Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003319

Physical Location & Seq

Genomic Coordinates Reverse (-)

15430958 .. 15431868

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGATTCCCCCAAATTTGACCAAAATCCTCATGGCAGCTCCATTTTCTCACCACCTCACCTTCCTTCTTCTAATCATTACCAGAGGGGTCTCAGCAGCCACATTCACGTTCACAAATAAGTGTGACTTCACAGTATGGCCGGGAATTCTAGCCAGCTCCGGTAGCGAAAAGCTCGACAGCACCGGCTTCGAGCTCCCCAAAGGCAGCTCCCGCGTTTTCCAGGCCCCTACTGGCTGGTCCGGTCGGTTCTGGGGCCGAACTGGCTGCAGCTTCGACGGTTCGGGCCGCGGTTCGTGTTCAACCGGGGACTGCGGCTCAGGCGAGCTCGAGTGCAACGGAGCTGGAGCAGCCCCGCCAGCCACTCTAGCCGAGTTCACACTCGGTTCGGGTTCTCAAGACTTCTATGATGTCAGCCTTGTTGACGGTTATAACTTACCTATGATCGTCGAGGGGAGTGCGGGATCGGGTGCGTGCGCGTCCACCGGGTGCGTTACGGACCTCAACCGTAGGTGCCCTGCTGAGCTCAAAGTCGAAGGTGGCGGCGCGTGCAAGAGCGCGTGTGACGCGTTTGGAAGTCCGGAGTATTGTTGCAACGGCGCGTATGGTTCACCGTCTACATGCAAGCCGTCCATGTACTCACAGTTGTTTAAGTCCGCGTGTCCCAAGTCGTACAGCTATGCTTACGATGACGCCTCAAGTACATTTACGTGTACGAATGCTGATTATACGATCACATTTTGCGCTTCTCTCACTTCGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

254

Amino Acids

26.33

Weight (kDa)

5.17

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38660 AT4G38660
fragaria_vesca	FvH4_1g11710 FvH4_2g01540
malus_domestica	MD02G1130200.v1.1 MD05G1118900.v1.1 MD10G1121900.v1.1 MD15G1244200.v1.1
prunus_persica	Prupe.7G169500_v2.0.a1 Prupe.8G163300_v2.0.a1
pyrus_communis	pycom02g10200 pycom02g10220 pycom05g11300 pycom10g10510 pycom15g21500
rosa_chinensis	RchiOBHm_Chr2g0099291 RchiOBHm_Chr6g0244181
rosa_laevigata	RLG00000015376 RLG00000016869
rosa_multiflora	Rmu_co8436735.1_g000001 Rmu_sc0000638.1_g000016 Rmu_sc0001455.1_g000006 Rmu_sc0002025.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143240 Rroxscaffold_7G00215960
rosa_rugosa	Rorug02G0078500 Rorug05G0507800
rosa_samantha	Rh2AG127800 Rh2BG130800 Rh2CG132000 Rh2DG132500 Rh6BG018100 Rh6CG014900 Rh6DG016000
rosa_wichuraiana	Rw2G009870 Rw6G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	614
AccII	CGCG	8 cut(s)	213, 288, 476, 545, 557, 566, 599, 656
AccIII	TCCGGA	1 cut(s)	577
AciI	CCGC	8 cut(s)	211, 286, 288, 312, 353, 458, 540, 654
AclWI	GGATC	1 cut(s)	469
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	13, 144
AcyI	GRCGYC	1 cut(s)	690
AdeI	CACNNNGTG	1 cut(s)	486
AfaI	GTAC	4 cut(s)	635, 671, 700, 712
AflIII	ACRYGT	2 cut(s)	564, 707
AgsI	TTSAA	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	219
Alw21I	GWGCWC	3 cut(s)	195, 327, 525
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	326
Aor13HI	TCCGGA	1 cut(s)	577
AoxI	GGCC	4 cut(s)	137, 222, 253, 283
ApeKI	GCWGC	6 cut(s)	35, 95, 204, 264, 267, 347
ApoI	RAATTY	2 cut(s)	13, 144
AspLEI	GCGC	5 cut(s)	476, 545, 557, 599, 743
AspS9I	GGNCC	5 cut(s)	223, 237, 253, 283, 496
AsuC2I	CCSGG	3 cut(s)	141, 304, 484
AsuHPI	GGTGA	3 cut(s)	41, 49, 600
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	237, 496
BaeGI	GKGCMC	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	510
BanII	GRGCYC	3 cut(s)	195, 327, 525
Bbv12I	GWGCWC	3 cut(s)	195, 327, 525
BbvI	GCAGC	6 cut(s)	47, 107, 216, 251, 279, 359
BceAI	ACGGC	2 cut(s)	610, 610
BcgI	CGANNNNNNTGC	6 cut(s)	169, 203, 246, 280, 437, 471
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	3 cut(s)	141, 304, 484
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	149, 365
BfmI	CTRYAG	1 cut(s)	265
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	9 cut(s)	36, 96, 205, 265, 268, 286, 313, 348, 541
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	9 cut(s)	37, 97, 206, 266, 269, 287, 314, 349, 542
Bme1390I	CCNGG	4 cut(s)	141, 221, 304, 484
Bme18I	GGWCC	2 cut(s)	237, 496
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	5 cut(s)	223, 237, 253, 283, 496
BmiI	GGNNCC	3 cut(s)	225, 254, 512
BmrFI	CCNGG	4 cut(s)	141, 221, 304, 484
BpmI	CTGGAG	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	2 cut(s)	378, 679
BpuMI	CCSGG	3 cut(s)	141, 304, 484
BsaAI	YACGTR	1 cut(s)	708
BsaHI	GRCGYC	1 cut(s)	690
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	286, 303
BsaWI	WCCGGW	3 cut(s)	158, 239, 577
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	235, 265
BseAI	TCCGGA	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	286, 303
BseMII	CTCAG	3 cut(s)	105, 330, 510
BseNI	ACTGG	2 cut(s)	235, 265
BseSI	GKGCMC	1 cut(s)	515
BseXI	GCAGC	6 cut(s)	47, 107, 216, 251, 279, 359
Bsh1236I	CGCG	8 cut(s)	213, 288, 476, 545, 557, 566, 599, 656
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	4 cut(s)	139, 224, 255, 285
BshNI	GGYRCC	1 cut(s)	510
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	3 cut(s)	195, 327, 525
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	7 cut(s)	140, 159, 183, 240, 303, 483, 578
BslFI	GGGAC	2 cut(s)	320, 645
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	2 cut(s)	320, 645
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	4 cut(s)	139, 224, 255, 285
Bso31I	GGTCTC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	4 cut(s)	195, 327, 515, 525
Bsp13I	TCCGGA	1 cut(s)	577
Bsp143I	GATC	3 cut(s)	441, 461, 729
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	8 cut(s)	211, 286, 288, 312, 353, 458, 540, 654
BspANI	GGCC	4 cut(s)	139, 224, 255, 285
BspCNI	CTCAG	3 cut(s)	104, 329, 511
BspEI	TCCGGA	1 cut(s)	577
BspFNI	CGCG	8 cut(s)	213, 288, 476, 545, 557, 566, 599, 656
BspLI	GGNNCC	3 cut(s)	225, 254, 512
BspMAI	CTGCAG	1 cut(s)	269
BspPI	GGATC	1 cut(s)	469
BspT107I	GGYRCC	1 cut(s)	510
BspTNI	GGTCTC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	235, 265
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	286, 303
BssMI	GATC	3 cut(s)	441, 461, 729
BssNI	GRCGYC	1 cut(s)	690
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	6 cut(s)	133, 278, 425, 506, 612, 642
BstACI	GRCGYC	1 cut(s)	690
BstBAI	YACGTR	1 cut(s)	708
BstC8I	GCNNGC	6 cut(s)	154, 323, 357, 472, 547, 623
BstDEI	CTNAG	3 cut(s)	91, 316, 519
BstDSI	CCRYGG	1 cut(s)	286
BstFNI	CGCG	8 cut(s)	213, 288, 476, 545, 557, 566, 599, 656
BstHHI	GCGC	5 cut(s)	476, 545, 557, 599, 743
BstKTI	GATC	3 cut(s)	444, 464, 732
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	3 cut(s)	441, 461, 729
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	9 cut(s)	162, 210, 261, 318, 347, 356, 365, 546, 563
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	4 cut(s)	139, 219, 302, 482
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	515
BstUI	CGCG	8 cut(s)	213, 288, 476, 545, 557, 566, 599, 656
BstV1I	GCAGC	6 cut(s)	47, 107, 216, 251, 279, 359
BsuRI	GGCC	4 cut(s)	139, 224, 255, 285
BtgI	CCRYGG	1 cut(s)	286
Cac8I	GCNNGC	6 cut(s)	154, 323, 357, 472, 547, 623
CfoI	GCGC	5 cut(s)	476, 545, 557, 599, 743
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	5 cut(s)	223, 237, 253, 283, 496
Cfr42I	CCGCGG	1 cut(s)	289
CseI	GACGC	3 cut(s)	465, 572, 698
Csp6I	GTAC	4 cut(s)	634, 670, 699, 711
CviAII	CATG	3 cut(s)	31, 618, 631
CviQI	GTAC	4 cut(s)	634, 670, 699, 711
DdeI	CTNAG	3 cut(s)	91, 316, 519
DpnI	GATC	3 cut(s)	443, 463, 731
DpnII	GATC	3 cut(s)	441, 461, 729
DraIII	CACNNNGTG	1 cut(s)	486
EaeI	YGGCCR	1 cut(s)	137
Ecl136II	GAGCTC	3 cut(s)	193, 325, 523
Eco24I	GRGCYC	3 cut(s)	195, 327, 525
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	237, 496
Eco53kI	GAGCTC	3 cut(s)	193, 325, 523
Eco88I	CYCGRG	1 cut(s)	326
EcoICRI	GAGCTC	3 cut(s)	193, 325, 523
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	219
EcoT38I	GRGCYC	3 cut(s)	195, 327, 525
FaeI	CATG	3 cut(s)	34, 621, 634
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	2 cut(s)	320, 645
FatI	CATG	3 cut(s)	30, 617, 630
FauI	CCCGC	3 cut(s)	218, 360, 451
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	9 cut(s)	36, 96, 205, 265, 268, 286, 313, 348, 541
FriOI	GRGCYC	3 cut(s)	195, 327, 525
Fsp4HI	GCNGC	9 cut(s)	36, 96, 205, 265, 268, 286, 313, 348, 541
FspBI	CTAG	2 cut(s)	149, 365
GlaI	GCGC	5 cut(s)	475, 544, 556, 598, 742
GluI	GCNGC	9 cut(s)	36, 96, 205, 265, 268, 286, 313, 348, 541
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	4 cut(s)	139, 224, 255, 285
HapII	CCGG	7 cut(s)	140, 159, 183, 240, 303, 483, 578
HgaI	GACGC	3 cut(s)	465, 572, 698
HhaI	GCGC	5 cut(s)	476, 545, 557, 599, 743
Hin1I	GRCGYC	1 cut(s)	690
Hin1II	CATG	3 cut(s)	34, 621, 634
Hin6I	GCGC	5 cut(s)	474, 543, 555, 597, 741
HinP1I	GCGC	5 cut(s)	474, 543, 555, 597, 741
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	7 cut(s)	140, 159, 183, 240, 303, 483, 578
HphI	GGTGA	3 cut(s)	41, 49, 600
Hpy166II	GTNNAC	7 cut(s)	111, 375, 421, 480, 608, 615, 711
Hpy188III	TCNNGA	2 cut(s)	395, 578
Hpy8I	GTNNAC	7 cut(s)	111, 375, 421, 480, 608, 615, 711
Hpy99I	CGWCG	2 cut(s)	278, 449
HpyAV	CCTTC	3 cut(s)	70, 74, 527
HpyCH4III	ACNGT	6 cut(s)	133, 278, 425, 506, 612, 642
HpyCH4IV	ACGT	2 cut(s)	107, 707
HpyCH4V	TGCA	5 cut(s)	267, 333, 549, 591, 621
HpyF10VI	GCNNNNNNNGC	9 cut(s)	162, 210, 261, 318, 347, 356, 365, 546, 563
HpyF3I	CTNAG	3 cut(s)	91, 316, 519
HpySE526I	ACGT	2 cut(s)	107, 707
Hsp92I	GRCGYC	1 cut(s)	690
Hsp92II	CATG	3 cut(s)	34, 621, 634
HspAI	GCGC	5 cut(s)	474, 543, 555, 597, 741
Kpn2I	TCCGGA	1 cut(s)	577
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	441, 461, 729
LmnI	GCTCC	6 cut(s)	43, 161, 198, 212, 338, 344
Lsp1109I	GCAGC	6 cut(s)	47, 107, 216, 251, 279, 359
MaeI	CTAG	2 cut(s)	149, 365
MaeII	ACGT	2 cut(s)	107, 707
MaeIII	GTNAC	3 cut(s)	122, 490, 560
MalI	GATC	3 cut(s)	443, 463, 731
MboI	GATC	3 cut(s)	441, 461, 729
MboII	GAAGA	1 cut(s)	59
MhlI	GDGCHC	4 cut(s)	195, 327, 515, 525
MluCI	AATT	2 cut(s)	13, 144
MluI	ACGCGT	1 cut(s)	564
MnlI	CCTC	7 cut(s)	38, 65, 77, 442, 509, 703, 750
MroI	TCCGGA	1 cut(s)	577
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	1 cut(s)	706
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	7 cut(s)	140, 159, 183, 240, 303, 483, 578
MspR9I	CCNGG	4 cut(s)	141, 221, 304, 484
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	8 cut(s)	213, 288, 476, 545, 557, 566, 599, 656
MwoI	GCNNNNNNNGC	9 cut(s)	162, 210, 261, 318, 347, 356, 365, 546, 563
NciI	CCSGG	3 cut(s)	141, 304, 484
NdeII	GATC	3 cut(s)	441, 461, 729
NlaIII	CATG	3 cut(s)	34, 621, 634
NlaIV	GGNNCC	3 cut(s)	225, 254, 512
NmeAIII	GCCGAG	1 cut(s)	394
NmuCI	GTSAC	2 cut(s)	122, 560
NspI	RCATGY	1 cut(s)	621
PaeR7I	CTCGAG	1 cut(s)	326
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	9 cut(s)	37, 97, 206, 266, 269, 287, 314, 349, 542
Ppu21I	YACGTR	1 cut(s)	708
PsiI	TTATAA	1 cut(s)	429
Psp124BI	GAGCTC	3 cut(s)	195, 327, 525
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	225, 254, 512
PspPI	GGNCC	5 cut(s)	223, 237, 253, 283, 496
PspXI	VCTCGAGB	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	269
RsaI	GTAC	4 cut(s)	635, 671, 700, 712
RsaNI	GTAC	4 cut(s)	634, 670, 699, 711
RseI	CAYNNNNRTG	1 cut(s)	706
SacI	GAGCTC	3 cut(s)	195, 327, 525
SacII	CCGCGG	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	9 cut(s)	36, 96, 205, 265, 268, 286, 313, 348, 541
Sau3AI	GATC	3 cut(s)	441, 461, 729
Sau96I	GGNCC	5 cut(s)	223, 237, 253, 283, 496
ScrFI	CCNGG	4 cut(s)	141, 221, 304, 484
SduI	GDGCHC	4 cut(s)	195, 327, 515, 525
SfcI	CTRYAG	1 cut(s)	265
Sfr274I	CTCGAG	1 cut(s)	326
Sfr303I	CCGCGG	1 cut(s)	289
SgrBI	CCGCGG	1 cut(s)	289
SinI	GGWCC	2 cut(s)	237, 496
SlaI	CTCGAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	706
SmlI	CTYRAG	3 cut(s)	326, 393, 694
SmoI	CTYRAG	3 cut(s)	326, 393, 694
Sse9I	AATT	2 cut(s)	13, 144
SsiI	CCGC	8 cut(s)	211, 286, 288, 312, 353, 458, 540, 654
SspMI	CTAG	2 cut(s)	149, 365
SstI	GAGCTC	3 cut(s)	195, 327, 525
StyD4I	CCNGG	4 cut(s)	139, 219, 302, 482
TaaI	ACNGT	6 cut(s)	133, 278, 425, 506, 612, 642
TaiI	ACGT	2 cut(s)	110, 710
TaqI	TCGA	7 cut(s)	174, 189, 273, 327, 447, 531, 755
TasI	AATT	2 cut(s)	13, 144
TatI	WGTACW	2 cut(s)	633, 698
TauI	GCSGC	3 cut(s)	288, 315, 543
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TseFI	GTSAC	2 cut(s)	122, 560
TseI	GCWGC	6 cut(s)	35, 95, 204, 264, 267, 347
Tsp45I	GTSAC	2 cut(s)	122, 560
TspGWI	ACGGA	2 cut(s)	351, 509
VpaK11BI	GGWCC	2 cut(s)	237, 496
XapI	RAATTY	2 cut(s)	13, 144
XceI	RCATGY	1 cut(s)	621
XcmI	CCANNNNNNNNNTGG	2 cut(s)	28, 227
XhoI	CTCGAG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	614
XspI	CTAG	2 cut(s)	149, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.