Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8436735.1

Orthogroup ID

OG0003319

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1205

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8436735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 842 bp

ctggccacttcctctgttcctccccattcgccattcctcactgctccatcttcctctattttcccataaacccttctgcattattctaccccaaaaccccattctgcttctacacaagaatggacaacttaattctcagcctccttctcatactggtcacctccaaaggcgtttccggtgctacattcaccttcgtcaacagatgtgactacacagtttggcctgggattcttgcaaatgcaaacagtcctaggctcgacagtacaggattcgagctcccaagacaaactgccagaacattccaagccccgaccggctggtccggccgtttctggggccgaaccggctgcactttcgacggatccgggtccgggtcatgccaaaccggcgactgcggctccggcaccgtggaatgcaacggcgccggagccgccccgccggctactctagccgagttcaccctcggcaccggcgggcaggacttctatgacgtcagcctcgtcgacgggtacaacttgcccgttttcgtggaagggactggcgggtcgggtcagtgcgcttccaccgggtgctccacggatctgaacctgcagtgcccgactgagctgaggagcgaggatgggagcgcgtgcaagagcgcgtgtgaggcgtttgggagccccgagtactgctgtagcggcgcgtatggctcaccctcgacttgtcggccgtcggtttactccgagatgtttaaggctgcttgtcccaagtcgtacagctacgcgtacgacgacgctacgagtacgtttacgtgcaccggagctgattatacggtgacgttttgcccttcatctccaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

279

Amino Acids

29.49

Weight (kDa)

4.76

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38660 AT4G38660
fragaria_vesca	FvH4_1g11710 FvH4_2g01540
malus_domestica	MD02G1130200.v1.1 MD05G1118900.v1.1 MD10G1121900.v1.1 MD15G1244200.v1.1
prunus_persica	Prupe.7G169500_v2.0.a1 Prupe.8G163300_v2.0.a1
pyrus_communis	pycom02g10200 pycom02g10220 pycom05g11300 pycom10g10510 pycom15g21500
rosa_chinensis	RchiOBHm_Chr2g0099291 RchiOBHm_Chr6g0244181
rosa_laevigata	RLG00000015376 RLG00000016869
rosa_multiflora	Rmu_co8436735.1_g000001 Rmu_sc0000638.1_g000016 Rmu_sc0001455.1_g000006 Rmu_sc0002025.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143240 Rroxscaffold_7G00215960
rosa_rugosa	Rorug02G0078500 Rorug05G0507800
rosa_samantha	Rh2AG127800 Rh2BG130800 Rh2CG132000 Rh2DG132500 Rh6BG018100 Rh6CG014900 Rh6DG016000
rosa_wichuraiana	Rw2G009870 Rw6G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	318, 543
AatII	GACGTC	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	596
AccB1I	GGYRCC	3 cut(s)	403, 421, 466
AccI	GTMKAC	1 cut(s)	503
AccII	CGCG	4 cut(s)	628, 640, 682, 763
AciI	CCGC	6 cut(s)	395, 431, 436, 473, 542, 677
AclWI	GGATC	3 cut(s)	356, 369, 587
AcoI	YGGCCR	3 cut(s)	3, 324, 706
AcyI	GRCGYC	2 cut(s)	422, 491
AdeI	CACNNNGTG	1 cut(s)	569
AfaI	GTAC	6 cut(s)	264, 511, 667, 754, 766, 783
AfiI	CCNNNNNNNGG	2 cut(s)	333, 371
AflIII	ACRYGT	1 cut(s)	761
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	4 cut(s)	276, 606, 758, 802
AluI	AGCT	4 cut(s)	276, 606, 758, 802
Alw21I	GWGCWC	3 cut(s)	278, 574, 796
Alw44I	GTGCAC	1 cut(s)	792
AlwI	GGATC	3 cut(s)	356, 369, 587
Ama87I	CYCGRG	1 cut(s)	661
AoxI	GGCC	5 cut(s)	3, 220, 324, 336, 706
ApaLI	GTGCAC	1 cut(s)	792
ApeKI	GCWGC	2 cut(s)	347, 736
AspA2I	CCTAGG	1 cut(s)	250
AspLEI	GCGC	5 cut(s)	424, 559, 628, 640, 682
AspS9I	GGNCC	3 cut(s)	320, 336, 368
AsuC2I	CCSGG	3 cut(s)	366, 372, 567
AsuHPI	GGTGA	5 cut(s)	150, 180, 450, 683, 825
AvaI	CYCGRG	1 cut(s)	661
AvaII	GGWCC	2 cut(s)	320, 368
AvrII	CCTAGG	1 cut(s)	250
BaeGI	GKGCMC	2 cut(s)	598, 796
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	3 cut(s)	403, 421, 466
BanII	GRGCYC	2 cut(s)	278, 661
Bbv12I	GWGCWC	3 cut(s)	278, 574, 796
BbvCI	CCTCAGC	1 cut(s)	607
BbvI	GCAGC	2 cut(s)	334, 723
BccI	CCATC	2 cut(s)	55, 613
BceAI	ACGGC	3 cut(s)	311, 435, 693
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	1 cut(s)	224
BcnI	CCSGG	3 cut(s)	366, 372, 567
BfaI	CTAG	2 cut(s)	251, 448
BfmI	CTRYAG	2 cut(s)	589, 672
BfoI	RGCGCY	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	596
BglI	GCCNNNNNGGC	3 cut(s)	344, 386, 439
BisI	GCNGC	5 cut(s)	348, 396, 431, 678, 737
BlnI	CCTAGG	1 cut(s)	250
BlsI	GCNGC	5 cut(s)	349, 397, 432, 679, 738
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	4 cut(s)	224, 366, 372, 567
Bme18I	GGWCC	2 cut(s)	320, 368
BmeT110I	CYCGRG	1 cut(s)	661
BmgT120I	GGNCC	3 cut(s)	320, 336, 368
BmiI	GGNNCC	9 cut(s)	337, 363, 369, 399, 405, 423, 429, 468, 658
BmrFI	CCNGG	4 cut(s)	224, 366, 372, 567
Bpu10I	CCTNAGC	1 cut(s)	607
BpuMI	CCSGG	3 cut(s)	366, 372, 567
BsaAI	YACGTR	1 cut(s)	791
BsaHI	GRCGYC	2 cut(s)	422, 491
BsaJI	CCNNGG	6 cut(s)	223, 250, 407, 462, 575, 835
BsaWI	WCCGGW	2 cut(s)	175, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 371
Bse118I	RCCGGY	5 cut(s)	313, 343, 385, 438, 469
Bse1I	ACTGG	2 cut(s)	158, 543
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	6 cut(s)	223, 250, 407, 462, 575, 835
BseGI	GGATG	1 cut(s)	624
BseLI	CCNNNNNNNGG	2 cut(s)	333, 371
BseMII	CTCAG	3 cut(s)	150, 593, 598
BseNI	ACTGG	2 cut(s)	158, 543
BseRI	GAGGAG	1 cut(s)	624
BseSI	GKGCMC	2 cut(s)	598, 796
BseX3I	CGGCCG	2 cut(s)	324, 706
BseXI	GCAGC	2 cut(s)	334, 723
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	4 cut(s)	628, 640, 682, 763
Bsh1285I	CGRYCG	3 cut(s)	314, 327, 709
BshFI	GGCC	5 cut(s)	5, 222, 326, 338, 708
BshNI	GGYRCC	3 cut(s)	403, 421, 466
BsiEI	CGRYCG	3 cut(s)	314, 327, 709
BsiHKAI	GWGCWC	3 cut(s)	278, 574, 796
BsiHKCI	CYCGRG	1 cut(s)	661
BsiWI	CGTACG	1 cut(s)	764
BslFI	GGGAC	2 cut(s)	549, 728
BslI	CCNNNNNNNGG	2 cut(s)	333, 371
BsmFI	GGGAC	2 cut(s)	549, 728
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	5 cut(s)	5, 222, 326, 338, 708
BsoBI	CYCGRG	1 cut(s)	661
Bsp1286I	GDGCHC	5 cut(s)	278, 574, 598, 661, 796
Bsp143I	GATC	2 cut(s)	361, 579
BspACI	CCGC	6 cut(s)	395, 431, 436, 473, 542, 677
BspANI	GGCC	5 cut(s)	5, 222, 326, 338, 708
BspCNI	CTCAG	3 cut(s)	149, 594, 599
BspFNI	CGCG	4 cut(s)	628, 640, 682, 763
BspLI	GGNNCC	9 cut(s)	337, 363, 369, 399, 405, 423, 429, 468, 658
BspMAI	CTGCAG	1 cut(s)	593
BspMI	ACCTGC	1 cut(s)	596
BspPI	GGATC	3 cut(s)	356, 369, 587
BspT107I	GGYRCC	3 cut(s)	403, 421, 466
BsrFI	RCCGGY	5 cut(s)	313, 343, 385, 438, 469
BsrI	ACTGG	2 cut(s)	158, 543
BssAI	RCCGGY	5 cut(s)	313, 343, 385, 438, 469
BssECI	CCNNGG	6 cut(s)	223, 250, 407, 462, 575, 835
BssMI	GATC	2 cut(s)	361, 579
BssNI	GRCGYC	2 cut(s)	422, 491
BssT1I	CCWWGG	2 cut(s)	250, 835
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	5 cut(s)	216, 247, 262, 408, 813
BstACI	GRCGYC	2 cut(s)	422, 491
BstBAI	YACGTR	1 cut(s)	791
BstC8I	GCNNGC	3 cut(s)	440, 475, 630
BstDEI	CTNAG	3 cut(s)	136, 602, 607
BstDSI	CCRYGG	2 cut(s)	407, 575
BstEII	GGTNACC	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	624
BstFNI	CGCG	4 cut(s)	628, 640, 682, 763
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	5 cut(s)	424, 559, 628, 640, 682
BstKTI	GATC	2 cut(s)	364, 582
BstMBI	GATC	2 cut(s)	361, 579
BstMCI	CGRYCG	3 cut(s)	314, 327, 709
BstNI	CCWGG	1 cut(s)	224
BstPI	GGTNACC	1 cut(s)	156
BstSCI	CCNGG	4 cut(s)	222, 364, 370, 565
BstSFI	CTRYAG	2 cut(s)	589, 672
BstSLI	GKGCMC	2 cut(s)	598, 796
BstUI	CGCG	4 cut(s)	628, 640, 682, 763
BstV1I	GCAGC	2 cut(s)	334, 723
BstX2I	RGATCY	2 cut(s)	361, 579
BstYI	RGATCY	2 cut(s)	361, 579
BstZI	CGGCCG	2 cut(s)	324, 706
BsuRI	GGCC	5 cut(s)	5, 222, 326, 338, 708
BtgI	CCRYGG	2 cut(s)	407, 575
BtsCI	GGATG	1 cut(s)	624
BtsI	GCAGTG	2 cut(s)	39, 598
BtsIMutI	CAGTG	3 cut(s)	39, 559, 598
BveI	ACCTGC	1 cut(s)	596
Cac8I	GCNNGC	3 cut(s)	440, 475, 630
CfoI	GCGC	5 cut(s)	424, 559, 628, 640, 682
Cfr10I	RCCGGY	5 cut(s)	313, 343, 385, 438, 469
Cfr13I	GGNCC	3 cut(s)	320, 336, 368
CseI	GACGC	1 cut(s)	781
Csp6I	GTAC	6 cut(s)	263, 510, 666, 753, 765, 782
CviAII	CATG	1 cut(s)	377
CviQI	GTAC	6 cut(s)	263, 510, 666, 753, 765, 782
DdeI	CTNAG	3 cut(s)	136, 602, 607
DinI	GGCGCC	1 cut(s)	423
DpnI	GATC	2 cut(s)	363, 581
DpnII	GATC	2 cut(s)	361, 579
DraIII	CACNNNGTG	1 cut(s)	569
DrdI	GACNNNNNNGTC	2 cut(s)	318, 543
DseDI	GACNNNNNNGTC	2 cut(s)	318, 543
EaeI	YGGCCR	3 cut(s)	3, 324, 706
EagI	CGGCCG	2 cut(s)	324, 706
Ecl136II	GAGCTC	1 cut(s)	276
EclXI	CGGCCG	2 cut(s)	324, 706
Eco130I	CCWWGG	2 cut(s)	250, 835
Eco24I	GRGCYC	2 cut(s)	278, 661
Eco47I	GGWCC	2 cut(s)	320, 368
Eco52I	CGGCCG	2 cut(s)	324, 706
Eco53kI	GAGCTC	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	661
Eco91I	GGTNACC	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	276
EcoO65I	GGTNACC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	2 cut(s)	250, 835
EcoT38I	GRGCYC	2 cut(s)	278, 661
EgeI	GGCGCC	1 cut(s)	423
EheI	GGCGCC	1 cut(s)	423
ErhI	CCWWGG	2 cut(s)	250, 835
FaeI	CATG	1 cut(s)	380
FaiI	YATR	6 cut(s)	67, 151, 378, 488, 686, 809
FaqI	GGGAC	2 cut(s)	549, 728
FatI	CATG	1 cut(s)	376
FauI	CCCGC	3 cut(s)	443, 466, 535
FblI	GTMKAC	1 cut(s)	503
Fnu4HI	GCNGC	5 cut(s)	348, 396, 431, 678, 737
FokI	GGATG	1 cut(s)	631
FriOI	GRGCYC	2 cut(s)	278, 661
Fsp4HI	GCNGC	5 cut(s)	348, 396, 431, 678, 737
FspBI	CTAG	2 cut(s)	251, 448
GlaI	GCGC	5 cut(s)	423, 558, 627, 639, 681
GluI	GCNGC	5 cut(s)	348, 396, 431, 678, 737
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	5 cut(s)	5, 222, 326, 338, 708
HgaI	GACGC	1 cut(s)	781
HhaI	GCGC	5 cut(s)	424, 559, 628, 640, 682
Hin1I	GRCGYC	2 cut(s)	422, 491
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	5 cut(s)	422, 557, 626, 638, 680
HinP1I	GCGC	5 cut(s)	422, 557, 626, 638, 680
HincII	GTYRAC	2 cut(s)	198, 504
HindII	GTYRAC	2 cut(s)	198, 504
HinfI	GANTC	2 cut(s)	228, 269
HphI	GGTGA	5 cut(s)	150, 180, 450, 683, 825
Hpy166II	GTNNAC	6 cut(s)	198, 458, 504, 717, 788, 794
Hpy188I	TCNGA	2 cut(s)	584, 723
Hpy8I	GTNNAC	6 cut(s)	198, 458, 504, 717, 788, 794
Hpy99I	CGWCG	6 cut(s)	361, 505, 508, 714, 772, 775
HpyAV	CCTTC	5 cut(s)	83, 154, 201, 526, 836
HpyCH4III	ACNGT	5 cut(s)	216, 247, 262, 408, 813
HpyCH4IV	ACGT	4 cut(s)	491, 784, 790, 817
HpyCH4V	TGCA	8 cut(s)	79, 235, 241, 350, 416, 591, 632, 794
HpyF3I	CTNAG	3 cut(s)	136, 602, 607
HpySE526I	ACGT	4 cut(s)	491, 784, 790, 817
Hsp92I	GRCGYC	2 cut(s)	422, 491
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	5 cut(s)	422, 557, 626, 638, 680
KasI	GGCGCC	1 cut(s)	421
KroI	GCCGGC	1 cut(s)	438
KroNI	GCCGGC	1 cut(s)	440
Kzo9I	GATC	2 cut(s)	361, 579
LmnI	GCTCC	9 cut(s)	49, 281, 403, 427, 577, 611, 623, 656, 799
Lsp1109I	GCAGC	2 cut(s)	334, 723
MaeI	CTAG	2 cut(s)	251, 448
MaeII	ACGT	4 cut(s)	491, 784, 790, 817
MaeIII	GTNAC	3 cut(s)	156, 205, 813
MalI	GATC	2 cut(s)	363, 581
MboI	GATC	2 cut(s)	361, 579
MboII	GAAGA	1 cut(s)	42
MflI	RGATCY	2 cut(s)	361, 579
MhlI	GDGCHC	5 cut(s)	278, 574, 598, 661, 796
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	131
MluI	ACGCGT	1 cut(s)	761
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	422
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	130, 731
MslI	CAYNNNNRTG	1 cut(s)	118
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	4 cut(s)	224, 366, 372, 567
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	4 cut(s)	628, 640, 682, 763
NaeI	GCCGGC	1 cut(s)	440
NarI	GGCGCC	1 cut(s)	422
NciI	CCSGG	3 cut(s)	366, 372, 567
NdeII	GATC	2 cut(s)	361, 579
NgoMIV	GCCGGC	1 cut(s)	438
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	9 cut(s)	337, 363, 369, 399, 405, 423, 429, 468, 658
NmeAIII	GCCGAG	2 cut(s)	443, 477
NmuCI	GTSAC	3 cut(s)	156, 205, 813
PcsI	WCGNNNNNNNCGW	2 cut(s)	497, 767
PctI	GAATGC	1 cut(s)	418
PdiI	GCCGGC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	228, 269
Pfl23II	CGTACG	1 cut(s)	764
PkrI	GCNGC	5 cut(s)	349, 397, 432, 679, 738
PluTI	GGCGCC	1 cut(s)	425
Ppu21I	YACGTR	1 cut(s)	791
Psp124BI	GAGCTC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	222
PspEI	GGTNACC	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	222
PspLI	CGTACG	1 cut(s)	764
PspN4I	GGNNCC	9 cut(s)	337, 363, 369, 399, 405, 423, 429, 468, 658
PspPI	GGNCC	3 cut(s)	320, 336, 368
PstI	CTGCAG	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	361, 579
RsaI	GTAC	6 cut(s)	264, 511, 667, 754, 766, 783
RsaNI	GTAC	6 cut(s)	263, 510, 666, 753, 765, 782
RseI	CAYNNNNRTG	1 cut(s)	118
SacI	GAGCTC	1 cut(s)	278
SalI	GTCGAC	1 cut(s)	502
SaqAI	TTAA	2 cut(s)	130, 731
SatI	GCNGC	5 cut(s)	348, 396, 431, 678, 737
Sau3AI	GATC	2 cut(s)	361, 579
Sau96I	GGNCC	3 cut(s)	320, 336, 368
ScaI	AGTACT	1 cut(s)	667
ScrFI	CCNGG	4 cut(s)	224, 366, 372, 567
SduI	GDGCHC	5 cut(s)	278, 574, 598, 661, 796
SfcI	CTRYAG	2 cut(s)	589, 672
SfoI	GGCGCC	1 cut(s)	423
SgrAI	CRCCGGYG	1 cut(s)	469
SgrDI	CGTCGACG	1 cut(s)	502
SinI	GGWCC	2 cut(s)	320, 368
SmiMI	CAYNNNNRTG	1 cut(s)	118
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	6 cut(s)	395, 431, 436, 473, 542, 677
SspDI	GGCGCC	1 cut(s)	421
SspMI	CTAG	2 cut(s)	251, 448
SstI	GAGCTC	1 cut(s)	278
StyD4I	CCNGG	4 cut(s)	222, 364, 370, 565
StyI	CCWWGG	2 cut(s)	250, 835
TaaI	ACNGT	5 cut(s)	216, 247, 262, 408, 813
TaiI	ACGT	4 cut(s)	494, 787, 793, 820
TaqI	TCGA	5 cut(s)	257, 272, 356, 503, 697
TasI	AATT	1 cut(s)	131
TatI	WGTACW	2 cut(s)	262, 665
TauI	GCSGC	3 cut(s)	398, 433, 680
TfiI	GAWTC	2 cut(s)	228, 269
Tru1I	TTAA	2 cut(s)	130, 731
Tru9I	TTAA	2 cut(s)	130, 731
TscAI	CASTG	3 cut(s)	46, 559, 598
TseFI	GTSAC	3 cut(s)	156, 205, 813
TseI	GCWGC	2 cut(s)	347, 736
Tsp45I	GTSAC	3 cut(s)	156, 205, 813
TspDTI	ATGAA	1 cut(s)	818
TspGWI	ACGGA	2 cut(s)	374, 592
TspRI	CASTG	3 cut(s)	46, 559, 598
VneI	GTGCAC	1 cut(s)	792
VpaK11BI	GGWCC	2 cut(s)	320, 368
XmaJI	CCTAGG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	503
XspI	CTAG	2 cut(s)	251, 448
ZraI	GACGTC	1 cut(s)	492
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.