Rh6BG018100

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003319
Physical Location & Seq
Reverse (-)
2637556 .. 2640191
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG018100.1

Sequence Viewer

Length: 993 bp
ATGGACAACTTAATTCTCAGCCTCCTTCTCATACTGGTCACCTCCAAAGGCGTTTCCGGTGCTACATTCACCTTCGTCAACAGATGTGACTACACAGTTTGGCCCGGGATTCTCGCAAATGCAAACAGTCCTAGGCTCGACAGCACAGGATTCGAGCTCCCAAGACAAACTGCCCGAACATTCCAAGCCCCGACCGGCTGGTCCGGCCGTTTCTGGGGCCGAACCGGCTGCACTTTCGACGGATCCGGTTCCGGGTCATGCCAAACCGGCGACTGCGGCTCCGGCACCGTGGAATGCAACGGCGCCGGAGCCGCCCCGCCGGCCACTCTAGCCGAGTTCACTCTCGGCACCGGCGGCCAGGACTTCTATGACGTCAGCCTCGTCGACGGGTACAACTTGCCCGTTTTCGTGGAAGGGACTGGCGGGTCGGGTCAGTGTGCTTCCACCGGATGCTCCACGGATCTGAACCTGCAGTGCCCGACTGAGCTGAGGAGCGAGGATGGGAGCGCGTGCAAGAGCGCGTGTGAGGCGTTTGGGAGCCCCGAGTACTGCTGTAGCGGCGCGTATGGCTCACCCTCGACTTGTCGGCCGTCGGTTTACTCCGAGATGTTTAAGGCTGCTTGTCCCAAGTCGTACAGCTACGCGTACGACGACGCTACGAGTACGTTTACGTGCACCGGAGCTGATTATACGGTTACGTTTTGCCCTTCATCTCCAAGTCAGAAATCTTCTAGAGATTCAACACCAATGACAGGAGGAGCAACTTCACAAGACGGGGTTGCTGGGGCAGTCCCGGGGTTCACTTATTCGGGTTCGACTGCAGGGTCGGTTCCGGTTACTGGGTCAGGAGGTTCTGGATCTGGTGAGGCAATGCTGACAGATGGGTCATGGTTAGCTGGTTTAGCCATGGGAGACTCACCAAGGGCATTGTGTCCCTCAACCCTAATGACTTTATCAACTTTATTTATTATCTTGTCCTATCTTTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

330

Amino Acids

33.76

Weight (kDa)

4.31

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 27 - 236 1.4e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 199, 424, 823, 883
AatII GACGTC 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 477
AccB1I GGYRCC 3 cut(s) 284, 302, 347
AccI GTMKAC 1 cut(s) 384
AccII CGCG 4 cut(s) 509, 521, 563, 644
AciI CCGC 6 cut(s) 276, 312, 317, 354, 423, 558
AclWI GGATC 4 cut(s) 237, 250, 468, 865
AcoI YGGCCR 4 cut(s) 205, 321, 355, 587
AcyI GRCGYC 2 cut(s) 303, 372
AfaI GTAC 5 cut(s) 392, 548, 635, 647, 664
AfiI CCNNNNNNNGG 4 cut(s) 214, 252, 752, 839
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 1 cut(s) 741
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 5 cut(s) 157, 487, 639, 683, 896
AluI AGCT 5 cut(s) 157, 487, 639, 683, 896
Alw21I GWGCWC 2 cut(s) 159, 677
Alw26I GTCTC 1 cut(s) 906
Alw44I GTGCAC 1 cut(s) 673
AlwI GGATC 4 cut(s) 237, 250, 468, 865
Ama87I CYCGRG 3 cut(s) 104, 542, 793
AoxI GGCC 6 cut(s) 101, 205, 217, 321, 355, 587
ApaLI GTGCAC 1 cut(s) 673
ApeKI GCWGC 2 cut(s) 228, 617
AspA2I CCTAGG 1 cut(s) 131
AspLEI GCGC 4 cut(s) 305, 509, 521, 563
AspS9I GGNCC 3 cut(s) 102, 201, 217
AsuC2I CCSGG 5 cut(s) 105, 106, 253, 794, 795
AsuHPI GGTGA 5 cut(s) 31, 61, 564, 875, 909
AvaI CYCGRG 3 cut(s) 104, 542, 793
AvaII GGWCC 1 cut(s) 201
AvrII CCTAGG 1 cut(s) 131
BaeGI GKGCMC 2 cut(s) 479, 677
BamHI GGATCC 1 cut(s) 242
BanI GGYRCC 3 cut(s) 284, 302, 347
BanII GRGCYC 2 cut(s) 159, 542
Bbv12I GWGCWC 2 cut(s) 159, 677
BbvCI CCTCAGC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 215, 604
BccI CCATC 2 cut(s) 494, 875
BceAI ACGGC 3 cut(s) 192, 316, 574
BcgI CGANNNNNNTGC 4 cut(s) 133, 167, 210, 244
BciT130I CCWGG 1 cut(s) 359
BcnI CCSGG 5 cut(s) 105, 106, 253, 794, 795
BcoDI GTCTC 1 cut(s) 906
BfaI CTAG 3 cut(s) 132, 329, 732
BfmI CTRYAG 3 cut(s) 470, 553, 819
BfoI RGCGCY 1 cut(s) 306
BfuAI ACCTGC 1 cut(s) 477
BglI GCCNNNNNGGC 3 cut(s) 225, 267, 320
BisI GCNGC 6 cut(s) 229, 277, 312, 355, 559, 618
BlnI CCTAGG 1 cut(s) 131
BlsI GCNGC 6 cut(s) 230, 278, 313, 356, 560, 619
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 6 cut(s) 105, 106, 253, 359, 794, 795
Bme18I GGWCC 1 cut(s) 201
BmeT110I CYCGRG 3 cut(s) 104, 542, 793
BmgT120I GGNCC 3 cut(s) 102, 201, 217
BmrFI CCNGG 6 cut(s) 105, 106, 253, 359, 794, 795
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 1 cut(s) 440
BmuI ACTGGG 1 cut(s) 849
Bpu10I CCTNAGC 1 cut(s) 488
BpuMI CCSGG 5 cut(s) 105, 106, 253, 794, 795
BsaAI YACGTR 1 cut(s) 672
BsaHI GRCGYC 2 cut(s) 303, 372
BsaJI CCNNGG 8 cut(s) 104, 131, 288, 456, 793, 794, 906, 920
BsaWI WCCGGW 5 cut(s) 56, 245, 446, 677, 832
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 252, 752, 839
Bse118I RCCGGY 5 cut(s) 194, 224, 266, 319, 350
Bse1I ACTGG 3 cut(s) 39, 424, 844
Bse3DI GCAATG 1 cut(s) 876
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 8 cut(s) 104, 131, 288, 456, 793, 794, 906, 920
BseGI GGATG 2 cut(s) 455, 505
BseLI CCNNNNNNNGG 4 cut(s) 214, 252, 752, 839
BseMI GCAATG 1 cut(s) 876
BseMII CTCAG 3 cut(s) 31, 474, 479
BseNI ACTGG 3 cut(s) 39, 424, 844
BseRI GAGGAG 2 cut(s) 505, 771
BseSI GKGCMC 2 cut(s) 479, 677
BseX3I CGGCCG 2 cut(s) 205, 587
BseXI GCAGC 2 cut(s) 215, 604
BseYI CCCAGC 1 cut(s) 782
BsgI GTGCAG 1 cut(s) 214
Bsh1236I CGCG 4 cut(s) 509, 521, 563, 644
Bsh1285I CGRYCG 3 cut(s) 195, 208, 590
BshFI GGCC 6 cut(s) 103, 207, 219, 323, 357, 589
BshNI GGYRCC 3 cut(s) 284, 302, 347
BsiEI CGRYCG 3 cut(s) 195, 208, 590
BsiHKAI GWGCWC 2 cut(s) 159, 677
BsiHKCI CYCGRG 3 cut(s) 104, 542, 793
BsiWI CGTACG 1 cut(s) 645
BslFI GGGAC 4 cut(s) 430, 609, 776, 918
BslI CCNNNNNNNGG 4 cut(s) 214, 252, 752, 839
BsmAI GTCTC 1 cut(s) 906
BsmFI GGGAC 4 cut(s) 430, 609, 776, 918
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 6 cut(s) 103, 207, 219, 323, 357, 589
BsoBI CYCGRG 3 cut(s) 104, 542, 793
Bsp1286I GDGCHC 4 cut(s) 159, 479, 542, 677
Bsp143I GATC 3 cut(s) 242, 460, 857
Bsp19I CCATGG 1 cut(s) 906
BspACI CCGC 6 cut(s) 276, 312, 317, 354, 423, 558
BspANI GGCC 6 cut(s) 103, 207, 219, 323, 357, 589
BspCNI CTCAG 3 cut(s) 30, 475, 480
BspFNI CGCG 4 cut(s) 509, 521, 563, 644
BspMAI CTGCAG 2 cut(s) 474, 823
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 4 cut(s) 237, 250, 468, 865
BspT107I GGYRCC 3 cut(s) 284, 302, 347
BsrDI GCAATG 1 cut(s) 876
BsrFI RCCGGY 5 cut(s) 194, 224, 266, 319, 350
BsrI ACTGG 3 cut(s) 39, 424, 844
BssAI RCCGGY 5 cut(s) 194, 224, 266, 319, 350
BssECI CCNNGG 8 cut(s) 104, 131, 288, 456, 793, 794, 906, 920
BssMI GATC 3 cut(s) 242, 460, 857
BssNI GRCGYC 2 cut(s) 303, 372
BssT1I CCWWGG 3 cut(s) 131, 906, 920
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 4 cut(s) 97, 128, 289, 694
BstACI GRCGYC 2 cut(s) 303, 372
BstBAI YACGTR 1 cut(s) 672
BstC8I GCNNGC 2 cut(s) 321, 511
BstDEI CTNAG 3 cut(s) 17, 483, 488
BstDSI CCRYGG 3 cut(s) 288, 456, 906
BstEII GGTNACC 1 cut(s) 37
BstF5I GGATG 2 cut(s) 455, 505
BstFNI CGCG 4 cut(s) 509, 521, 563, 644
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 4 cut(s) 305, 509, 521, 563
BstKTI GATC 3 cut(s) 245, 463, 860
BstMAI GTCTC 1 cut(s) 906
BstMBI GATC 3 cut(s) 242, 460, 857
BstMCI CGRYCG 3 cut(s) 195, 208, 590
BstNI CCWGG 1 cut(s) 359
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 6 cut(s) 103, 104, 251, 357, 792, 793
BstSFI CTRYAG 3 cut(s) 470, 553, 819
BstSLI GKGCMC 2 cut(s) 479, 677
BstUI CGCG 4 cut(s) 509, 521, 563, 644
BstV1I GCAGC 2 cut(s) 215, 604
BstX2I RGATCY 3 cut(s) 242, 460, 857
BstYI RGATCY 3 cut(s) 242, 460, 857
BstZI CGGCCG 2 cut(s) 205, 587
BsuRI GGCC 6 cut(s) 103, 207, 219, 323, 357, 589
BtgI CCRYGG 3 cut(s) 288, 456, 906
BtsCI GGATG 2 cut(s) 455, 505
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 2 cut(s) 440, 479
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 2 cut(s) 321, 511
CfoI GCGC 4 cut(s) 305, 509, 521, 563
Cfr10I RCCGGY 5 cut(s) 194, 224, 266, 319, 350
Cfr13I GGNCC 3 cut(s) 102, 201, 217
Cfr9I CCCGGG 2 cut(s) 104, 793
CseI GACGC 1 cut(s) 662
Csp6I GTAC 5 cut(s) 391, 547, 634, 646, 663
CviAII CATG 3 cut(s) 258, 888, 907
CviQI GTAC 5 cut(s) 391, 547, 634, 646, 663
DdeI CTNAG 3 cut(s) 17, 483, 488
DinI GGCGCC 1 cut(s) 304
DpnI GATC 3 cut(s) 244, 462, 859
DpnII GATC 3 cut(s) 242, 460, 857
DrdI GACNNNNNNGTC 4 cut(s) 199, 424, 823, 883
DseDI GACNNNNNNGTC 4 cut(s) 199, 424, 823, 883
EaeI YGGCCR 4 cut(s) 205, 321, 355, 587
EagI CGGCCG 2 cut(s) 205, 587
Ecl136II GAGCTC 1 cut(s) 157
EclXI CGGCCG 2 cut(s) 205, 587
Eco130I CCWWGG 3 cut(s) 131, 906, 920
Eco24I GRGCYC 2 cut(s) 159, 542
Eco47I GGWCC 1 cut(s) 201
Eco52I CGGCCG 2 cut(s) 205, 587
Eco53kI GAGCTC 1 cut(s) 157
Eco88I CYCGRG 3 cut(s) 104, 542, 793
Eco91I GGTNACC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 3 cut(s) 131, 906, 920
EcoT38I GRGCYC 2 cut(s) 159, 542
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
ErhI CCWWGG 3 cut(s) 131, 906, 920
FaeI CATG 3 cut(s) 261, 891, 910
FaiI YATR 7 cut(s) 32, 259, 369, 567, 690, 889, 908
FaqI GGGAC 4 cut(s) 430, 609, 776, 918
FatI CATG 3 cut(s) 257, 887, 906
FauI CCCGC 2 cut(s) 324, 416
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 6 cut(s) 229, 277, 312, 355, 559, 618
FokI GGATG 2 cut(s) 462, 512
FriOI GRGCYC 2 cut(s) 159, 542
Fsp4HI GCNGC 6 cut(s) 229, 277, 312, 355, 559, 618
FspBI CTAG 3 cut(s) 132, 329, 732
GlaI GCGC 4 cut(s) 304, 508, 520, 562
GluI GCNGC 6 cut(s) 229, 277, 312, 355, 559, 618
GsaI CCCAGC 1 cut(s) 786
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 6 cut(s) 103, 207, 219, 323, 357, 589
HgaI GACGC 1 cut(s) 662
HhaI GCGC 4 cut(s) 305, 509, 521, 563
Hin1I GRCGYC 2 cut(s) 303, 372
Hin1II CATG 3 cut(s) 261, 891, 910
Hin6I GCGC 4 cut(s) 303, 507, 519, 561
HinP1I GCGC 4 cut(s) 303, 507, 519, 561
HincII GTYRAC 2 cut(s) 79, 385
HindII GTYRAC 2 cut(s) 79, 385
HinfI GANTC 4 cut(s) 109, 150, 737, 914
HphI GGTGA 5 cut(s) 31, 61, 564, 875, 909
Hpy166II GTNNAC 7 cut(s) 79, 339, 385, 598, 669, 675, 801
Hpy188I TCNGA 3 cut(s) 465, 604, 723
Hpy188III TCNNGA 3 cut(s) 732, 846, 855
Hpy8I GTNNAC 7 cut(s) 79, 339, 385, 598, 669, 675, 801
Hpy99I CGWCG 6 cut(s) 242, 386, 389, 595, 653, 656
HpyAV CCTTC 4 cut(s) 35, 82, 407, 717
HpyCH4III ACNGT 4 cut(s) 97, 128, 289, 694
HpyCH4IV ACGT 4 cut(s) 372, 665, 671, 698
HpyCH4V TGCA 7 cut(s) 122, 231, 297, 472, 513, 675, 821
HpyF3I CTNAG 3 cut(s) 17, 483, 488
HpySE526I ACGT 4 cut(s) 372, 665, 671, 698
Hsp92I GRCGYC 2 cut(s) 303, 372
Hsp92II CATG 3 cut(s) 261, 891, 910
HspAI GCGC 4 cut(s) 303, 507, 519, 561
KasI GGCGCC 1 cut(s) 302
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
Kzo9I GATC 3 cut(s) 242, 460, 857
LmnI GCTCC 9 cut(s) 162, 284, 308, 458, 492, 504, 537, 680, 758
Lsp1109I GCAGC 2 cut(s) 215, 604
LweI GCATC 1 cut(s) 440
MaeI CTAG 3 cut(s) 132, 329, 732
MaeII ACGT 4 cut(s) 372, 665, 671, 698
MaeIII GTNAC 4 cut(s) 37, 86, 694, 835
MalI GATC 3 cut(s) 244, 462, 859
MboI GATC 3 cut(s) 242, 460, 857
MboII GAAGA 1 cut(s) 720
MflI RGATCY 3 cut(s) 242, 460, 857
MhlI GDGCHC 4 cut(s) 159, 479, 542, 677
MluCI AATT 1 cut(s) 12
MluI ACGCGT 1 cut(s) 642
Mly113I GGCGCC 1 cut(s) 303
MlyI GAGTC 1 cut(s) 908
MroNI GCCGGC 1 cut(s) 319
MseI TTAA 2 cut(s) 11, 612
MspR9I CCNGG 6 cut(s) 105, 106, 253, 359, 794, 795
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 1 cut(s) 359
MvnI CGCG 4 cut(s) 509, 521, 563, 644
NaeI GCCGGC 1 cut(s) 321
NarI GGCGCC 1 cut(s) 303
NciI CCSGG 5 cut(s) 105, 106, 253, 794, 795
NcoI CCATGG 1 cut(s) 906
NdeII GATC 3 cut(s) 242, 460, 857
NgoMIV GCCGGC 1 cut(s) 319
NlaIII CATG 3 cut(s) 261, 891, 910
NmeAIII GCCGAG 2 cut(s) 324, 358
NmuCI GTSAC 2 cut(s) 37, 86
PcsI WCGNNNNNNNCGW 2 cut(s) 378, 648
PctI GAATGC 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 321
PfeI GAWTC 3 cut(s) 109, 150, 737
Pfl23II CGTACG 1 cut(s) 645
PkrI GCNGC 6 cut(s) 230, 278, 313, 356, 560, 619
PleI GAGTC 1 cut(s) 908
PluTI GGCGCC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 908
Ppu21I YACGTR 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 357
PspEI GGTNACC 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 782
PspGI CCWGG 1 cut(s) 357
PspLI CGTACG 1 cut(s) 645
PspPI GGNCC 3 cut(s) 102, 201, 217
PstI CTGCAG 2 cut(s) 474, 823
PsuI RGATCY 3 cut(s) 242, 460, 857
RsaI GTAC 5 cut(s) 392, 548, 635, 647, 664
RsaNI GTAC 5 cut(s) 391, 547, 634, 646, 663
SacI GAGCTC 1 cut(s) 159
SalI GTCGAC 1 cut(s) 383
SaqAI TTAA 2 cut(s) 11, 612
SatI GCNGC 6 cut(s) 229, 277, 312, 355, 559, 618
Sau3AI GATC 3 cut(s) 242, 460, 857
Sau96I GGNCC 3 cut(s) 102, 201, 217
ScaI AGTACT 1 cut(s) 548
SchI GAGTC 1 cut(s) 908
ScrFI CCNGG 6 cut(s) 105, 106, 253, 359, 794, 795
SduI GDGCHC 4 cut(s) 159, 479, 542, 677
SfaNI GCATC 1 cut(s) 440
SfcI CTRYAG 3 cut(s) 470, 553, 819
SfoI GGCGCC 1 cut(s) 304
SgrAI CRCCGGYG 1 cut(s) 350
SgrDI CGTCGACG 1 cut(s) 383
SinI GGWCC 1 cut(s) 201
SmaI CCCGGG 2 cut(s) 106, 795
Sse9I AATT 1 cut(s) 12
SsiI CCGC 6 cut(s) 276, 312, 317, 354, 423, 558
SspDI GGCGCC 1 cut(s) 302
SspMI CTAG 3 cut(s) 132, 329, 732
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 6 cut(s) 103, 104, 251, 357, 792, 793
StyI CCWWGG 3 cut(s) 131, 906, 920
TaaI ACNGT 4 cut(s) 97, 128, 289, 694
TaiI ACGT 4 cut(s) 375, 668, 674, 701
TaqI TCGA 6 cut(s) 138, 153, 237, 384, 578, 815
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 546
TauI GCSGC 4 cut(s) 279, 314, 357, 561
TfiI GAWTC 3 cut(s) 109, 150, 737
Tru1I TTAA 2 cut(s) 11, 612
Tru9I TTAA 2 cut(s) 11, 612
TscAI CASTG 2 cut(s) 440, 479
TseFI GTSAC 2 cut(s) 37, 86
TseI GCWGC 2 cut(s) 228, 617
Tsp45I GTSAC 2 cut(s) 37, 86
TspDTI ATGAA 1 cut(s) 699
TspGWI ACGGA 2 cut(s) 255, 473
TspMI CCCGGG 2 cut(s) 104, 793
TspRI CASTG 2 cut(s) 440, 479
VneI GTGCAC 1 cut(s) 673
VpaK11BI GGWCC 1 cut(s) 201
XbaI TCTAGA 1 cut(s) 731
XmaI CCCGGG 2 cut(s) 104, 793
XmaJI CCTAGG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 3 cut(s) 132, 329, 732
ZraI GACGTC 1 cut(s) 373
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.