTACGTGCGCCACCACCGGATGTGCGACGGACCTCAACCGGAGTTGTCCGAATGAGCTCAAGGTGGAGGATGGCGACGCGTGTAAGAGCGCATGCGACGCTTTTGGGACGCCGGAGTATTGTTGTAACGGCGCGTATGGTTCACCTGACACATGCAAGCCGTCCATATACTCGCAGCTGTTTAAGTCGGCTTGTCCAAAGTCGTATAGCTACGCTTATGATGATGCCTCCAGTACGTTTACATGTACGGGAGCTGATTATACGATCACATTTTGTGCATCACTTCTTCCTAGTGTAAAATCCGCAACAAATGCTTCTCCGCAAGTACCTGATGTGTCCGGGACAAGTTCGGAACCGGAAGGCGGCACTTCACTGCTAGCAGGTTTGGCAACCGGAGACTCAACTAAAACCCGTTCTTCAATTGCTTTCCACACTATTTTGATTGTGGTCGTCTCCTTTGCTCTCTCATTTTTCCGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

311

Amino Acids

31.99

Weight (kDa)

4.58

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 242 1.3e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
Acc36I ACCTGC 1 cut(s) 821
AccB1I GGYRCC 1 cut(s) 179
AccBSI CCGCTC 1 cut(s) 323
AccII CGCG 2 cut(s) 530, 584
AciI CCGC 8 cut(s) 187, 238, 288, 323, 333, 753, 770, 813
AclWI GGATC 1 cut(s) 454
AcoI YGGCCR 2 cut(s) 113, 279
AcsI RAATTY 1 cut(s) 120
AcyI GRCGYC 2 cut(s) 180, 560
AfaI GTAC 4 cut(s) 454, 685, 697, 777
AfiI CCNNNNNNNGG 2 cut(s) 226, 812
AflIII ACRYGT 2 cut(s) 528, 692
AgsI TTSAA 1 cut(s) 870
AjnI CCWGG 3 cut(s) 115, 147, 399
AluBI AGCT 9 cut(s) 74, 169, 200, 206, 246, 508, 628, 660, 704
AluI AGCT 9 cut(s) 74, 169, 200, 206, 246, 508, 628, 660, 704
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 2 cut(s) 840, 907
AlwI GGATC 1 cut(s) 454
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 7 cut(s) 113, 217, 228, 259, 279, 295, 324
ApaI GGGCCC 1 cut(s) 232
ApeKI GCWGC 3 cut(s) 240, 243, 625
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 5 cut(s) 134, 182, 461, 542, 584
AspS9I GGNCC 5 cut(s) 217, 228, 229, 325, 481
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 4 cut(s) 46, 73, 97, 585
AsuNHI GCTAGC 1 cut(s) 826
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 115
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 2 cut(s) 232, 510
BauI CACGAG 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 510
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 3 cut(s) 227, 255, 637
BccI CCATC 2 cut(s) 401, 515
BceAI ACGGC 4 cut(s) 204, 294, 595, 595
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 3 cut(s) 117, 149, 401
BcnI CCSGG 1 cut(s) 790
BcoDI GTCTC 2 cut(s) 840, 907
BfaI CTAG 5 cut(s) 125, 302, 341, 741, 827
BfmI CTRYAG 1 cut(s) 241
BfoI RGCGCY 2 cut(s) 135, 183
BfuAI ACCTGC 1 cut(s) 821
BisI GCNGC 6 cut(s) 241, 244, 289, 324, 626, 814
BlsI GCNGC 6 cut(s) 242, 245, 290, 325, 627, 815
Bme1390I CCNGG 4 cut(s) 117, 149, 401, 790
Bme18I GGWCC 1 cut(s) 481
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 5 cut(s) 217, 228, 229, 325, 481
BmiI GGNNCC 4 cut(s) 181, 230, 327, 804
BmrFI CCNGG 4 cut(s) 117, 149, 401, 790
BmsI GCATC 4 cut(s) 241, 263, 664, 737
BmtI GCTAGC 1 cut(s) 830
BpmI CTGGAG 2 cut(s) 186, 664
Bpu10I CCTNAGC 2 cut(s) 32, 292
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 790
BsaAI YACGTR 1 cut(s) 456
BsaHI GRCGYC 2 cut(s) 180, 560
BsaJI CCNNGG 3 cut(s) 174, 262, 276
BsaWI WCCGGW 4 cut(s) 467, 489, 805, 842
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 812
Bse118I RCCGGY 2 cut(s) 134, 158
Bse1I ACTGG 1 cut(s) 681
BseBI CCWGG 3 cut(s) 117, 149, 401
BseDI CCNNGG 3 cut(s) 174, 262, 276
BseGI GGATG 3 cut(s) 254, 476, 526
BseLI CCNNNNNNNGG 2 cut(s) 226, 812
BseMII CTCAG 2 cut(s) 46, 306
BseNI ACTGG 1 cut(s) 681
BseSI GKGCMC 1 cut(s) 232
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 227, 255, 637
Bsh1236I CGCG 2 cut(s) 530, 584
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 7 cut(s) 115, 219, 230, 261, 281, 297, 326
BshNI GGYRCC 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 9 cut(s) 135, 159, 258, 468, 490, 563, 789, 806, 843
BslFI GGGAC 3 cut(s) 126, 571, 805
BslI CCNNNNNNNGG 2 cut(s) 226, 812
BsmAI GTCTC 2 cut(s) 840, 907
BsmBI CGTCTC 1 cut(s) 907
BsmFI GGGAC 3 cut(s) 126, 571, 805
BsnI GGCC 7 cut(s) 115, 219, 230, 261, 281, 297, 326
BsoBI CYCGRG 1 cut(s) 361
Bsp120I GGGCCC 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 232, 510
Bsp143I GATC 3 cut(s) 426, 446, 714
BspACI CCGC 8 cut(s) 187, 238, 288, 323, 333, 753, 770, 813
BspANI GGCC 7 cut(s) 115, 219, 230, 261, 281, 297, 326
BspCNI CTCAG 2 cut(s) 45, 305
BspFNI CGCG 2 cut(s) 530, 584
BspLI GGNNCC 4 cut(s) 181, 230, 327, 804
BspMAI CTGCAG 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 821
BspOI GCTAGC 1 cut(s) 830
BspPI GGATC 1 cut(s) 454
BspT107I GGYRCC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 323
BsrFI RCCGGY 2 cut(s) 134, 158
BsrI ACTGG 1 cut(s) 681
BssAI RCCGGY 2 cut(s) 134, 158
BssECI CCNNGG 3 cut(s) 174, 262, 276
BssMI GATC 3 cut(s) 426, 446, 714
BssNI GRCGYC 2 cut(s) 180, 560
BssSI CACGAG 1 cut(s) 268
BssT1I CCWWGG 2 cut(s) 174, 262
Bst2BI CACGAG 1 cut(s) 268
Bst2UI CCWGG 3 cut(s) 117, 149, 401
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 2 cut(s) 180, 560
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBAI YACGTR 1 cut(s) 456
BstC8I GCNNGC 5 cut(s) 130, 171, 544, 608, 828
BstDEI CTNAG 2 cut(s) 32, 292
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 3 cut(s) 254, 476, 526
BstFNI CGCG 2 cut(s) 530, 584
BstH2I RGCGCY 2 cut(s) 135, 183
BstHHI GCGC 5 cut(s) 134, 182, 461, 542, 584
BstKTI GATC 3 cut(s) 429, 449, 717
BstMAI GTCTC 2 cut(s) 840, 907
BstMBI GATC 3 cut(s) 426, 446, 714
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 9 cut(s) 179, 186, 294, 323, 332, 341, 548, 761, 836
BstNI CCWGG 3 cut(s) 117, 149, 401
BstNSI RCATGY 3 cut(s) 546, 606, 696
BstSCI CCNGG 4 cut(s) 115, 147, 399, 788
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 232
BstUI CGCG 2 cut(s) 530, 584
BstV1I GCAGC 3 cut(s) 227, 255, 637
BstXI CCANNNNNNTGG 1 cut(s) 210
BstZI CGGCCG 1 cut(s) 279
BsuRI GGCC 7 cut(s) 115, 219, 230, 261, 281, 297, 326
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 3 cut(s) 254, 476, 526
BtsI GCAGTG 1 cut(s) 821
BtsIMutI CAGTG 1 cut(s) 821
BveI ACCTGC 1 cut(s) 821
Cac8I GCNNGC 5 cut(s) 130, 171, 544, 608, 828
CfoI GCGC 5 cut(s) 134, 182, 461, 542, 584
Cfr10I RCCGGY 2 cut(s) 134, 158
Cfr13I GGNCC 5 cut(s) 217, 228, 229, 325, 481
CseI GACGC 3 cut(s) 536, 557, 568
Csp6I GTAC 4 cut(s) 453, 684, 696, 776
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 4 cut(s) 7, 543, 603, 693
CviQI GTAC 4 cut(s) 453, 684, 696, 776
DdeI CTNAG 2 cut(s) 32, 292
DinI GGCGCC 1 cut(s) 181
DpnI GATC 3 cut(s) 428, 448, 716
DpnII GATC 3 cut(s) 426, 446, 714
EaeI YGGCCR 2 cut(s) 113, 279
EagI CGGCCG 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 508
EclXI CGGCCG 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 174, 262
Eco24I GRGCYC 2 cut(s) 232, 510
Eco47I GGWCC 1 cut(s) 481
Eco52I CGGCCG 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 508
Eco88I CYCGRG 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 120
EcoRII CCWGG 3 cut(s) 115, 147, 399
EcoT14I CCWWGG 2 cut(s) 174, 262
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 2 cut(s) 232, 510
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 2 cut(s) 174, 262
Esp3I CGTCTC 1 cut(s) 907
FaeI CATG 4 cut(s) 10, 546, 606, 696
FaqI GGGAC 3 cut(s) 126, 571, 805
FatI CATG 4 cut(s) 6, 542, 602, 692
FauI CCCGC 3 cut(s) 194, 245, 340
Fnu4HI GCNGC 6 cut(s) 241, 244, 289, 324, 626, 814
FokI GGATG 3 cut(s) 241, 483, 533
FriOI GRGCYC 2 cut(s) 232, 510
Fsp4HI GCNGC 6 cut(s) 241, 244, 289, 324, 626, 814
FspBI CTAG 5 cut(s) 125, 302, 341, 741, 827
GlaI GCGC 5 cut(s) 133, 181, 460, 541, 583
GluI GCNGC 6 cut(s) 241, 244, 289, 324, 626, 814
GsuI CTGGAG 2 cut(s) 186, 664
HaeII RGCGCY 2 cut(s) 135, 183
HaeIII GGCC 7 cut(s) 115, 219, 230, 261, 281, 297, 326
HapII CCGG 9 cut(s) 135, 159, 258, 468, 490, 563, 789, 806, 843
HgaI GACGC 3 cut(s) 536, 557, 568
HhaI GCGC 5 cut(s) 134, 182, 461, 542, 584
Hin1I GRCGYC 2 cut(s) 180, 560
Hin1II CATG 4 cut(s) 10, 546, 606, 696
Hin6I GCGC 5 cut(s) 132, 180, 459, 540, 582
HinP1I GCGC 5 cut(s) 132, 180, 459, 540, 582
HinfI GANTC 1 cut(s) 848
HpaII CCGG 9 cut(s) 135, 159, 258, 468, 490, 563, 789, 806, 843
HphI GGTGA 4 cut(s) 46, 73, 97, 585
Hpy166II GTNNAC 5 cut(s) 91, 105, 351, 593, 690
Hpy188I TCNGA 3 cut(s) 501, 802, 926
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 5 cut(s) 91, 105, 351, 593, 690
Hpy99I CGWCG 3 cut(s) 481, 530, 551
HpyAV CCTTC 4 cut(s) 94, 202, 428, 803
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 3 cut(s) 393, 455, 686
HpyCH4V TGCA 4 cut(s) 243, 254, 606, 728
HpyF10VI GCNNNNNNNGC 9 cut(s) 179, 186, 294, 323, 332, 341, 548, 761, 836
HpyF3I CTNAG 2 cut(s) 32, 292
HpySE526I ACGT 3 cut(s) 393, 455, 686
Hsp92I GRCGYC 2 cut(s) 180, 560
Hsp92II CATG 4 cut(s) 10, 546, 606, 696
HspAI GCGC 5 cut(s) 132, 180, 459, 540, 582
KasI GGCGCC 1 cut(s) 179
Kzo9I GATC 3 cut(s) 426, 446, 714
LmnI GCTCC 5 cut(s) 71, 205, 314, 320, 701
Lsp1109I GCAGC 3 cut(s) 227, 255, 637
LweI GCATC 4 cut(s) 241, 263, 664, 737
MaeI CTAG 5 cut(s) 125, 302, 341, 741, 827
MaeII ACGT 3 cut(s) 393, 455, 686
MaeIII GTNAC 2 cut(s) 308, 575
MalI GATC 3 cut(s) 428, 448, 716
MbiI CCGCTC 1 cut(s) 323
MboI GATC 3 cut(s) 426, 446, 714
MboII GAAGA 2 cut(s) 728, 858
MfeI CAATTG 1 cut(s) 870
MhlI GDGCHC 2 cut(s) 232, 510
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 2 cut(s) 120, 870
MluI ACGCGT 1 cut(s) 528
MluNI TGGCCA 1 cut(s) 115
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 1 cut(s) 842
MnlI CCTC 5 cut(s) 41, 193, 494, 511, 688
Mox20I TGGCCA 1 cut(s) 115
Mph1103I ATGCAT 1 cut(s) 256
MscI TGGCCA 1 cut(s) 115
MseI TTAA 1 cut(s) 633
Msp20I TGGCCA 1 cut(s) 115
MspA1I CMGCKG 3 cut(s) 206, 240, 628
MspI CCGG 9 cut(s) 135, 159, 258, 468, 490, 563, 789, 806, 843
MspR9I CCNGG 4 cut(s) 117, 149, 401, 790
MunI CAATTG 1 cut(s) 870
MvaI CCWGG 3 cut(s) 117, 149, 401
MvnI CGCG 2 cut(s) 530, 584
MwoI GCNNNNNNNGC 9 cut(s) 179, 186, 294, 323, 332, 341, 548, 761, 836
NarI GGCGCC 1 cut(s) 180
NciI CCSGG 1 cut(s) 790
NdeII GATC 3 cut(s) 426, 446, 714
NheI GCTAGC 1 cut(s) 826
NlaIII CATG 4 cut(s) 10, 546, 606, 696
NlaIV GGNNCC 4 cut(s) 181, 230, 327, 804
NmeAIII GCCGAG 2 cut(s) 336, 370
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 3 cut(s) 546, 606, 696
PaeI GCATGC 1 cut(s) 546
PciI ACATGT 1 cut(s) 692
PfoI TCCNGGA 1 cut(s) 788
PkrI GCNGC 6 cut(s) 242, 245, 290, 325, 627, 815
PleI GAGTC 1 cut(s) 842
PluTI GGCGCC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 842
Ppu21I YACGTR 1 cut(s) 456
PscI ACATGT 1 cut(s) 692
PsiI TTATAA 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 510
Psp6I CCWGG 3 cut(s) 115, 147, 399
PspGI CCWGG 3 cut(s) 115, 147, 399
PspN4I GGNNCC 4 cut(s) 181, 230, 327, 804
PspOMI GGGCCC 1 cut(s) 228
PspPI GGNCC 5 cut(s) 217, 228, 229, 325, 481
PstI CTGCAG 1 cut(s) 245
PvuII CAGCTG 2 cut(s) 206, 628
RsaI GTAC 4 cut(s) 454, 685, 697, 777
RsaNI GTAC 4 cut(s) 453, 684, 696, 776
SacI GAGCTC 1 cut(s) 510
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 6 cut(s) 241, 244, 289, 324, 626, 814
Sau3AI GATC 3 cut(s) 426, 446, 714
Sau96I GGNCC 5 cut(s) 217, 228, 229, 325, 481
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 4 cut(s) 117, 149, 401, 790
SduI GDGCHC 2 cut(s) 232, 510
SfaNI GCATC 4 cut(s) 241, 263, 664, 737
SfcI CTRYAG 1 cut(s) 241
SfoI GGCGCC 1 cut(s) 181
SinI GGWCC 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
SphI GCATGC 1 cut(s) 546
Sse9I AATT 2 cut(s) 120, 870
SsiI CCGC 8 cut(s) 187, 238, 288, 323, 333, 753, 770, 813
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 5 cut(s) 125, 302, 341, 741, 827
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 4 cut(s) 115, 147, 399, 788
StyI CCWWGG 2 cut(s) 174, 262
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 3 cut(s) 396, 458, 689
TasI AATT 2 cut(s) 120, 870
TauI GCSGC 3 cut(s) 291, 326, 816
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 1 cut(s) 828
TseI GCWGC 3 cut(s) 240, 243, 625
TspGWI ACGGA 3 cut(s) 6, 327, 494
TspRI CASTG 1 cut(s) 828
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 1 cut(s) 120
XceI RCATGY 3 cut(s) 546, 606, 696
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XspI CTAG 5 cut(s) 125, 302, 341, 741, 827
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.