Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002025.1

Orthogroup ID

OG0003319

Physical Location & Seq

Genomic Coordinates Forward (+)

7506 .. 8632

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002025.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgctcatgcgaactccattttcctattacctcagcctcatttttctcatcatcaccaaaggggtatcaggagctacattcaccttcgtaaacaaatgtgacttcacggtatggccaggaattctagccagcgccggtagtcctaagctggacagcaccggctttgagctcaccaaaggcggctcccgcaccttccaagctccaactggctggtcgggccgcttctgggcccgaacccgctgcaacttcgacgcatccggccttggctcctgtgccacggccgattgcggttcgggactggagtgcaacggagcgggagccgctccacctgccaccctagccgagttcacgctcggctccggctcgggtggcacgctggatttttatgacgtcagcctggttgatggttataacttgcctatgatcgtggaggggagtgggggatcaggtacgtgcgccaccaccgggtgtgcgtcggacctcaaccggagttgtccgaatgagctcaaggtcgtcgacggcgacgcctgtaagagcgcttgcggcgcgtttgggacgccggagtattgttgtaacggcgcgtatgcttcacctgacacatgcaagccgtccgtgtactcgcaggtgtttaagtcggcttgtcccaagtcgtatagctacgcgtatgatgatgcctcgagtacgtttacatgtaccggggcggattatacaatcacattttgtgcttcacttcttcctagtgtaaagtccgcaacaaattcttctccacaaatatcaggtgccgggtcagggtcggaatcggaaggcggcacgtcattgctagcaagtttggcaaccggagactcaactaaaacccattcttcaattgctttccacagtgtgttgattttggttgtctccttgtctctctcatttttacgattgcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

309

Amino Acids

31.74

Weight (kDa)

5.02

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38660 AT4G38660
fragaria_vesca	FvH4_1g11710 FvH4_2g01540
malus_domestica	MD02G1130200.v1.1 MD05G1118900.v1.1 MD10G1121900.v1.1 MD15G1244200.v1.1
prunus_persica	Prupe.7G169500_v2.0.a1 Prupe.8G163300_v2.0.a1
pyrus_communis	pycom02g10200 pycom02g10220 pycom05g11300 pycom10g10510 pycom15g21500
rosa_chinensis	RchiOBHm_Chr2g0099291 RchiOBHm_Chr6g0244181
rosa_laevigata	RLG00000015376 RLG00000016869
rosa_multiflora	Rmu_co8436735.1_g000001 Rmu_sc0000638.1_g000016 Rmu_sc0001455.1_g000006 Rmu_sc0002025.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143240 Rroxscaffold_7G00215960
rosa_rugosa	Rorug02G0078500 Rorug05G0507800
rosa_samantha	Rh2AG127800 Rh2BG130800 Rh2CG132000 Rh2DG132500 Rh6BG018100 Rh6CG014900 Rh6DG016000
rosa_wichuraiana	Rw2G009870 Rw6G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AarI	CACCTGC	2 cut(s)	337, 613
AatII	GACGTC	1 cut(s)	393
Acc36I	ACCTGC	2 cut(s)	337, 613
AccB1I	GGYRCC	1 cut(s)	779
AccBSI	CCGCTC	2 cut(s)	314, 323
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	3 cut(s)	548, 581, 662
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	2 cut(s)	113, 279
AcsI	RAATTY	2 cut(s)	120, 757
AcyI	GRCGYC	3 cut(s)	390, 525, 557
AdeI	CACNNNGTG	2 cut(s)	468, 880
AfaI	GTAC	4 cut(s)	451, 617, 682, 694
AfeI	AGCGCT	1 cut(s)	538
AfiI	CCNNNNNNNGG	3 cut(s)	226, 465, 789
AflIII	ACRYGT	2 cut(s)	660, 689
AgsI	TTSAA	1 cut(s)	864
AjiI	CACGTC	1 cut(s)	813
AjnI	CCWGG	2 cut(s)	115, 396
AluBI	AGCT	6 cut(s)	74, 148, 169, 200, 505, 657
AluI	AGCT	6 cut(s)	74, 148, 169, 200, 505, 657
Alw21I	GWGCWC	2 cut(s)	171, 507
Alw26I	GTCTC	3 cut(s)	834, 901, 909
AlwI	GGATC	1 cut(s)	451
Ama87I	CYCGRG	2 cut(s)	364, 676
Aor51HI	AGCGCT	1 cut(s)	538
AoxI	GGCC	5 cut(s)	113, 217, 228, 259, 279
ApaI	GGGCCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	2 cut(s)	120, 757
AspLEI	GCGC	5 cut(s)	134, 458, 539, 548, 581
AspS9I	GGNCC	4 cut(s)	217, 228, 229, 478
AsuC2I	CCSGG	3 cut(s)	466, 697, 784
AsuHPI	GGTGA	4 cut(s)	46, 73, 163, 582
AsuNHI	GCTAGC	1 cut(s)	820
AvaI	CYCGRG	2 cut(s)	364, 676
AvaII	GGWCC	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	779
BanII	GRGCYC	3 cut(s)	171, 232, 507
Bbv12I	GWGCWC	2 cut(s)	171, 507
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	4 cut(s)	294, 535, 592, 592
BcgI	CGANNNNNNTGC	2 cut(s)	222, 256
BciT130I	CCWGG	2 cut(s)	117, 398
BcnI	CCSGG	3 cut(s)	466, 697, 784
BcoDI	GTCTC	3 cut(s)	834, 901, 909
BfaI	CTAG	4 cut(s)	125, 338, 738, 821
BfoI	RGCGCY	2 cut(s)	135, 540
BfuAI	ACCTGC	2 cut(s)	337, 613
BisI	GCNGC	6 cut(s)	181, 220, 241, 321, 544, 808
BlsI	GCNGC	6 cut(s)	182, 221, 242, 322, 545, 809
Bme1390I	CCNGG	5 cut(s)	117, 398, 466, 697, 784
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	2 cut(s)	364, 676
BmgBI	CACGTC	1 cut(s)	813
BmgT120I	GGNCC	4 cut(s)	217, 228, 229, 478
BmiI	GGNNCC	6 cut(s)	184, 230, 268, 319, 358, 781
BmrFI	CCNGG	5 cut(s)	117, 398, 466, 697, 784
BmsI	GCATC	2 cut(s)	263, 661
BmtI	GCTAGC	1 cut(s)	824
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	2 cut(s)	32, 144
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	3 cut(s)	466, 697, 784
BsaAI	YACGTR	1 cut(s)	453
BsaHI	GRCGYC	3 cut(s)	390, 525, 557
BsaJI	CCNNGG	3 cut(s)	262, 276, 696
BsaWI	WCCGGW	2 cut(s)	486, 836
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 465, 789
Bse118I	RCCGGY	2 cut(s)	134, 158
Bse1I	ACTGG	2 cut(s)	211, 303
Bse3DI	GCAATG	1 cut(s)	815
BseBI	CCWGG	2 cut(s)	117, 398
BseDI	CCNNGG	3 cut(s)	262, 276, 696
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	3 cut(s)	226, 465, 789
BseMI	GCAATG	1 cut(s)	815
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	2 cut(s)	211, 303
BseSI	GKGCMC	1 cut(s)	232
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	227
Bsh1236I	CGCG	3 cut(s)	548, 581, 662
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	5 cut(s)	115, 219, 230, 261, 281
BshNI	GGYRCC	1 cut(s)	779
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	2 cut(s)	171, 507
BsiHKCI	CYCGRG	2 cut(s)	364, 676
BslFI	GGGAC	3 cut(s)	309, 568, 627
BslI	CCNNNNNNNGG	3 cut(s)	226, 465, 789
BsmAI	GTCTC	3 cut(s)	834, 901, 909
BsmFI	GGGAC	3 cut(s)	309, 568, 627
BsnI	GGCC	5 cut(s)	115, 219, 230, 261, 281
BsoBI	CYCGRG	2 cut(s)	364, 676
Bsp120I	GGGCCC	1 cut(s)	228
Bsp1286I	GDGCHC	3 cut(s)	171, 232, 507
Bsp143I	GATC	2 cut(s)	423, 443
BspANI	GGCC	5 cut(s)	115, 219, 230, 261, 281
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	3 cut(s)	548, 581, 662
BspLI	GGNNCC	6 cut(s)	184, 230, 268, 319, 358, 781
BspMI	ACCTGC	2 cut(s)	337, 613
BspOI	GCTAGC	1 cut(s)	824
BspPI	GGATC	1 cut(s)	451
BspT107I	GGYRCC	1 cut(s)	779
BsrBI	CCGCTC	2 cut(s)	314, 323
BsrDI	GCAATG	1 cut(s)	815
BsrFI	RCCGGY	2 cut(s)	134, 158
BsrI	ACTGG	2 cut(s)	211, 303
BssAI	RCCGGY	2 cut(s)	134, 158
BssECI	CCNNGG	3 cut(s)	262, 276, 696
BssMI	GATC	2 cut(s)	423, 443
BssNI	GRCGYC	3 cut(s)	390, 525, 557
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	2 cut(s)	117, 398
Bst4CI	ACNGT	2 cut(s)	109, 878
BstACI	GRCGYC	3 cut(s)	390, 525, 557
BstBAI	YACGTR	1 cut(s)	453
BstC8I	GCNNGC	5 cut(s)	130, 374, 541, 605, 822
BstDEI	CTNAG	2 cut(s)	32, 144
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	254
BstFNI	CGCG	3 cut(s)	548, 581, 662
BstH2I	RGCGCY	2 cut(s)	135, 540
BstHHI	GCGC	5 cut(s)	134, 458, 539, 548, 581
BstKTI	GATC	2 cut(s)	426, 446
BstMAI	GTCTC	3 cut(s)	834, 901, 909
BstMBI	GATC	2 cut(s)	423, 443
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	9 cut(s)	186, 216, 320, 329, 338, 369, 543, 545, 830
BstNI	CCWGG	2 cut(s)	117, 398
BstNSI	RCATGY	2 cut(s)	603, 693
BstSCI	CCNGG	5 cut(s)	115, 396, 464, 695, 782
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	3 cut(s)	548, 581, 662
BstV1I	GCAGC	1 cut(s)	227
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	5 cut(s)	115, 219, 230, 261, 281
BtgI	CCRYGG	1 cut(s)	276
BtrI	CACGTC	1 cut(s)	813
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	883
BveI	ACCTGC	2 cut(s)	337, 613
Cac8I	GCNNGC	5 cut(s)	130, 374, 541, 605, 822
CfoI	GCGC	5 cut(s)	134, 458, 539, 548, 581
Cfr10I	RCCGGY	2 cut(s)	134, 158
Cfr13I	GGNCC	4 cut(s)	217, 228, 229, 478
CseI	GACGC	4 cut(s)	260, 462, 533, 565
Csp6I	GTAC	4 cut(s)	450, 616, 681, 693
CviAII	CATG	3 cut(s)	7, 600, 690
CviQI	GTAC	4 cut(s)	450, 616, 681, 693
DdeI	CTNAG	2 cut(s)	32, 144
DpnI	GATC	2 cut(s)	425, 445
DpnII	GATC	2 cut(s)	423, 443
DraIII	CACNNNGTG	2 cut(s)	468, 880
EaeI	YGGCCR	2 cut(s)	113, 279
EagI	CGGCCG	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	716
Ecl136II	GAGCTC	2 cut(s)	169, 505
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	3 cut(s)	171, 232, 507
Eco47I	GGWCC	1 cut(s)	478
Eco47III	AGCGCT	1 cut(s)	538
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	2 cut(s)	169, 505
Eco88I	CYCGRG	2 cut(s)	364, 676
EcoICRI	GAGCTC	2 cut(s)	169, 505
EcoRI	GAATTC	1 cut(s)	120
EcoRII	CCWGG	2 cut(s)	115, 396
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	3 cut(s)	171, 232, 507
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	3 cut(s)	10, 603, 693
FaqI	GGGAC	3 cut(s)	309, 568, 627
FatI	CATG	3 cut(s)	6, 599, 689
FauI	CCCGC	3 cut(s)	194, 245, 307
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	6 cut(s)	181, 220, 241, 321, 544, 808
FokI	GGATG	1 cut(s)	241
FriOI	GRGCYC	3 cut(s)	171, 232, 507
Fsp4HI	GCNGC	6 cut(s)	181, 220, 241, 321, 544, 808
FspBI	CTAG	4 cut(s)	125, 338, 738, 821
GlaI	GCGC	5 cut(s)	133, 457, 538, 547, 580
GluI	GCNGC	6 cut(s)	181, 220, 241, 321, 544, 808
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	2 cut(s)	135, 540
HaeIII	GGCC	5 cut(s)	115, 219, 230, 261, 281
HgaI	GACGC	4 cut(s)	260, 462, 533, 565
HhaI	GCGC	5 cut(s)	134, 458, 539, 548, 581
Hin1I	GRCGYC	3 cut(s)	390, 525, 557
Hin1II	CATG	3 cut(s)	10, 603, 693
Hin6I	GCGC	5 cut(s)	132, 456, 537, 546, 579
HinP1I	GCGC	5 cut(s)	132, 456, 537, 546, 579
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	2 cut(s)	797, 842
HphI	GGTGA	4 cut(s)	46, 73, 163, 582
Hpy166II	GTNNAC	5 cut(s)	91, 348, 517, 616, 687
Hpy188I	TCNGA	4 cut(s)	478, 498, 796, 802
Hpy188III	TCNNGA	2 cut(s)	69, 294
Hpy8I	GTNNAC	5 cut(s)	91, 348, 517, 616, 687
Hpy99I	CGWCG	5 cut(s)	254, 478, 518, 521, 527
HpyAV	CCTTC	3 cut(s)	94, 202, 797
HpyCH4III	ACNGT	2 cut(s)	109, 878
HpyCH4IV	ACGT	4 cut(s)	390, 452, 683, 812
HpyCH4V	TGCA	4 cut(s)	243, 306, 603, 925
HpyF10VI	GCNNNNNNNGC	9 cut(s)	186, 216, 320, 329, 338, 369, 543, 545, 830
HpyF3I	CTNAG	2 cut(s)	32, 144
HpySE526I	ACGT	4 cut(s)	390, 452, 683, 812
Hsp92I	GRCGYC	3 cut(s)	390, 525, 557
Hsp92II	CATG	3 cut(s)	10, 603, 693
HspAI	GCGC	5 cut(s)	132, 456, 537, 546, 579
Kzo9I	GATC	2 cut(s)	423, 443
LmnI	GCTCC	8 cut(s)	71, 188, 205, 272, 311, 317, 328, 362
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	2 cut(s)	263, 661
MaeI	CTAG	4 cut(s)	125, 338, 738, 821
MaeII	ACGT	4 cut(s)	390, 452, 683, 812
MaeIII	GTNAC	2 cut(s)	98, 572
MalI	GATC	2 cut(s)	425, 445
MbiI	CCGCTC	2 cut(s)	314, 323
MboI	GATC	2 cut(s)	423, 443
MboII	GAAGA	3 cut(s)	725, 753, 852
MfeI	CAATTG	1 cut(s)	864
MhlI	GDGCHC	3 cut(s)	171, 232, 507
MlsI	TGGCCA	1 cut(s)	115
MluCI	AATT	3 cut(s)	120, 757, 864
MluI	ACGCGT	1 cut(s)	660
MluNI	TGGCCA	1 cut(s)	115
MlyI	GAGTC	1 cut(s)	836
MmeI	TCCRAC	3 cut(s)	227, 456, 774
MnlI	CCTC	5 cut(s)	41, 47, 424, 491, 685
Mox20I	TGGCCA	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	115
MseI	TTAA	1 cut(s)	630
Msp20I	TGGCCA	1 cut(s)	115
MspA1I	CMGCKG	1 cut(s)	240
MspR9I	CCNGG	5 cut(s)	117, 398, 466, 697, 784
MunI	CAATTG	1 cut(s)	864
MvaI	CCWGG	2 cut(s)	117, 398
MvnI	CGCG	3 cut(s)	548, 581, 662
MwoI	GCNNNNNNNGC	9 cut(s)	186, 216, 320, 329, 338, 369, 543, 545, 830
NciI	CCSGG	3 cut(s)	466, 697, 784
NdeII	GATC	2 cut(s)	423, 443
NheI	GCTAGC	1 cut(s)	820
NlaIII	CATG	3 cut(s)	10, 603, 693
NlaIV	GGNNCC	6 cut(s)	184, 230, 268, 319, 358, 781
NmeAIII	GCCGAG	2 cut(s)	333, 367
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	2 cut(s)	603, 693
PaeR7I	CTCGAG	1 cut(s)	676
PaqCI	CACCTGC	2 cut(s)	337, 613
PciI	ACATGT	1 cut(s)	689
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	797
PkrI	GCNGC	6 cut(s)	182, 221, 242, 322, 545, 809
PleI	GAGTC	1 cut(s)	836
PpsI	GAGTC	1 cut(s)	836
Ppu21I	YACGTR	1 cut(s)	453
PscI	ACATGT	1 cut(s)	689
PsiI	TTATAA	1 cut(s)	411
Psp124BI	GAGCTC	2 cut(s)	171, 507
Psp6I	CCWGG	2 cut(s)	115, 396
PspGI	CCWGG	2 cut(s)	115, 396
PspN4I	GGNNCC	6 cut(s)	184, 230, 268, 319, 358, 781
PspOMI	GGGCCC	1 cut(s)	228
PspPI	GGNCC	4 cut(s)	217, 228, 229, 478
PspXI	VCTCGAGB	1 cut(s)	676
RsaI	GTAC	4 cut(s)	451, 617, 682, 694
RsaNI	GTAC	4 cut(s)	450, 616, 681, 693
SacI	GAGCTC	2 cut(s)	171, 507
SalI	GTCGAC	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	6 cut(s)	181, 220, 241, 321, 544, 808
Sau3AI	GATC	2 cut(s)	423, 443
Sau96I	GGNCC	4 cut(s)	217, 228, 229, 478
SchI	GAGTC	1 cut(s)	836
ScrFI	CCNGG	5 cut(s)	117, 398, 466, 697, 784
SduI	GDGCHC	3 cut(s)	171, 232, 507
SfaNI	GCATC	2 cut(s)	263, 661
Sfr274I	CTCGAG	1 cut(s)	676
SgrDI	CGTCGACG	1 cut(s)	515
SinI	GGWCC	1 cut(s)	478
SlaI	CTCGAG	1 cut(s)	676
SmlI	CTYRAG	2 cut(s)	506, 676
SmoI	CTYRAG	2 cut(s)	506, 676
Sse9I	AATT	3 cut(s)	120, 757, 864
SspMI	CTAG	4 cut(s)	125, 338, 738, 821
SstI	GAGCTC	2 cut(s)	171, 507
StyD4I	CCNGG	5 cut(s)	115, 396, 464, 695, 782
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	109, 878
TaiI	ACGT	4 cut(s)	393, 455, 686, 815
TaqI	TCGA	3 cut(s)	249, 516, 677
TasI	AATT	3 cut(s)	120, 757, 864
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	5 cut(s)	183, 222, 323, 546, 810
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	883
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	240
Tsp45I	GTSAC	1 cut(s)	98
TspGWI	ACGGA	2 cut(s)	324, 601
TspRI	CASTG	1 cut(s)	883
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	2 cut(s)	120, 757
XceI	RCATGY	2 cut(s)	603, 693
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XhoI	CTCGAG	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	4 cut(s)	125, 338, 738, 821
ZraI	GACGTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.